M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28552

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28552 131 2.72 Mlig455_070154

Neo: -

Age: Up-Down-Down

 Mlig455_070154 {REF} {Length: 5396} {TRANSSPLICED} {RNA1509_16314} {RNA1310_1850, RNA1509_16314} {RNA1509_16314, RNA815_2655.1}

Cumulative graph for MligTC455_28552

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.376 2.397 0.99977 1.00000
RegionR2 2.688 2.397 0.03876 0.22853
RegionR3 1.69 2.397 0.13023 0.61956
RegionR4 1.046 2.397 0.37727 0.70132
RegionR5 1.341 2.397 0.20667 0.50056
RegionR6 0.278 2.397 0.68206 1.00000
RegionR7 0.57 2.397 0.63974 1.00000
RegionR8 -3.237 2.397 0.99997 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.41 2.397 0.99992 1.00000
RegenerationR2 -0.13 2.397 0.81350 0.99392
RegenerationR3 -0.446 2.397 0.56535 0.89176
RegenerationR4 -0.61 2.397 0.44682 0.84020
RegenerationR5 -0.523 2.397 0.43617 0.82216
RegenerationR6 0.888 2.397 0.32256 0.66880
RegenerationBL -0.357 2.397 0.86677 1.00000
RegenerationTP 2.048 2.397 0.35522 0.79629


Genes with expression patterns similar to MligTC455_28552

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28552 131 2.72 Mlig455_070154

Neo: -

Age: Up-Down-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_070154 {REF} {Length: 5396} {TRANSSPLICED} {RNA1509_16314} {RNA1310_1850, RNA1509_16314} {RNA1509_16314, RNA815_2655.1}
2. MligTC455_13735 77 1.59 Mlig455_001782

Neo: -

Age: -

 1.795 - - - - 0.959 0.836 Mlig455_001782 {REF} {Length: 598} {NoTransDecoderORF}
3. MligTC455_20565 133 2.77 Mlig455_003453

Neo: -

Age: logFC(26M/2M)=-0.416

 AC008687.4 0.977 - - - 0.977 - - Mlig455_003453 {REF} {Length: 1701} {Human: ENSG00000268655, AC008687.4, uncharacterized LOC101059948, [RH, Score=115, Expect=6e-29]} {Smed: dd_Smed_v6_2796_0_1, dd_Smed_v6_2796_0_1, [Score=328, Expect=1e-111]} {RNA1509_6592} {RNA1310_21169} {RNA815_4111.1}
4. MligTC455_20414 341 7.11 Mlig455_001857

Neo: -

Age: -

 U2AF2 0.975 - - - - - 0.975 Mlig455_001857 {REF} {Length: 4922} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.2]; Occluded RNA-recognition motif [PF16842.7, score=24.1]; RNA recognition motif [PF16367.7, score=20.0]} {Human: ENSG00000063244, U2AF2, U2 small nuclear RNA auxiliary factor 2, [RH, Score=512, Expect=5e-179]} {Mouse: ENSMUSG00000030435, U2af2, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2, [RH, Score=512, Expect=3e-179]} {Dmel: FBgn0005411, U2af50, U2 small nuclear riboprotein auxiliary factor 50, [RH, Score=560, Expect=0.0]} {Celegans: WBGene00006697, uaf-1, Splicing factor U2AF 65 kDa subunit, [RH, Score=449, Expect=2e-154]} {Smed: dd_Smed_v6_3590_0_1, dd_Smed_v6_3590_0_1, [RH, Score=558, Expect=0.0]} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1310_13147.1, RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067} {RNA1509_25540, RNA1509_35646, RNA1509_3800, RNA1509_39764, RNA1509_45067, RNA815_6631}
5. MligTC455_24186 27 0.57 Mlig455_015406

Neo: -

Age: Down-Down-Up

 0.973 - - - - - 0.973 Mlig455_015406 {REF} {Length: 1189} {Pfam: Universal stress protein family [PF00582.28, score=99.0]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=120, Expect=2e-35]} {RNA1509_21807} {RNA1310_29361} {RNA815_14569}
6. MligTC455_12681 33 0.7 Mlig455_068475

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_068475 {REF} {Length: 2564} {NoTransDecoderORF} {RNA1509_52469} {RNA1310_36221} {RNA815_18198}
7. MligTC455_28213 41 0.86 Mlig455_043975

Neo: -

Age: -

Region-enriched R4: 1.672/0.04531

 0.966 - - - - 0.966 - Mlig455_043975 {REF} {Length: 2640} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=58.2, Expect=6e-08]} {RNA1509_245} {RNA1310_71097} {RNA815_18938.2}
8. MligTC455_38671 32 0.67 Mlig455_020877, Mlig455_060658

Neo: -

Age: -

 MAP3K7, RTL1 0.963 - - - - 0.963 -

Mlig455_020877 {REF} {Length: 1966} {Pfam: Protein kinase domain [PF00069.27, score=59.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.0]; MraW methylase family [PF01795.21, score=24.9]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=70.5, Expect=2e-12]; ENSG00000130758, MAP3K10, mitogen-activated protein kinase kinase kinase 10, [Score=69.3, Expect=7e-12]} {Mouse: ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=70.9, Expect=1e-12]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=70.1, Expect=1e-12]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=63.5, Expect=2e-10]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_8571_0_1, dd_Smed_v6_8571_0_1, [Score=64.3, Expect=7e-11]} {RNA1509_47567} {RNA1310_9609} {RNA815_3249.1}

Mlig455_060658 {REF} {Length: 6013} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=89.2]; Protein kinase domain [PF00069.27, score=56.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.1]; Integrase zinc binding domain [PF17921.3, score=47.1]; Integrase core domain [PF00665.28, score=44.2]; MraW methylase family [PF01795.21, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=88.2, Expect=1e-16]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=71.6, Expect=1e-11]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=71.2, Expect=6e-12]; ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=68.9, Expect=5e-11]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=62.4, Expect=2e-09]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.6, Expect=1e-07]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=309, Expect=2e-87]} {RNA1509_24311} {RNA1310_9609} {RNA815_3249.1}
9. MligTC455_44893 215 4.47 Mlig455_020672

Neo: Irradiation

Age: -

 SMARCC2 0.963 - - - 0.963 - - Mlig455_020672 {REF} {Length: 2246} {TRANSSPLICED} {Pfam: SWIRM domain [PF04433.19, score=107.7]; SWIRM-associated region 1 [PF16495.7, score=79.7]; SWIRM-associated domain at the C-terminal [PF16498.7, score=49.2]; Myb-like DNA-binding domain [PF00249.33, score=42.7]; Myb-like DNA-binding domain [PF13921.8, score=28.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [RH, Score=450, Expect=3e-144]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [RH, Score=451, Expect=8e-146]} {Dmel: FBgn0002783, mor, moira, [RH, Score=339, Expect=3e-103]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [RH, Score=331, Expect=1e-103]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [RH, Score=405, Expect=2e-127]} {RNA1509_39768, RNA1509_54926} {RNA1310_5494.1, RNA1509_39768, RNA1509_54926} {RNA1509_39768, RNA1509_54926, RNA815_8217}
10. MligTC455_15852 51 1.07 Mlig455_003883

Neo: -

Age: -

 BRF1 0.961 - - - - 0.961 - Mlig455_003883 {REF} {Length: 2870} {TRANSSPLICED} {Pfam: Transcription factor TFIIB repeat [PF00382.21, score=158.9]; Brf1-like TBP-binding domain [PF07741.15, score=57.5]; TFIIB zinc-binding [PF08271.14, score=40.6]; Cyclin, N-terminal domain [PF00134.25, score=23.2]} {Human: ENSG00000185024, BRF1, BRF1, RNA polymerase III transcription initiation factor subunit, [RH, Score=387, Expect=2e-123]} {Mouse: ENSMUSG00000011158, Brf1, BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit, [RH, Score=357, Expect=2e-112]} {Dmel: FBgn0038499, Brf, [RH, Score=330, Expect=2e-102]} {Celegans: WBGene00000271, brf-1, BRF (Transcription factor) homolog, [RH, Score=325, Expect=9e-100]} {Smed: dd_Smed_v6_1437_0_1, dd_Smed_v6_1437_0_1, [RH, Score=229, Expect=6e-66]} {RNA1509_17011} {RNA1310_6240.1} {RNA815_10656}
11. MligTC455_23560 52 1.07 Mlig455_045559

Neo: Int S/G2/M

Age: -

 0.955 - - - - 0.955 - Mlig455_045559 {REF} {Length: 2965} {NoTransDecoderORF} {RNA1509_52273} {RNA1310_21909.1} {RNA815_33762}
12. MligTC455_33475 168 3.5 Mlig455_036879

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.551

Region-enriched R8: 7.210/0.00005
Region-enriched R7: 5.996/0.00183

 0.955 - - - - 0.955 - Mlig455_036879 {REF} {Length: 2954} {RNA1509_20567} {RNA1310_1034.1} {RNA815_502.1}
13. MligTC455_51015 145 3.02 Mlig455_066002

Neo: -

Age: -

 CDYL2 0.953 - - - - 0.953 - Mlig455_066002 {REF} {Length: 4908} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=40.3]} {Human: ENSG00000166446, CDYL2, chromodomain Y like 2, [Score=56.2, Expect=9e-08]} {Mouse: ENSMUSG00000031758, Cdyl2, chromodomain protein, Y chromosome-like 2, [Score=55.8, Expect=8e-08]} {Dmel: FBgn0003607, Su(var)205, Suppressor of variegation 205, [Score=49.7, Expect=1e-06]} {Smed: dd_Smed_v6_11720_0_2, dd_Smed_v6_11720_0_2, [Score=62.0, Expect=5e-10]} {RNA1509_19839} {RNA1310_4755} {RNA815_1353.1}
14. MligTC455_38505 289 6.03 Mlig455_006520

Neo: Int S/G2/M

Age: Up-Down-Down

Region-specific R4: 2.408

 HASPIN 0.95 - - - - - 0.950 Mlig455_006520 {REF} {Length: 3897} {TRANSSPLICED} {Pfam: Haspin like kinase domain [PF12330.10, score=184.3]; Protein kinase domain [PF00069.27, score=19.3]} {Human: ENSG00000177602, HASPIN, histone H3 associated protein kinase, [Score=217, Expect=8e-60]} {Mouse: ENSMUSG00000050107, Haspin, histone H3 associated protein kinase, [Score=223, Expect=2e-62]} {Dmel: FBgn0046706, Haspin, [RH, Score=228, Expect=8e-66]} {Celegans: WBGene00007258, hasp-1, HASPin kinase related, [Score=189, Expect=5e-50]} {Smed: dd_Smed_v6_12380_0_1, dd_Smed_v6_12380_0_1, [Score=268, Expect=6e-80]} {RNA1509_15378, RNA1509_40648} {RNA1310_5814.1, RNA1509_15378, RNA1509_40648} {RNA1509_15378, RNA1509_40648, RNA815_8825}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA