Data search
Results for MligTC455_20941
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_20941 | 1033 | 21.52 | Mlig455_016229 | Neo: - Age: - Regeneration-upregulated BL: 1.508 Regeneration-enriched BL: 1.508 |
RNASET2 | Mlig455_016229 {REF} {Length: 1875} {Pfam: Ribonuclease T2 family [PF00445.20, score=146.2]} {Human: ENSG00000026297, RNASET2, ribonuclease T2, [RH, Score=103, Expect=2e-25]} {Mouse: ENSMUSG00000116988, AC164314.2, novel transcript, [RH, Score=112, Expect=4e-29]; ENSMUSG00000095687, Rnaset2a, ribonuclease T2A, [RH, Score=112, Expect=4e-29]; ENSMUSG00000116876, AC122413.2, novel protein, Rnaset2b-Gm1604b readthrough, [RH, Score=112, Expect=4e-29]; ENSMUSG00000094724, Rnaset2b, ribonuclease T2B, [RH, Score=112, Expect=4e-29]} {Dmel: FBgn0010406, RNaseX25, Ribonuclease X25, [RH, Score=108, Expect=4e-27]} {Celegans: WBGene00019624, K10C9.3, [RH, Score=97.4, Expect=2e-23]} {Smed: dd_Smed_v6_6454_0_1, dd_Smed_v6_6454_0_1, [RH, Score=103, Expect=4e-26]} {RNA1509_30855, RNA1509_48421} {RNA1310_7030, RNA1509_30855} {RNA1509_30855, RNA815_7634.1} |
Cumulative graph for MligTC455_20941
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.149 | 4.64 | 0.86541 | 1.00000 | |
| RegionR2 | -0.426 | 4.64 | 0.34562 | 0.73792 | |
| RegionR3 | 0.076 | 4.64 | 0.82957 | 1.00000 | |
| RegionR4 | 0.075 | 4.64 | 0.84907 | 1.00000 | |
| RegionR5 | 0.142 | 4.64 | 0.66346 | 1.00000 | |
| RegionR6 | 0.134 | 4.64 | 0.71108 | 1.00000 | |
| RegionR7 | 0.353 | 4.64 | 0.43157 | 1.00000 | |
| RegionR8 | -0.502 | 4.64 | 0.44305 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.186 | 4.64 | 0.87289 | 1.00000 | |
| RegenerationR2 | -0.052 | 4.64 | 0.89775 | 1.00000 | |
| RegenerationR3 | 0.158 | 4.64 | 0.70152 | 0.94798 | |
| RegenerationR4 | 0.375 | 4.64 | 0.35209 | 0.78181 | |
| RegenerationR5 | 0.509 | 4.64 | 0.18760 | 0.61782 | |
| RegenerationR6 | 0.72 | 4.64 | 0.08106 | 0.35549 | |
| RegenerationBL | 1.508 | 4.64 | 0.00024 | 0.00842 | Specific for BL: 1.508 |
| RegenerationTP | 0.412 | 4.64 | 0.43859 | 0.85907 |
Genes with expression patterns similar to MligTC455_20941
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_20941 | 1033 | 21.52 | Mlig455_016229 | Neo: - Age: - Regeneration-upregulated BL: 1.508 Regeneration-enriched BL: 1.508 |
RNASET2 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_016229 {REF} {Length: 1875} {Pfam: Ribonuclease T2 family [PF00445.20, score=146.2]} {Human: ENSG00000026297, RNASET2, ribonuclease T2, [RH, Score=103, Expect=2e-25]} {Mouse: ENSMUSG00000116988, AC164314.2, novel transcript, [RH, Score=112, Expect=4e-29]; ENSMUSG00000095687, Rnaset2a, ribonuclease T2A, [RH, Score=112, Expect=4e-29]; ENSMUSG00000116876, AC122413.2, novel protein, Rnaset2b-Gm1604b readthrough, [RH, Score=112, Expect=4e-29]; ENSMUSG00000094724, Rnaset2b, ribonuclease T2B, [RH, Score=112, Expect=4e-29]} {Dmel: FBgn0010406, RNaseX25, Ribonuclease X25, [RH, Score=108, Expect=4e-27]} {Celegans: WBGene00019624, K10C9.3, [RH, Score=97.4, Expect=2e-23]} {Smed: dd_Smed_v6_6454_0_1, dd_Smed_v6_6454_0_1, [RH, Score=103, Expect=4e-26]} {RNA1509_30855, RNA1509_48421} {RNA1310_7030, RNA1509_30855} {RNA1509_30855, RNA815_7634.1} |
| 2. | MligTC455_20942 | 1043 | 21.72 | Mlig455_054258 | Neo: - Age: Down-Down-Up |
RNASET2 | 4.535 | - | 0.909 | 0.770 | 0.969 | 0.956 | 0.931 | Mlig455_054258 {REF} {Length: 1367} {Pfam: Ribonuclease T2 family [PF00445.20, score=145.9]} {Human: ENSG00000026297, RNASET2, ribonuclease T2, [RH, Score=105, Expect=3e-26]} {Mouse: ENSMUSG00000094724, Rnaset2b, ribonuclease T2B, [RH, Score=114, Expect=9e-30]; ENSMUSG00000116876, AC122413.2, novel protein, Rnaset2b-Gm1604b readthrough, [RH, Score=114, Expect=9e-30]; ENSMUSG00000116988, AC164314.2, novel transcript, [RH, Score=114, Expect=9e-30]; ENSMUSG00000095687, Rnaset2a, ribonuclease T2A, [RH, Score=114, Expect=9e-30]} {Dmel: FBgn0010406, RNaseX25, Ribonuclease X25, [RH, Score=107, Expect=4e-27]} {Celegans: WBGene00019624, K10C9.3, [RH, Score=99.4, Expect=2e-24]} {Smed: dd_Smed_v6_6454_0_1, dd_Smed_v6_6454_0_1, [RH, Score=106, Expect=2e-27]} {RNA1509_48421} {RNA1310_7762} {RNA815_7634.1} |
| 3. | MligTC455_39905 | 1292 | 26.92 | Mlig455_032347, Mlig455_032366 | Neo: - Age: - Regeneration-upregulated BL: 1.900 Regeneration-enriched BL: 1.900 |
MTMR2 | 1.781 | - | - | - | 0.956 | 0.825 | - | Mlig455_032347 {REF} {Length: 2980} {TRANSSPLICED} {Pfam: Myotubularin-like phosphatase domain [PF06602.16, score=467.7]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=21.9]; GRAM domain [PF02893.22, score=21.4]} {Human: ENSG00000087053, MTMR2, myotubularin related protein 2, [RH, Score=538, Expect=0.0]} {Mouse: ENSMUSG00000031918, Mtmr2, myotubularin related protein 2, [RH, Score=531, Expect=0.0]; ENSMUSG00000031337, Mtm1, X-linked myotubular myopathy gene 1, [RH, Score=505, Expect=2e-173]} {Dmel: FBgn0025742, mtm, myotubularin, [RH, Score=503, Expect=1e-172]} {Celegans: WBGene00003475, mtm-1, Myotubularin-related protein 1, [RH, Score=413, Expect=3e-138]} {Smed: dd_Smed_v6_4948_0_1, dd_Smed_v6_4948_0_1, [RH, Score=404, Expect=7e-135]} {RNA1509_34099} {RNA1310_4997} {RNA815_1735.1} Mlig455_032366 {REF} {Length: 3374} {TRANSSPLICED} {Pfam: Myotubularin-like phosphatase domain [PF06602.16, score=467.6]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=21.8]; GRAM domain [PF02893.22, score=21.4]} {Human: ENSG00000087053, MTMR2, myotubularin related protein 2, [RH, Score=538, Expect=0.0]} {Mouse: ENSMUSG00000031918, Mtmr2, myotubularin related protein 2, [RH, Score=530, Expect=0.0]; ENSMUSG00000031337, Mtm1, X-linked myotubular myopathy gene 1, [RH, Score=504, Expect=4e-173]} {Dmel: FBgn0025742, mtm, myotubularin, [RH, Score=500, Expect=1e-171]} {Celegans: WBGene00003475, mtm-1, Myotubularin-related protein 1, [RH, Score=412, Expect=6e-138]} {Smed: dd_Smed_v6_4948_0_1, dd_Smed_v6_4948_0_1, [RH, Score=398, Expect=2e-132]} {RNA1509_34099, RNA1509_38063, RNA1509_48836, RNA1509_9779} {RNA1310_4997, RNA1509_34099, RNA1509_38063, RNA1509_48836, RNA1509_9779} {RNA1509_34099, RNA1509_38063, RNA1509_48836, RNA1509_9779, RNA815_1735.1} |
| 4. | MligTC455_09112 | 179 | 3.73 | Mlig455_032061 | Neo: - Age: Down-Up-Up |
0.974 | - | - | - | - | - | 0.974 | Mlig455_032061 {REF} {Length: 945} {RNA1509_33478} {RNA1310_75644} {RNA815_39109} | |
| 5. | MligTC455_47389 | 1959 | 40.8 | Mlig455_012972 | Neo: - Age: - |
SEC13 | 0.963 | - | - | - | 0.963 | - | - | Mlig455_012972 {REF} {Length: 1565} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=74.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=30.7]} {Human: ENSG00000157020, SEC13, SEC13 homolog, nuclear pore and COPII coat complex component, [RH, Score=386, Expect=2e-134]} {Mouse: ENSMUSG00000030298, Sec13, SEC13 homolog, nuclear pore and COPII coat complex component, [RH, Score=385, Expect=2e-134]} {Dmel: FBgn0024509, Sec13, Secretory 13, [RH, Score=332, Expect=4e-113]} {Celegans: WBGene00003806, npp-20, Protein SEC13 homolog, [RH, Score=246, Expect=5e-80]} {Smed: dd_Smed_v6_836_0_1, dd_Smed_v6_836_0_1, [RH, Score=315, Expect=4e-107]} {RNA1509_10731, RNA1509_19689, RNA1509_32561, RNA1509_40360, RNA1509_49501, RNA1509_52881, RNA1509_6799} {RNA1310_20303, RNA1509_10731, RNA1509_19689, RNA1509_32561, RNA1509_40360, RNA1509_49501, RNA1509_52881, RNA1509_6799} {RNA1509_10731, RNA1509_19689, RNA1509_32561, RNA1509_40360, RNA1509_49501, RNA1509_52881, RNA1509_6799, RNA815_8231} |
| 6. | MligTC455_43197 | 2985 | 62.18 | Mlig455_005091, Mlig455_005219 | Neo: - Age: - Regeneration-upregulated BL: 1.707 Regeneration-enriched BL: 1.707 |
SMARCD1 | 0.96 | - | - | - | 0.960 | - | - | Mlig455_005091 {REF} {Length: 2227} {Pfam: SWIB/MDM2 domain [PF02201.20, score=55.0]} {Human: ENSG00000066117, SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=7e-170]} {Mouse: ENSMUSG00000023018, Smarcd1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=9e-170]} {Dmel: FBgn0025463, Bap60, Brahma associated protein 60kD, [RH, Score=473, Expect=3e-163]} {Celegans: WBGene00044072, ham-3, [RH, Score=420, Expect=2e-143]} {Smed: dd_Smed_v6_3916_0_1, dd_Smed_v6_3916_0_1, [RH, Score=429, Expect=5e-147]} {RNA1509_5497} {RNA1310_11706, RNA1509_5497} {RNA1509_5497, RNA815_6713} Mlig455_005219 {REF} {Length: 2215} {TRANSSPLICED} {Pfam: SWIB/MDM2 domain [PF02201.20, score=55.0]} {Human: ENSG00000066117, SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=7e-170]} {Mouse: ENSMUSG00000023018, Smarcd1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=9e-170]} {Dmel: FBgn0025463, Bap60, Brahma associated protein 60kD, [RH, Score=473, Expect=3e-163]} {Celegans: WBGene00044072, ham-3, [RH, Score=420, Expect=2e-143]} {Smed: dd_Smed_v6_3916_0_1, dd_Smed_v6_3916_0_1, [RH, Score=429, Expect=5e-147]} {RNA1509_5497} {RNA1310_11706} {RNA815_6713} |
| 7. | MligTC455_25118 | 800 | 16.66 | Mlig455_045721 | Neo: Int S/G2/M Age: - |
SIL1 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_045721 {REF} {Length: 2078} {TRANSSPLICED} {Pfam: Nucleotide exchange factor Fes1 [PF08609.12, score=22.4]} {Human: ENSG00000120725, SIL1, SIL1 nucleotide exchange factor, [RH, Score=191, Expect=1e-54]} {Mouse: ENSMUSG00000024357, Sil1, endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae), [RH, Score=189, Expect=5e-54]} {Dmel: FBgn0039296, CG10420, [RH, Score=131, Expect=3e-33]} {Smed: dd_Smed_v6_5534_0_1, dd_Smed_v6_5534_0_1, [RH, Score=203, Expect=5e-60]} {RNA1509_50296, RNA1509_8971} {RNA1310_12636, RNA1509_50296, RNA1509_8971} {RNA1509_50296, RNA1509_8971, RNA815_4540} |
| 8. | MligTC455_25438 | 658 | 13.7 | Mlig455_006273 | Neo: Int S/G2/M Age: Down-Down-Up, logFC(26M/2M)=1.927 Region-enriched R5: 1.371/0.00268 |
PWP2 | 0.955 | - | - | - | 0.955 | - | - | Mlig455_006273 {REF} {Length: 3600} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=68.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=44.0]; Dip2/Utp12 Family [PF04003.14, score=25.8]} {Human: ENSG00000241945, PWP2, PWP2, small subunit processome component, [Score=109, Expect=1e-23]; ENSG00000275464, FP565260.1, periodic tryptophan protein 2 homolog, [Score=108, Expect=2e-23]} {Mouse: ENSMUSG00000032834, Pwp2, PWP2 periodic tryptophan protein homolog (yeast), [Score=102, Expect=1e-21]} {Dmel: FBgn0033557, CG12325, [Score=113, Expect=3e-25]} {Celegans: WBGene00018891, F55F8.3, Periodic tryptophan protein 2 homolog, [Score=80.9, Expect=3e-15]} {Smed: dd_Smed_v6_6675_0_1, dd_Smed_v6_6675_0_1, [Score=112, Expect=5e-25]} {RNA1509_5746} {RNA1310_3870} {RNA815_8657.1} |
| 9. | MligTC455_29339 | 176 | 3.67 | Mlig455_018221, Mlig455_036131 | Neo: Irradiation Age: Up-Down-Down |
CNBP | 0.951 | - | - | - | 0.951 | - | - | Mlig455_018221 {REF} {Length: 5982} {Pfam: Zinc knuckle [PF00098.25, score=25.6]} {RNA1509_21798} {RNA1310_927.1} {RNA815_827} Mlig455_036131 {REF} {Length: 4130} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.3]; Aspartyl protease [PF13650.8, score=23.3]; Zinc knuckle [PF00098.25, score=23.1]} {Human: ENSG00000169714, CNBP, CCHC-type zinc finger nucleic acid binding protein, [Score=50.1, Expect=2e-06]} {Mouse: ENSMUSG00000030057, Cnbp, cellular nucleic acid binding protein, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=112, Expect=1e-25]} {RNA1509_21798} {RNA1310_927.1} {RNA815_827} |
| 10. | MligTC455_36584 | 1177 | 24.51 | Mlig455_011533, Mlig455_049984 | Neo: - Age: - |
0.95 | - | - | - | - | - | 0.950 | Mlig455_011533 {REF} {Length: 1933} {TRANSSPLICED} {Pfam: SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=19.6]} {RNA1509_29499} {RNA1310_32403} {RNA815_16915.1} Mlig455_049984 {REF} {Length: 1918} {TRANSSPLICED} {Pfam: SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=20.3]} {RNA1509_29499, RNA1509_50788} {RNA1310_32403, RNA1509_50788} {RNA1509_50788, RNA815_16915.1} |
Berezikov Lab - 2020-2021 © ERIBA