M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20879

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20879 113 2.36 Mlig455_001891, Mlig455_069718

Neo: -

Age: -

Mlig455_001891 {REF} {Length: 948} {RNA1310_27941} {RNA815_395.1}

Mlig455_069718 {REF} {Length: 699} {RNA1310_29587} {RNA815_395.1}

Cumulative graph for MligTC455_20879

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.005 1.951 1.00000 1.00000
RegionR2 0.433 1.951 0.55236 0.91770
RegionR3 -2.936 1.951 1.00000 1.00000
RegionR4 2.93 1.951 0.03077 0.13831
RegionR5 -0.428 1.951 0.76169 1.00000
RegionR6 0.059 1.951 0.58950 1.00000
RegionR7 2.343 1.951 0.09190 0.58063
RegionR8 -1.395 1.951 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.325 1.951 0.42642 1.00000
RegenerationR2 0.34 1.951 0.70278 0.95721
RegenerationR3 2.467 1.951 0.10650 0.51607
RegenerationR4 -0.075 1.951 0.94676 1.00000
RegenerationR5 1.103 1.951 0.32761 0.75028
RegenerationR6 1.636 1.951 0.18874 0.52619
RegenerationBL -1.574 1.951 0.96702 1.00000
RegenerationTP 1.166 1.951 0.60224 0.96207


Genes with expression patterns similar to MligTC455_20879

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20879 113 2.36 Mlig455_001891, Mlig455_069718

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000

Mlig455_001891 {REF} {Length: 948} {RNA1310_27941} {RNA815_395.1}

Mlig455_069718 {REF} {Length: 699} {RNA1310_29587} {RNA815_395.1}
2. MligTC455_28694 130 2.71 Mlig455_022358, Mlig455_056417

Neo: -

Age: -

 1.766 - - - 0.790 0.976 -

Mlig455_022358 {REF} {Length: 3723} {Pfam: WSC domain [PF01822.21, score=51.5]; PAN domain [PF00024.28, score=22.7]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=46.2, Expect=9e-06]} {RNA1509_27921} {RNA1310_12910} {RNA815_27916}

Mlig455_056417 {REF} {Length: 1901} {Pfam: Integrase core domain [PF00665.28, score=39.8]} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=54.7, Expect=2e-09]} {RNA1509_27921} {RNA1310_246.1} {RNA815_27916}
3. MligTC455_48101 874 18.2 Mlig455_018395, Mlig455_069529

Neo: -

Age: Down-Up-Down

Region-enriched R2: 1.420/0.02237

 LRRC71 1.742 - - 0.790 - 0.952 -

Mlig455_018395 {REF} {Length: 2255} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=67.0]; Leucine Rich repeats (2 copies) [PF12799.9, score=25.6]; Leucine Rich Repeat [PF00560.35, score=24.4]} {Human: ENSG00000160838, LRRC71, leucine rich repeat containing 71, [RH, Score=199, Expect=3e-56]} {Mouse: ENSMUSG00000023084, Lrrc71, leucine rich repeat containing 71, [RH, Score=195, Expect=4e-55]} {Smed: dd_Smed_v6_12043_0_2, dd_Smed_v6_12043_0_2, [RH, Score=230, Expect=1e-69]} {RNA1509_18089} {RNA1310_2341.2} {RNA815_677.1}

Mlig455_069529 {REF} {Length: 2441} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=66.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=25.2]; Leucine Rich Repeat [PF00560.35, score=24.2]} {Human: ENSG00000160838, LRRC71, leucine rich repeat containing 71, [RH, Score=202, Expect=2e-57]} {Mouse: ENSMUSG00000023084, Lrrc71, leucine rich repeat containing 71, [RH, Score=198, Expect=4e-56]} {Smed: dd_Smed_v6_12043_0_2, dd_Smed_v6_12043_0_2, [RH, Score=227, Expect=2e-68]} {RNA1509_18089} {RNA1310_2341.2, RNA1509_18089} {RNA1509_18089, RNA815_677.1}
4. MligTC455_52409 790 16.46 Mlig455_031784

Neo: -

Age: Up-Down-Down

Regeneration-upregulated R6: 1.928

Regeneration-enriched R6: 1.928

 1.676 - - 0.702 - 0.974 - Mlig455_031784 {REF} {Length: 5819} {TRANSSPLICED} {Dmel: FBgn0053196, dpy, dumpy, [Score=58.9, Expect=5e-08]} {RNA1509_1380, RNA1509_21392, RNA1509_45445} {RNA1310_585.1, RNA1509_1380, RNA1509_21392, RNA1509_45445} {RNA1509_1380, RNA1509_21392, RNA1509_45445, RNA815_122.1}
5. MligTC455_26194 157 3.28 Mlig455_024082

Neo: -

Age: Up-Down-Up

Region-enriched R4: 3.176/0.00217

 PEF1 1.656 - - 0.702 - - 0.954 Mlig455_024082 {REF} {Length: 2386} {Pfam: EF-hand domain [PF13405.8, score=57.7]; EF hand [PF00036.34, score=54.7]; EF-hand domain pair [PF13499.8, score=52.8]; EF hand [PF13202.8, score=43.0]; EF-hand domain pair [PF13833.8, score=35.0]} {Human: ENSG00000162517, PEF1, penta-EF-hand domain containing 1, [Score=93.6, Expect=7e-22]} {Mouse: ENSMUSG00000028779, Pef1, penta-EF hand domain containing 1, [Score=94.4, Expect=2e-22]} {Dmel: FBgn0033529, CG17765, [Score=97.8, Expect=2e-24]} {Celegans: WBGene00019770, M04F3.4, [Score=84.0, Expect=9e-20]} {Smed: dd_Smed_v6_6190_0_1, dd_Smed_v6_6190_0_1, [Score=96.7, Expect=1e-24]} {RNA1509_8928} {RNA1310_11493} {RNA815_7652.1}
6. MligTC455_46149 747 15.56 Mlig455_023545, Mlig455_023652, Mlig455_023673

Neo: -

Age: -

 COQ4 0.976 - - - 0.976 - -

Mlig455_023545 {REF} {Length: 1302} {TRANSSPLICED} {Pfam: Coenzyme Q (ubiquinone) biosynthesis protein Coq4 [PF05019.15, score=259.4]} {Human: ENSG00000167113, COQ4, coenzyme Q4, [RH, Score=214, Expect=1e-68]} {Mouse: ENSMUSG00000026798, Coq4, coenzyme Q4, [RH, Score=209, Expect=2e-66]} {Dmel: FBgn0052174, CG32174, [RH, Score=201, Expect=2e-63]} {Celegans: WBGene00000764, coq-4, Ubiquinone biosynthesis protein coq-4, mitochondrial, [RH, Score=179, Expect=2e-55]} {Smed: dd_Smed_v6_8912_0_1, dd_Smed_v6_8912_0_1, [RH, Score=254, Expect=1e-84]} {RNA1509_22888, RNA1509_25136} {RNA1310_24601, RNA1509_22888} {RNA1509_22888, RNA815_12943.1}

Mlig455_023652 {REF} {Length: 1639} {TRANSSPLICED} {Pfam: Coenzyme Q (ubiquinone) biosynthesis protein Coq4 [PF05019.15, score=262.1]} {Human: ENSG00000167113, COQ4, coenzyme Q4, [RH, Score=215, Expect=9e-69]} {Mouse: ENSMUSG00000026798, Coq4, coenzyme Q4, [RH, Score=208, Expect=4e-66]} {Dmel: FBgn0052174, CG32174, [RH, Score=200, Expect=5e-63]} {Celegans: WBGene00000764, coq-4, Ubiquinone biosynthesis protein coq-4, mitochondrial, [RH, Score=179, Expect=1e-55]} {Smed: dd_Smed_v6_8912_0_1, dd_Smed_v6_8912_0_1, [RH, Score=254, Expect=2e-84]} {RNA1509_25136} {RNA1310_24601, RNA1509_25136} {RNA1509_25136, RNA815_12943.1}

Mlig455_023673 {REF} {Length: 1073} {TRANSSPLICED} {Pfam: Coenzyme Q (ubiquinone) biosynthesis protein Coq4 [PF05019.15, score=163.0]} {Human: ENSG00000167113, COQ4, coenzyme Q4, [Score=140, Expect=2e-40]} {Mouse: ENSMUSG00000026798, Coq4, coenzyme Q4, [Score=144, Expect=7e-42]} {Dmel: FBgn0052174, CG32174, [Score=130, Expect=8e-37]} {Celegans: WBGene00000764, coq-4, Ubiquinone biosynthesis protein coq-4, mitochondrial, [Score=115, Expect=2e-31]} {Smed: dd_Smed_v6_8912_0_1, dd_Smed_v6_8912_0_1, [Score=171, Expect=1e-52]} {RNA1509_25136} {RNA1310_24601} {RNA815_12943.1}
7. MligTC455_47065 145 3.01 Mlig455_052887

Neo: -

Age: Down-Up-Down

 MFSD8 0.969 - - - 0.969 - - Mlig455_052887 {REF} {Length: 3577} {Pfam: Major Facilitator Superfamily [PF07690.18, score=99.3]} {Human: ENSG00000164073, MFSD8, major facilitator superfamily domain containing 8, [RH, Score=325, Expect=6e-105]} {Mouse: ENSMUSG00000025759, Mfsd8, major facilitator superfamily domain containing 8, [RH, Score=319, Expect=8e-103]; ENSMUSG00000116169, Mfsd8, major facilitator superfamily domain containing 8, [RH, Score=319, Expect=8e-103]} {Dmel: FBgn0035767, Cln7, [RH, Score=283, Expect=1e-88]} {Celegans: WBGene00021814, Y53G8AR.7, [RH, Score=203, Expect=1e-58]} {Smed: dd_Smed_v6_10724_0_1, dd_Smed_v6_10724_0_1, [RH, Score=248, Expect=1e-75]} {RNA1509_13295} {RNA1310_13575.1} {RNA815_4756.1}
8. MligTC455_26843 1466 30.55 Mlig455_027363, Mlig455_036976

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_027363 {REF} {Length: 6573} {Celegans: WBGene00021577, Y46B2A.2, [Score=81.6, Expect=4e-17]} {RNA1509_13878} {RNA1310_3364.3} {RNA815_4829.1}

Mlig455_036976 {REF} {Length: 5511} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=176.0]} {Celegans: WBGene00022692, ZK250.9, [Score=277, Expect=2e-80]} {RNA1509_18422, RNA1509_59525} {RNA1310_3364.3, RNA1509_59525} {RNA1509_59525, RNA815_4829.1}
9. MligTC455_45148 212 4.41 Mlig455_027575

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.513

 0.963 - - - - 0.963 - Mlig455_027575 {REF} {Length: 3134} {Pfam: Prominin [PF05478.13, score=19.5]} {RNA1509_42069} {RNA1310_6083, RNA1509_42069} {RNA1509_42069, RNA815_5815}
10. MligTC455_12329 368 7.66 Mlig455_058803, Mlig455_058855

Neo: -

Age: -

 SLC27A1 0.962 - - 0.962 - - -

Mlig455_058803 {REF} {Length: 4339} {Pfam: AMP-binding enzyme [PF00501.30, score=46.0]} {Human: ENSG00000130304, SLC27A1, solute carrier family 27 member 1, [Score=99.0, Expect=5e-21]} {Mouse: ENSMUSG00000031808, Slc27a1, solute carrier family 27 (fatty acid transporter), member 1, [Score=100, Expect=1e-21]} {Dmel: FBgn0265187, CG44252, [Score=134, Expect=2e-32]} {Smed: dd_Smed_v6_4057_0_1, dd_Smed_v6_4057_0_1, [Score=102, Expect=1e-22]} {RNA1509_57030} {RNA1310_10536.1, RNA1509_57030} {RNA1509_57030, RNA815_6705.1}

Mlig455_058855 {REF} {Length: 2643} {Pfam: AMP-binding enzyme [PF00501.30, score=48.4]} {Human: ENSG00000130304, SLC27A1, solute carrier family 27 member 1, [Score=98.2, Expect=1e-20]} {Mouse: ENSMUSG00000031808, Slc27a1, solute carrier family 27 (fatty acid transporter), member 1, [Score=101, Expect=5e-22]; ENSMUSG00000024600, Slc27a6, solute carrier family 27 (fatty acid transporter), member 6, [Score=96.7, Expect=2e-20]} {Dmel: FBgn0265187, CG44252, [Score=136, Expect=3e-33]} {Smed: dd_Smed_v6_4057_0_1, dd_Smed_v6_4057_0_1, [Score=104, Expect=4e-23]} {RNA1509_57030} {RNA1310_10536.1} {RNA815_60362}
11. MligTC455_23412 90 1.88 Mlig455_015964

Neo: -

Age: Down-Up-Down

 0.962 - - 0.962 - - - Mlig455_015964 {REF} {Length: 4024} {Pfam: Intra-flagellar transport protein 57 [PF10498.11, score=19.8]} {RNA1509_46835} {RNA1310_11201.1} {RNA815_31251}
12. MligTC455_25169 62 1.29 Mlig455_017959

Neo: Irradiation

Age: -

 SPECC1L 0.961 - - - 0.961 - - Mlig455_017959 {REF} {Length: 4845} {TRANSSPLICED} {Pfam: Calponin homology (CH) domain [PF00307.33, score=68.3]; CAMSAP CH domain [PF11971.10, score=22.3]} {Human: ENSG00000100014, SPECC1L, sperm antigen with calponin homology and coiled-coil domains 1 like, [RH, Score=264, Expect=5e-73]} {Mouse: ENSMUSG00000033444, Specc1l, sperm antigen with calponin homology and coiled-coil domains 1-like, [RH, Score=261, Expect=3e-72]} {Dmel: FBgn0025633, CG13366, [RH, Score=187, Expect=3e-48]} {Celegans: WBGene00020530, T15B12.1, [Score=128, Expect=3e-31]} {Smed: dd_Smed_v6_7845_0_1, dd_Smed_v6_7845_0_1, [Score=159, Expect=7e-40]} {RNA1509_39130, RNA1509_7795} {RNA1310_10182.1, RNA1509_39130, RNA1509_7795} {RNA1509_39130, RNA1509_7795, RNA815_11375}
13. MligTC455_24110 365 7.6 Mlig455_009975

Neo: -

Age: -

 C12orf56 0.956 - - 0.956 - - - Mlig455_009975 {REF} {Length: 2226} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF4551) [PF15087.8, score=105.9]} {Human: ENSG00000185306, C12orf56, chromosome 12 open reading frame 56, [RH, Score=85.1, Expect=1e-16]} {Mouse: ENSMUSG00000047642, D930020B18Rik, RIKEN cDNA D930020B18 gene, [RH, Score=72.8, Expect=8e-13]} {RNA1509_17842} {RNA1310_20322, RNA1509_17842} {RNA1509_17842, RNA815_23342}
14. MligTC455_09664 40 0.84 Mlig455_008164, Mlig455_008202, Mlig455_069585

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_008164 {REF} {Length: 176} {NoTransDecoderORF}

Mlig455_008202 {REF} {Length: 1122} {NoTransDecoderORF} {RNA1509_8906} {RNA1310_1712.1} {RNA815_474.1}

Mlig455_069585 {REF} {Length: 1108} {NoTransDecoderORF} {RNA1509_8906} {RNA1310_1712.1} {RNA815_474.1}
15. MligTC455_35498 113 2.36 Mlig455_035866, Mlig455_035904

Neo: -

Age: -

 PDZRN3 0.953 - - 0.953 - - -

Mlig455_035866 {REF} {Length: 2211} {Pfam: Ring finger domain [PF13639.8, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.0]; RING-type zinc-finger [PF13445.8, score=34.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=32.9]; zinc-RING finger domain [PF14634.8, score=27.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=27.4]; Prokaryotic RING finger family 4 [PF14447.8, score=26.8]; RING-H2 zinc finger domain [PF12678.9, score=24.6]; U-box domain [PF04564.17, score=20.1]} {Human: ENSG00000121440, PDZRN3, PDZ domain containing ring finger 3, [Score=84.3, Expect=3e-17]} {Mouse: ENSMUSG00000035357, Pdzrn3, PDZ domain containing RING finger 3, [Score=87.0, Expect=3e-18]} {Dmel: FBgn0283649, elgi, early girl, [Score=68.2, Expect=1e-12]} {Celegans: WBGene00003917, par-2, [Score=46.6, Expect=1e-05]} {Smed: dd_Smed_v6_6297_0_2, dd_Smed_v6_6297_0_2, [Score=76.3, Expect=4e-16]} {RNA1509_21750} {RNA1310_3628.1, RNA1509_21750} {RNA1509_21750, RNA815_13059}

Mlig455_035904 {REF} {Length: 1055} {Pfam: Ring finger domain [PF13639.8, score=35.4]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.0]; RING-type zinc-finger [PF13445.8, score=34.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=32.9]; zinc-RING finger domain [PF14634.8, score=27.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=27.4]; Prokaryotic RING finger family 4 [PF14447.8, score=26.8]; RING-H2 zinc finger domain [PF12678.9, score=24.6]; U-box domain [PF04564.17, score=20.1]} {Human: ENSG00000121440, PDZRN3, PDZ domain containing ring finger 3, [Score=84.3, Expect=3e-17]} {Mouse: ENSMUSG00000035357, Pdzrn3, PDZ domain containing RING finger 3, [Score=87.0, Expect=3e-18]} {Dmel: FBgn0283649, elgi, early girl, [Score=68.2, Expect=1e-12]} {Celegans: WBGene00003917, par-2, [Score=46.6, Expect=1e-05]} {Smed: dd_Smed_v6_6297_0_2, dd_Smed_v6_6297_0_2, [Score=76.3, Expect=4e-16]} {RNA1310_50535} {RNA815_38693}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA