M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20669

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20669 66 1.37 Mlig455_002412, Mlig455_060169

Neo: -

Age: -

Mlig455_002412 {REF} {Length: 519} {NoTransDecoderORF} {RNA1509_18177} {RNA1310_98164} {RNA815_37766}

Mlig455_060169 {REF} {Length: 1514} {Pfam: Family of unknown function (DUF5641) [PF18701.3, score=103.1]} {Smed: dd_Smed_v6_22202_0_1, dd_Smed_v6_22202_0_1, [Score=62.4, Expect=2e-12]} {RNA1509_18177} {RNA1310_519} {RNA815_37766}

Cumulative graph for MligTC455_20669

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.585 1.661 0.52407 1.00000
RegionR2 -0.017 1.661 0.88247 1.00000
RegionR3 0.557 1.661 0.61477 1.00000
RegionR4 0.196 1.661 0.78891 1.00000
RegionR5 0.412 1.661 0.67263 1.00000
RegionR6 -0.473 1.661 0.95977 1.00000
RegionR7 0.744 1.661 0.63074 1.00000
RegionR8 2.166 1.661 0.21361 0.81764

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.714 1.661 0.99992 1.00000
RegenerationR2 -0.668 1.661 0.50102 0.87198
RegenerationR3 0.031 1.661 0.97948 1.00000
RegenerationR4 0.724 1.661 0.38819 0.80645
RegenerationR5 0.741 1.661 0.32788 0.75052
RegenerationR6 1.313 1.661 0.19004 0.52784
RegenerationBL -2.089 1.661 0.21154 0.55525
RegenerationTP -0.074 1.661 0.94791 1.00000


Genes with expression patterns similar to MligTC455_20669

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20669 66 1.37 Mlig455_002412, Mlig455_060169

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000

Mlig455_002412 {REF} {Length: 519} {NoTransDecoderORF} {RNA1509_18177} {RNA1310_98164} {RNA815_37766}

Mlig455_060169 {REF} {Length: 1514} {Pfam: Family of unknown function (DUF5641) [PF18701.3, score=103.1]} {Smed: dd_Smed_v6_22202_0_1, dd_Smed_v6_22202_0_1, [Score=62.4, Expect=2e-12]} {RNA1509_18177} {RNA1310_519} {RNA815_37766}
2. MligTC455_16926 1129 23.52 Mlig455_046223

Neo: -

Age: -

 DARS 0.977 - - - 0.977 - - Mlig455_046223 {REF} {Length: 3094} {TRANSSPLICED} {Pfam: tRNA synthetases class II (D, K and N) [PF00152.22, score=256.9]; OB-fold nucleic acid binding domain [PF01336.27, score=30.9]; tRNA synthetases class II core domain (F) [PF01409.22, score=20.0]} {Human: ENSG00000115866, DARS, aspartyl-tRNA synthetase, [RH, Score=637, Expect=0.0]} {Mouse: ENSMUSG00000026356, Dars, aspartyl-tRNA synthetase, [RH, Score=642, Expect=0.0]} {Dmel: FBgn0002069, AspRS, Aspartyl-tRNA synthetase, [RH, Score=647, Expect=0.0]} {Celegans: WBGene00001094, dars-1, Aspartate--tRNA ligase, cytoplasmic, [RH, Score=635, Expect=0.0]} {Smed: dd_Smed_v6_2962_0_1, dd_Smed_v6_2962_0_1, [RH, Score=531, Expect=0.0]} {RNA1509_11128, RNA1509_23524, RNA1509_37471, RNA1509_40985, RNA1509_42643, RNA1509_59772} {RNA1310_9865, RNA1509_11128, RNA1509_23524, RNA1509_37471, RNA1509_40985, RNA1509_42643, RNA1509_59772} {RNA1509_11128, RNA1509_23524, RNA1509_37471, RNA1509_40985, RNA1509_42643, RNA1509_59772, RNA815_3815}
3. MligTC455_30097 144 2.99 Mlig455_006797

Neo: Irradiation

Age: logFC(26M/2M)=0.471

Region-enriched R5: 4.017/0.00000

 FGFR3 0.957 - - - 0.957 - - Mlig455_006797 {REF} {Length: 4185} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=260.4]; Protein kinase domain [PF00069.27, score=122.4]; Immunoglobulin domain [PF13927.8, score=34.4]; Immunoglobulin domain [PF13895.8, score=30.5]; Immunoglobulin domain [PF00047.27, score=26.6]; Immunoglobulin domain [PF18452.3, score=26.1]; Immunoglobulin I-set domain [PF07679.18, score=23.7]; Immunoglobulin V-set domain [PF07686.19, score=20.2]} {Human: ENSG00000068078, FGFR3, fibroblast growth factor receptor 3, [RH, Score=232, Expect=8e-64]; ENSG00000077782, FGFR1, fibroblast growth factor receptor 1, [RH, Score=224, Expect=2e-61]; ENSG00000160867, FGFR4, fibroblast growth factor receptor 4, [RH, Score=221, Expect=8e-60]} {Mouse: ENSMUSG00000054252, Fgfr3, fibroblast growth factor receptor 3, [RH, Score=230, Expect=3e-63]; ENSMUSG00000031565, Fgfr1, fibroblast growth factor receptor 1, [RH, Score=224, Expect=2e-61]; ENSMUSG00000005320, Fgfr4, fibroblast growth factor receptor 4, [RH, Score=219, Expect=1e-59]} {Dmel: FBgn0010389, htl, heartless, [RH, Score=222, Expect=3e-61]} {Celegans: WBGene00001184, egl-15, Myoblast growth factor receptor egl-15, [RH, Score=231, Expect=7e-63]} {Smed: dd_Smed_v6_11024_0_2, dd_Smed_v6_11024_0_2, [RH, Score=220, Expect=9e-60]} {RNA1509_21574} {RNA1310_2106.2} {RNA815_2648}
4. MligTC455_32845 1108 23.08 Mlig455_045530

Neo: -

Age: logFC(26M/2M)=0.181

 XPNPEP1 0.954 - - - 0.954 - - Mlig455_045530 {REF} {Length: 2956} {TRANSSPLICED} {Pfam: Metallopeptidase family M24 [PF00557.26, score=141.0]; Creatinase/Prolidase N-terminal domain [PF16189.7, score=105.5]; Creatinase/Prolidase N-terminal domain [PF01321.20, score=85.5]; C-terminal region of peptidase_M24 [PF16188.7, score=79.8]} {Human: ENSG00000108039, XPNPEP1, X-prolyl aminopeptidase 1, [RH, Score=540, Expect=0.0]} {Mouse: ENSMUSG00000025027, Xpnpep1, X-prolyl aminopeptidase (aminopeptidase P) 1, soluble, [RH, Score=534, Expect=0.0]} {Dmel: FBgn0026150, ApepP, Aminopeptidase P, [RH, Score=457, Expect=2e-154]} {Celegans: WBGene00000155, app-1, Xaa-Pro aminopeptidase app-1, [RH, Score=439, Expect=4e-147]} {Smed: dd_Smed_v6_4029_0_1, dd_Smed_v6_4029_0_1, [RH, Score=493, Expect=2e-168]} {RNA1509_11288, RNA1509_17092, RNA1509_20213, RNA1509_28257, RNA1509_49860, RNA1509_50061} {RNA1310_14022.2, RNA1509_11288, RNA1509_17092, RNA1509_20213, RNA1509_28257, RNA1509_49860, RNA1509_50061} {RNA1509_11288, RNA1509_17092, RNA1509_20213, RNA1509_28257, RNA1509_49860, RNA1509_50061, RNA815_8183.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA