M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20565

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20565 133 2.77 Mlig455_003453

Neo: -

Age: logFC(26M/2M)=-0.416

 AC008687.4 Mlig455_003453 {REF} {Length: 1701} {Human: ENSG00000268655, AC008687.4, uncharacterized LOC101059948, [RH, Score=115, Expect=6e-29]} {Smed: dd_Smed_v6_2796_0_1, dd_Smed_v6_2796_0_1, [Score=328, Expect=1e-111]} {RNA1509_6592} {RNA1310_21169} {RNA815_4111.1}

Cumulative graph for MligTC455_20565

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.669 2.226 0.99986 1.00000
RegionR2 -0.543 2.226 0.88807 1.00000
RegionR3 -0.19 2.226 0.83115 1.00000
RegionR4 3.783 2.226 0.08938 0.28520
RegionR5 2.741 2.226 0.08320 0.26928
RegionR6 1.98 2.226 0.22186 0.80225
RegionR7 1.617 2.226 0.33303 0.96814
RegionR8 -4.718 2.226 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.099 2.226 1.00000 1.00000
RegenerationR2 0.514 2.226 0.76360 0.97770
RegenerationR3 1.581 2.226 0.38882 0.79543
RegenerationR4 0.095 2.226 0.99525 1.00000
RegenerationR5 0.358 2.226 0.84695 1.00000
RegenerationR6 0.436 2.226 0.83308 0.99278
RegenerationBL 1.737 2.226 0.40097 0.76995
RegenerationTP 1.878 2.226 0.47890 0.88738


Genes with expression patterns similar to MligTC455_20565

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20565 133 2.77 Mlig455_003453

Neo: -

Age: logFC(26M/2M)=-0.416

 AC008687.4 5 - 1.000 1.000 1.000 1.000 1.000 Mlig455_003453 {REF} {Length: 1701} {Human: ENSG00000268655, AC008687.4, uncharacterized LOC101059948, [RH, Score=115, Expect=6e-29]} {Smed: dd_Smed_v6_2796_0_1, dd_Smed_v6_2796_0_1, [Score=328, Expect=1e-111]} {RNA1509_6592} {RNA1310_21169} {RNA815_4111.1}
2. MligTC455_47837 482 10.04 Mlig455_031756

Neo: -

Age: -

 1.851 - 0.950 - - - 0.901 Mlig455_031756 {REF} {Length: 1149} {TRANSSPLICED} {Pfam: Det1 complexing ubiquitin ligase [PF10172.11, score=34.3]} {RNA1509_59609} {RNA1310_29699} {RNA815_39284.1}
3. MligTC455_09186 306 6.38 Mlig455_064896

Neo: -

Age: -

 PHKA1 1.824 - - - - 0.950 0.874 Mlig455_064896 {REF} {Length: 5554} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=420.8]; Phosphorylase b kinase C-terminal domain [PF19292.1, score=91.0]} {Human: ENSG00000067177, PHKA1, phosphorylase kinase regulatory subunit alpha 1, [Score=959, Expect=0.0]} {Mouse: ENSMUSG00000034055, Phka1, phosphorylase kinase alpha 1, [Score=957, Expect=0.0]} {Dmel: FBgn0030087, CG7766, [RH, Score=1028, Expect=0.0]} {Celegans: WBGene00015754, C14B9.8, Probable phosphorylase b kinase regulatory subunit alpha, [RH, Score=826, Expect=0.0]} {Smed: dd_Smed_v6_6919_0_1, dd_Smed_v6_6919_0_1, [RH, Score=1063, Expect=0.0]} {RNA1509_11853} {RNA1310_2228.1, RNA1509_11853} {RNA1509_11853, RNA815_2765}
4. MligTC455_48472 1609 33.52 Mlig455_025716, Mlig455_025768, Mlig455_064423

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.271

 LTV1 1.817 - 0.862 - 0.955 - -

Mlig455_025716 {REF} {Length: 1914} {TRANSSPLICED} {Pfam: Low temperature viability protein [PF04180.16, score=40.0]} {Human: ENSG00000135521, LTV1, LTV1 ribosome biogenesis factor, [RH, Score=48.9, Expect=1e-05]} {Mouse: ENSMUSG00000019814, Ltv1, LTV1 ribosome biogenesis factor, [Score=48.5, Expect=1e-05]} {Smed: dd_Smed_v6_2863_0_1, dd_Smed_v6_2863_0_1, [Score=53.1, Expect=2e-07]} {RNA1509_8077} {RNA1310_15034} {RNA815_5643}

Mlig455_025768 {REF} {Length: 1915} {TRANSSPLICED} {Pfam: Low temperature viability protein [PF04180.16, score=38.2]} {Human: ENSG00000135521, LTV1, LTV1 ribosome biogenesis factor, [RH, Score=48.9, Expect=1e-05]} {Mouse: ENSMUSG00000019814, Ltv1, LTV1 ribosome biogenesis factor, [Score=49.3, Expect=7e-06]} {Smed: dd_Smed_v6_2863_0_1, dd_Smed_v6_2863_0_1, [Score=51.2, Expect=7e-07]} {RNA1509_8077} {RNA1310_15034} {RNA815_5643}

Mlig455_064423 {REF} {Length: 1915} {TRANSSPLICED} {Pfam: Low temperature viability protein [PF04180.16, score=37.1]} {Mouse: ENSMUSG00000019814, Ltv1, LTV1 ribosome biogenesis factor, [Score=49.7, Expect=6e-06]} {Smed: dd_Smed_v6_2863_0_1, dd_Smed_v6_2863_0_1, [Score=51.2, Expect=7e-07]} {RNA1509_47697, RNA1509_8077} {RNA1310_15034, RNA1509_47697, RNA1509_8077} {RNA1509_47697, RNA1509_8077, RNA815_5643}
5. MligTC455_09187 306 6.37 Mlig455_064900

Neo: -

Age: -

 PHKA1 1.812 - - - - 0.961 0.851 Mlig455_064900 {REF} {Length: 3491} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=420.8]; Phosphorylase b kinase C-terminal domain [PF19292.1, score=91.0]} {Human: ENSG00000067177, PHKA1, phosphorylase kinase regulatory subunit alpha 1, [Score=959, Expect=0.0]} {Mouse: ENSMUSG00000034055, Phka1, phosphorylase kinase alpha 1, [Score=957, Expect=0.0]} {Dmel: FBgn0030087, CG7766, [RH, Score=1028, Expect=0.0]} {Celegans: WBGene00015754, C14B9.8, Probable phosphorylase b kinase regulatory subunit alpha, [RH, Score=826, Expect=0.0]} {Smed: dd_Smed_v6_6919_0_1, dd_Smed_v6_6919_0_1, [RH, Score=1063, Expect=0.0]} {RNA1509_11853} {RNA1310_2228.1} {RNA815_21529}
6. MligTC455_54062 861 17.93 Mlig455_040984

Neo: -

Age: Down-Down-Up

 MRPL38 1.77 - 0.957 - 0.813 - - Mlig455_040984 {REF} {Length: 1628} {Pfam: Phosphatidylethanolamine-binding protein [PF01161.22, score=42.4]} {Human: ENSG00000204316, MRPL38, mitochondrial ribosomal protein L38, [RH, Score=177, Expect=3e-51]} {Mouse: ENSMUSG00000020775, Mrpl38, mitochondrial ribosomal protein L38, [RH, Score=178, Expect=9e-52]} {Dmel: FBgn0030552, mRpL38, mitochondrial ribosomal protein L38, [RH, Score=211, Expect=6e-64]} {Celegans: WBGene00021327, mrpl-38, Mitochondrial Ribosomal Protein, Large, [RH, Score=144, Expect=8e-39]} {Smed: dd_Smed_v6_3715_0_1, dd_Smed_v6_3715_0_1, [RH, Score=244, Expect=6e-77]} {RNA1509_10159} {RNA1310_21525.1} {RNA815_8716}
7. MligTC455_54063 859 17.9 Mlig455_056400

Neo: -

Age: logFC(26M/2M)=0.402

 MRPL38 1.766 - 0.957 - 0.809 - - Mlig455_056400 {REF} {Length: 1562} {TRANSSPLICED} {Pfam: Phosphatidylethanolamine-binding protein [PF01161.22, score=42.9]} {Human: ENSG00000204316, MRPL38, mitochondrial ribosomal protein L38, [RH, Score=177, Expect=4e-51]} {Mouse: ENSMUSG00000020775, Mrpl38, mitochondrial ribosomal protein L38, [RH, Score=179, Expect=4e-52]} {Dmel: FBgn0030552, mRpL38, mitochondrial ribosomal protein L38, [RH, Score=213, Expect=6e-65]} {Celegans: WBGene00021327, mrpl-38, Mitochondrial Ribosomal Protein, Large, [RH, Score=144, Expect=4e-39]} {Smed: dd_Smed_v6_3715_0_1, dd_Smed_v6_3715_0_1, [RH, Score=245, Expect=2e-77]} {RNA1509_10159, RNA1509_23235} {RNA1310_21525.1, RNA1509_10159, RNA1509_23235} {RNA1509_10159, RNA1509_23235, RNA815_8716}
8. MligTC455_08353 1648 34.34 Mlig455_017215, Mlig455_017227, Mlig455_048178

Neo: -

Age: logFC(26M/2M)=0.382

Region-enriched R5: 1.213/0.00826

 APEX1, CPTP 1.716 - 0.950 - 0.766 - -

Mlig455_017215 {REF} {Length: 1946} {Pfam: Glycolipid transfer protein (GLTP) [PF08718.13, score=119.6]} {Human: ENSG00000224051, CPTP, ceramide-1-phosphate transfer protein, [RH, Score=135, Expect=7e-39]} {Mouse: ENSMUSG00000029073, Cptp, ceramide-1-phosphate transfer protein, [RH, Score=134, Expect=2e-38]} {Dmel: FBgn0050392, CG30392, [RH, Score=98.2, Expect=9e-25]} {Celegans: WBGene00018632, tag-296, [RH, Score=110, Expect=7e-29]} {Smed: dd_Smed_v6_4270_0_1, dd_Smed_v6_4270_0_1, [RH, Score=113, Expect=5e-31]} {RNA1509_18178} {RNA1310_20513} {RNA815_20813}

Mlig455_017227 {REF} {Length: 2412} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=67.4]; Endonuclease-reverse transcriptase [PF14529.8, score=23.7]} {Human: ENSG00000100823, APEX1, apurinic/apyrimidinic endodeoxyribonuclease 1, [RH, Score=307, Expect=4e-98]} {Mouse: ENSMUSG00000035960, Apex1, apurinic/apyrimidinic endonuclease 1, [RH, Score=311, Expect=1e-99]} {Dmel: FBgn0004584, Rrp1, Recombination repair protein 1, [RH, Score=300, Expect=1e-90]} {Celegans: WBGene00001372, exo-3, DNA-(apurinic or apyrimidinic site) lyase, [RH, Score=240, Expect=2e-73]} {Smed: dd_Smed_v6_11417_0_1, dd_Smed_v6_11417_0_1, [RH, Score=340, Expect=5e-111]} {RNA1509_14089} {RNA1310_25599} {RNA815_11218.1}

Mlig455_048178 {REF} {Length: 2334} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=68.1]; Endonuclease-reverse transcriptase [PF14529.8, score=23.0]} {Human: ENSG00000100823, APEX1, apurinic/apyrimidinic endodeoxyribonuclease 1, [RH, Score=301, Expect=5e-96]} {Mouse: ENSMUSG00000035960, Apex1, apurinic/apyrimidinic endonuclease 1, [RH, Score=305, Expect=1e-97]} {Dmel: FBgn0004584, Rrp1, Recombination repair protein 1, [RH, Score=296, Expect=2e-89]} {Celegans: WBGene00001372, exo-3, DNA-(apurinic or apyrimidinic site) lyase, [RH, Score=236, Expect=8e-72]} {Smed: dd_Smed_v6_11417_0_1, dd_Smed_v6_11417_0_1, [RH, Score=334, Expect=4e-109]} {RNA1509_14089} {RNA1310_25599} {RNA815_11218.1}
9. MligTC455_28552 131 2.72 Mlig455_070154

Neo: -

Age: Up-Down-Down

 0.977 - - - 0.977 - - Mlig455_070154 {REF} {Length: 5396} {TRANSSPLICED} {RNA1509_16314} {RNA1310_1850, RNA1509_16314} {RNA1509_16314, RNA815_2655.1}
10. MligTC455_52150 1796 37.43 Mlig455_017153, Mlig455_019691

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.317/0.00005

Regeneration-enriched R6: 1.860
Regeneration-enriched BL: 1.487

 NFYB 0.971 - - - - - 0.971

Mlig455_017153 {REF} {Length: 1341} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=92.1]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=24.4]} {Human: ENSG00000120837, NFYB, nuclear transcription factor Y subunit beta, [RH, Score=157, Expect=2e-48]} {Mouse: ENSMUSG00000020248, Nfyb, nuclear transcription factor-Y beta, [RH, Score=159, Expect=2e-49]} {Dmel: FBgn0032816, Nf-YB, Nuclear factor Y-box B, [RH, Score=137, Expect=2e-41]} {Celegans: WBGene00021132, nfyb-1, Nuclear transcription Factor Y, B (Beta) subunit, [RH, Score=126, Expect=8e-35]} {Smed: dd_Smed_v6_2532_0_1, dd_Smed_v6_2532_0_1, [RH, Score=159, Expect=2e-49]} {RNA1509_23597} {RNA1310_12347} {RNA815_3697}

Mlig455_019691 {REF} {Length: 1271} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=92.1]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=24.5]} {Human: ENSG00000120837, NFYB, nuclear transcription factor Y subunit beta, [RH, Score=158, Expect=1e-48]} {Mouse: ENSMUSG00000020248, Nfyb, nuclear transcription factor-Y beta, [RH, Score=159, Expect=2e-49]} {Dmel: FBgn0032816, Nf-YB, Nuclear factor Y-box B, [RH, Score=137, Expect=2e-41]} {Celegans: WBGene00021132, nfyb-1, Nuclear transcription Factor Y, B (Beta) subunit, [RH, Score=126, Expect=6e-35]} {Smed: dd_Smed_v6_2532_0_1, dd_Smed_v6_2532_0_1, [RH, Score=160, Expect=6e-50]} {RNA1509_21762, RNA1509_23597, RNA1509_4385} {RNA1310_12347, RNA1509_21762, RNA1509_23597, RNA1509_4385} {RNA1509_21762, RNA1509_23597, RNA1509_4385, RNA815_3697}
11. MligTC455_20304 53 1.1 Mlig455_062285

Neo: -

Age: -

 0.97 - - - 0.970 - - Mlig455_062285 {REF} {Length: 4605} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=38.2]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=36.9]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=23.7]} {RNA1509_28642} {RNA1310_30601} {RNA815_20505}
12. MligTC455_19223 419 8.73 Mlig455_036573

Neo: -

Age: -

Region-enriched R5: 3.465/0.00000

 0.967 - 0.967 - - - - Mlig455_036573 {REF} {Length: 541} {NoTransDecoderORF} {RNA1509_39234} {RNA1310_8765} {RNA815_981.2}
13. MligTC455_20566 1384 28.83 Mlig455_008463, Mlig455_008504

Neo: -

Age: -

Region-enriched R5: 1.202/0.00059

 TARDBP 0.964 - - - - - 0.964

Mlig455_008463 {REF} {Length: 4305} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=60.4]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=50.5]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=149, Expect=3e-41]; ENSG00000277726, AL109811.4, novel protein, [Score=148, Expect=4e-41]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=142, Expect=4e-39]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=148, Expect=5e-41]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=121, Expect=2e-30]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [Score=112, Expect=2e-27]} {RNA1509_16169} {RNA1310_17479.1, RNA1509_16169} {RNA1509_16169, RNA815_1821.1}

Mlig455_008504 {REF} {Length: 4320} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=61.1]; Transactive response DNA-binding protein N-terminal domain [PF18694.3, score=50.5]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.7]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=147, Expect=8e-41]; ENSG00000277726, AL109811.4, novel protein, [Score=147, Expect=8e-41]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=142, Expect=9e-39]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=147, Expect=1e-40]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=119, Expect=8e-30]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [Score=111, Expect=4e-27]} {RNA1509_16169, RNA1509_22053, RNA1509_34373, RNA1509_35108, RNA1509_45413} {RNA1310_17479.1, RNA1509_22053, RNA1509_34373, RNA1509_35108, RNA1509_45413} {RNA1509_22053, RNA1509_34373, RNA1509_35108, RNA1509_45413, RNA815_1821.1}
14. MligTC455_07316 373 7.77 Mlig455_000488

Neo: Irradiation

Age: Down-Up-Down

 SIN3A 0.962 - - 0.962 - - - Mlig455_000488 {REF} {Length: 4419} {TRANSSPLICED} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=95.9]; Paired amphipathic helix repeat [PF02671.23, score=90.8]; Sin3 family co-repressor [PF08295.14, score=90.8]} {Human: ENSG00000169375, SIN3A, SIN3 transcription regulator family member A, [Score=299, Expect=2e-83]} {Mouse: ENSMUSG00000042557, Sin3a, transcriptional regulator, SIN3A (yeast), [Score=338, Expect=5e-97]} {Dmel: FBgn0022764, Sin3A, [Score=250, Expect=3e-67]} {Celegans: WBGene00004117, sin-3, Paired amphipathic helix protein sin-3, [Score=110, Expect=5e-24]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [Score=211, Expect=2e-55]} {RNA1509_41252, RNA1509_4899} {RNA1310_4266.2, RNA1509_41252, RNA1509_4899} {RNA1509_41252, RNA1509_4899, RNA815_1997}
15. MligTC455_50968 639 13.32 Mlig455_054324

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.314

 SH3BGRL3 0.959 - 0.959 - - - - Mlig455_054324 {REF} {Length: 1692} {Pfam: SH3-binding, glutamic acid-rich protein [PF04908.17, score=75.2]} {Human: ENSG00000142669, SH3BGRL3, SH3 domain binding glutamate rich protein like 3, [Score=53.5, Expect=8e-09]} {Mouse: ENSMUSG00000028843, Sh3bgrl3, SH3 domain binding glutamic acid-rich protein-like 3, [Score=58.5, Expect=8e-11]} {Dmel: FBgn0035772, Sh3beta, [Score=60.1, Expect=2e-10]} {Celegans: WBGene00013666, Y105E8A.1, [RH, Score=59.3, Expect=5e-11]} {Smed: dd_Smed_v6_4404_0_1, dd_Smed_v6_4404_0_1, [Score=97.4, Expect=1e-23]} {RNA1509_39577, RNA1509_41483} {RNA1310_36951, RNA1509_39577, RNA1509_41483} {RNA1509_39577, RNA1509_41483, RNA815_11322.1}
16. MligTC455_22531 642 13.38 Mlig455_003820, Mlig455_019969, Mlig455_033265, Mlig455_048427, Mlig455_048495, Mlig455_048570, Mlig455_049044

Neo: -

Age: -

 RAD54L 0.957 - - - - - 0.957

Mlig455_003820 {REF} {Length: 560} {Pfam: DDE superfamily endonuclease [PF13358.8, score=40.0]} {Smed: dd_Smed_v6_66824_0_1, dd_Smed_v6_66824_0_1, [Score=79.7, Expect=7e-20]} {RNA1509_20978} {RNA1310_8640} {RNA815_3193.1}

Mlig455_019969 {REF} {Length: 1046} {Pfam: Homeodomain-like domain [PF13384.8, score=50.0]; DDE superfamily endonuclease [PF13358.8, score=39.2]; Helix-turn-helix domain [PF13518.8, score=38.4]; Winged helix-turn helix [PF13551.8, score=34.3]; Homeodomain-like domain [PF13565.8, score=30.0]; Transposase [PF01498.20, score=28.3]; Winged helix-turn-helix DNA-binding [PF13412.8, score=24.9]; Helix-turn-helix [PF01381.24, score=20.4]; Helix-turn-helix domain of resolvase [PF02796.17, score=20.0]; CENP-B N-terminal DNA-binding domain [PF04218.15, score=18.1]} {Smed: dd_Smed_v6_66824_0_1, dd_Smed_v6_66824_0_1, [Score=82.4, Expect=9e-20]} {RNA1509_20978} {RNA1310_12978} {RNA815_3193.1}

Mlig455_033265 {REF} {Length: 560} {Pfam: DDE superfamily endonuclease [PF13358.8, score=39.9]} {Smed: dd_Smed_v6_66824_0_1, dd_Smed_v6_66824_0_1, [Score=82.4, Expect=5e-21]} {RNA1509_20978} {RNA1310_8640} {RNA815_3193.1}

Mlig455_048427 {REF} {Length: 872} {Pfam: DDE superfamily endonuclease [PF13358.8, score=39.6]; Homeodomain-like domain [PF13384.8, score=21.9]; Transposase [PF01498.20, score=21.2]; Helix-turn-helix [PF01381.24, score=20.9]} {Smed: dd_Smed_v6_66824_0_1, dd_Smed_v6_66824_0_1, [Score=82.4, Expect=5e-20]} {RNA1509_20978} {RNA1310_12978} {RNA815_3193.1}

Mlig455_048495 {REF} {Length: 3787} {Pfam: SNF2-related domain [PF00176.25, score=206.4]; Helicase conserved C-terminal domain [PF00271.33, score=52.6]; Homeodomain-like domain [PF13384.8, score=44.4]; Helix-turn-helix domain [PF13518.8, score=38.4]; DDE superfamily endonuclease [PF13358.8, score=36.4]; Winged helix-turn helix [PF13551.8, score=31.5]; Type III restriction enzyme, res subunit [PF04851.17, score=29.5]; Rad54 N terminal [PF08658.12, score=27.1]; Homeodomain-like domain [PF13565.8, score=25.8]; Helix-turn-helix [PF01381.24, score=23.9]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=22.0]; Transposase [PF01498.20, score=20.2]} {Human: ENSG00000085999, RAD54L, RAD54 like, [RH, Score=930, Expect=0.0]} {Mouse: ENSMUSG00000028702, Rad54l, RAD54 like (S. cerevisiae), [RH, Score=931, Expect=0.0]} {Dmel: FBgn0002989, okr, okra, [RH, Score=795, Expect=0.0]} {Celegans: WBGene00004298, rad-54, [RH, Score=804, Expect=0.0]} {Smed: dd_Smed_v6_15532_0_1, dd_Smed_v6_15532_0_1, [RH, Score=947, Expect=0.0]} {RNA1509_38919} {RNA1310_7218} {RNA815_1852.1}

Mlig455_048570 {REF} {Length: 872} {Pfam: DDE superfamily endonuclease [PF13358.8, score=39.6]; Homeodomain-like domain [PF13384.8, score=21.9]; Transposase [PF01498.20, score=21.2]; Helix-turn-helix [PF01381.24, score=20.9]} {Smed: dd_Smed_v6_66824_0_1, dd_Smed_v6_66824_0_1, [Score=82.4, Expect=5e-20]} {RNA1509_20978} {RNA1310_12978} {RNA815_3193.1}

Mlig455_049044 {REF} {Length: 965} {Pfam: DDE superfamily endonuclease [PF13358.8, score=37.0]; Homeodomain-like domain [PF13384.8, score=21.1]} {Smed: dd_Smed_v6_66824_0_1, dd_Smed_v6_66824_0_1, [Score=82.8, Expect=6e-20]} {RNA1509_20978} {RNA1310_12978} {RNA815_3193.1}
17. MligTC455_41113 631 13.14 Mlig455_053556

Neo: -

Age: -

Region-enriched R5: 1.520/0.04923

 OPA1 0.957 - 0.957 - - - - Mlig455_053556 {REF} {Length: 3245} {TRANSSPLICED} {Pfam: Dynamin-like GTPase OPA1 C-terminal [PF19434.1, score=602.1]; Dynamin family [PF00350.25, score=122.8]; 50S ribosome-binding GTPase [PF01926.25, score=23.5]} {Human: ENSG00000198836, OPA1, OPA1, mitochondrial dynamin like GTPase, [RH, Score=730, Expect=0.0]} {Mouse: ENSMUSG00000038084, Opa1, OPA1, mitochondrial dynamin like GTPase, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0261276, Opa1, Optic atrophy 1, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001134, eat-3, [RH, Score=701, Expect=0.0]} {Smed: dd_Smed_v6_7981_0_2, dd_Smed_v6_7981_0_2, [RH, Score=644, Expect=0.0]} {RNA1509_34607, RNA1509_45369} {RNA1310_4411, RNA1509_45369} {RNA1509_45369, RNA815_1436}
18. MligTC455_54218 213 4.43 Mlig455_041305

Neo: -

Age: -

 NUP93 0.954 - 0.954 - - - - Mlig455_041305 {REF} {Length: 2870} {TRANSSPLICED} {Pfam: Nup93/Nic96 [PF04097.16, score=336.6]} {Human: ENSG00000102900, NUP93, nucleoporin 93, [Score=401, Expect=5e-127]} {Mouse: ENSMUSG00000032939, Nup93, nucleoporin 93, [Score=403, Expect=5e-128]} {Dmel: FBgn0038274, Nup93-2, Nucleoporin 93kD-2, [Score=274, Expect=4e-80]} {Smed: dd_Smed_v6_9207_0_1, dd_Smed_v6_9207_0_1, [Score=290, Expect=9e-86]} {RNA1509_8355} {RNA1310_4739} {RNA815_23464}
19. MligTC455_16065 242 5.04 Mlig455_002617

Neo: -

Age: -

 FBXO42 0.953 - 0.953 - - - - Mlig455_002617 {REF} {Length: 2398} {TRANSSPLICED} {Pfam: Kelch motif [PF13854.8, score=78.2]; Galactose oxidase, central domain [PF13418.8, score=73.7]; Galactose oxidase, central domain [PF13415.8, score=64.6]; Kelch motif [PF13964.8, score=57.9]; Kelch motif [PF01344.27, score=52.0]; Kelch motif [PF07646.17, score=28.0]} {Human: ENSG00000037637, FBXO42, F-box protein 42, [RH, Score=89.0, Expect=7e-18]} {Mouse: ENSMUSG00000028920, Fbxo42, F-box protein 42, [RH, Score=87.8, Expect=9e-18]} {RNA1509_24471, RNA1509_42618} {RNA1310_13364.1, RNA1509_24471, RNA1509_42618} {RNA1509_24471, RNA1509_42618, RNA815_14795}
20. MligTC455_26482 390 8.12 Mlig455_023827

Neo: -

Age: Up-Down-Up

 CCDC88A 0.953 - 0.953 - - - - Mlig455_023827 {REF} {Length: 4847} {Pfam: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=20.7]} {Human: ENSG00000115355, CCDC88A, coiled-coil domain containing 88A, [Score=80.9, Expect=1e-14]} {Mouse: ENSMUSG00000032740, Ccdc88a, coiled coil domain containing 88A, [Score=73.9, Expect=9e-13]} {Dmel: FBgn0283724, Girdin, [Score=78.6, Expect=2e-14]} {Smed: dd_Smed_v6_5291_0_2, dd_Smed_v6_5291_0_2, [Score=82.8, Expect=6e-16]} {RNA1509_18704} {RNA1310_2232.1} {RNA815_6605}
21. MligTC455_45353 176 3.67 Mlig455_052837

Neo: -

Age: -

 PITHD1 0.953 - 0.953 - - - - Mlig455_052837 {REF} {Length: 3030} {TRANSSPLICED} {Pfam: PITH domain [PF06201.15, score=130.4]; Gemini of Cajal bodies-associated protein 8 [PF15348.8, score=72.6]} {Human: ENSG00000057757, PITHD1, PITH domain containing 1, [RH, Score=177, Expect=2e-52]} {Mouse: ENSMUSG00000028669, Pithd1, PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1, [RH, Score=174, Expect=2e-51]} {Dmel: FBgn0032445, CG6153, [RH, Score=187, Expect=1e-56]} {Celegans: WBGene00022704, ZK353.9, PITH domain-containing protein ZK353.9, [RH, Score=186, Expect=5e-56]} {Smed: dd_Smed_v6_3842_2_1, dd_Smed_v6_3842_2_1, [RH, Score=166, Expect=9e-49]} {RNA1509_48861, RNA1509_6597} {RNA1310_35293, RNA1509_48861} {RNA1509_48861, RNA815_4013}
22. MligTC455_19942 770 16.04 Mlig455_045672

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.530/0.00045

Regeneration-upregulated BL: 2.332

Regeneration-enriched BL: 2.332

 RNPS1 0.952 - - - - - 0.952 Mlig455_045672 {REF} {Length: 1204} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=46.9]} {Human: ENSG00000205937, RNPS1, RNA binding protein with serine rich domain 1, [RH, Score=119, Expect=6e-32]} {Mouse: ENSMUSG00000034681, Rnps1, ribonucleic acid binding protein S1, [RH, Score=119, Expect=7e-32]} {Dmel: FBgn0037707, RnpS1, RNA-binding protein S1, [RH, Score=94.0, Expect=5e-22]} {Celegans: WBGene00004388, rnp-5, RNP (RRM RNA binding domain) containing, [RH, Score=88.2, Expect=2e-20]} {Smed: dd_Smed_v6_1431_0_1, dd_Smed_v6_1431_0_1, [RH, Score=103, Expect=1e-25]} {RNA1509_14792} {RNA1310_28374, RNA1509_14792} {RNA1509_14792, RNA815_13087}
23. MligTC455_43628 537 11.19 Mlig455_001214

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.841/0.00696

Regeneration-upregulated BL: 2.235

Regeneration-enriched BL: 2.235

 G2E3 0.952 - - - - - 0.952 Mlig455_001214 {REF} {Length: 2124} {Pfam: PHD-like zinc-binding domain [PF13771.8, score=44.7]} {Human: ENSG00000092140, G2E3, G2/M-phase specific E3 ubiquitin protein ligase, [RH, Score=154, Expect=3e-40]} {Mouse: ENSMUSG00000035293, G2e3, G2/M-phase specific E3 ubiquitin ligase, [RH, Score=142, Expect=2e-36]; ENSMUSG00000021902, Phf7, PHD finger protein 7, [RH, Score=137, Expect=9e-37]} {Dmel: FBgn0005683, pie, pineapple eye, [RH, Score=110, Expect=6e-26]} {Smed: dd_Smed_v6_6301_0_1, dd_Smed_v6_6301_0_1, [RH, Score=116, Expect=3e-28]} {RNA1509_27373} {RNA1310_12923.1, RNA1509_27373} {RNA1509_27373, RNA815_4856}
24. MligTC455_51590 320 6.67 Mlig455_044222

Neo: -

Age: logFC(26M/2M)=0.392

 PARS2 0.952 - 0.952 - - - - Mlig455_044222 {REF} {Length: 2181} {TRANSSPLICED} {Pfam: tRNA synthetase class II core domain (G, H, P, S and T) [PF00587.27, score=104.4]} {Human: ENSG00000162396, PARS2, prolyl-tRNA synthetase 2, mitochondrial, [RH, Score=267, Expect=9e-84]} {Mouse: ENSMUSG00000043572, Pars2, prolyl-tRNA synthetase (mitochondrial)(putative), [RH, Score=267, Expect=7e-84]} {Dmel: FBgn0027082, ProRS-m, Prolyl-tRNA synthetase, mitochondrial, [RH, Score=263, Expect=1e-82]} {Celegans: WBGene00004190, pars-2, Prolyl Amino-acyl tRNA Synthetase, [RH, Score=230, Expect=3e-70]} {Smed: dd_Smed_v6_12333_0_1, dd_Smed_v6_12333_0_1, [RH, Score=298, Expect=1e-96]} {RNA1509_2645, RNA1509_54847} {RNA1310_14961.1, RNA1509_2645, RNA1509_54847} {RNA1509_2645, RNA1509_54847, RNA815_4246}
25. MligTC455_49423 101 2.1 Mlig455_026741

Neo: Int S/G2/M

Age: Up-Down-Down

 PPM1D 0.951 - - - 0.951 - - Mlig455_026741 {REF} {Length: 3895} {Pfam: Protein phosphatase 2C [PF00481.23, score=213.4]} {Human: ENSG00000170836, PPM1D, protein phosphatase, Mg2+/Mn2+ dependent 1D, [RH, Score=270, Expect=6e-82]} {Mouse: ENSMUSG00000020525, Ppm1d, protein phosphatase 1D magnesium-dependent, delta isoform, [RH, Score=268, Expect=2e-81]} {Dmel: FBgn0022768, Pp2C1, Protein phosphatase 2C, [RH, Score=306, Expect=6e-91]} {Celegans: WBGene00021856, Y54F10BM.1, [RH, Score=251, Expect=5e-74]} {Smed: dd_Smed_v6_56771_0_1, dd_Smed_v6_56771_0_1, [RH, Score=376, Expect=4e-127]} {RNA1509_9938} {RNA1310_10931} {RNA815_1300}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA