Data search
Results for MligTC455_21069
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_21069 | 933 | 19.44 | Mlig455_002844 | Neo: - Age: Down-Up-Up |
LSG1 | Mlig455_002844 {REF} {Length: 2622} {Pfam: 50S ribosome-binding GTPase [PF01926.25, score=47.3]; RsgA GTPase [PF03193.18, score=23.2]} {Human: ENSG00000041802, LSG1, large 60S subunit nuclear export GTPase 1, [RH, Score=207, Expect=2e-58]} {Mouse: ENSMUSG00000022538, Lsg1, large 60S subunit nuclear export GTPase 1, [RH, Score=210, Expect=1e-59]} {Dmel: FBgn0266284, Ns3, Nucleostemin 3, [Score=335, Expect=2e-107]} {Celegans: WBGene00016907, C53H9.2, [RH, Score=302, Expect=2e-95]} {Smed: dd_Smed_v6_7698_0_1, dd_Smed_v6_7698_0_1, [RH, Score=184, Expect=2e-50]} {RNA1509_11368, RNA1509_13533} {RNA1310_10776.1, RNA1509_11368, RNA1509_13533} {RNA1509_11368, RNA1509_13533, RNA815_4120} |
Cumulative graph for MligTC455_21069
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.01 | 4.618 | 0.99250 | 1.00000 | |
| RegionR2 | -0.391 | 4.618 | 0.33807 | 0.72962 | |
| RegionR3 | -0.253 | 4.618 | 0.45443 | 0.96533 | |
| RegionR4 | 0.454 | 4.618 | 0.19284 | 0.46945 | |
| RegionR5 | 0.884 | 4.618 | 0.00129 | 0.01247 | |
| RegionR6 | 0.345 | 4.618 | 0.28564 | 0.87596 | |
| RegionR7 | -0.172 | 4.618 | 0.71085 | 1.00000 | |
| RegionR8 | -0.856 | 4.618 | 0.22033 | 0.82817 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -7.93 | 4.618 | 0.02859 | 0.61894 | |
| RegenerationR2 | 0.437 | 4.618 | 0.15706 | 0.59390 | |
| RegenerationR3 | 0.385 | 4.618 | 0.26026 | 0.69468 | |
| RegenerationR4 | 0.134 | 4.618 | 0.68149 | 0.94607 | |
| RegenerationR5 | 0.028 | 4.618 | 0.92420 | 1.00000 | |
| RegenerationR6 | 0.119 | 4.618 | 0.71965 | 0.93522 | |
| RegenerationBL | -0.323 | 4.618 | 0.52028 | 0.88212 | |
| RegenerationTP | 0.558 | 4.618 | 0.29131 | 0.73630 |
Genes with expression patterns similar to MligTC455_21069
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_21069 | 933 | 19.44 | Mlig455_002844 | Neo: - Age: Down-Up-Up |
LSG1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_002844 {REF} {Length: 2622} {Pfam: 50S ribosome-binding GTPase [PF01926.25, score=47.3]; RsgA GTPase [PF03193.18, score=23.2]} {Human: ENSG00000041802, LSG1, large 60S subunit nuclear export GTPase 1, [RH, Score=207, Expect=2e-58]} {Mouse: ENSMUSG00000022538, Lsg1, large 60S subunit nuclear export GTPase 1, [RH, Score=210, Expect=1e-59]} {Dmel: FBgn0266284, Ns3, Nucleostemin 3, [Score=335, Expect=2e-107]} {Celegans: WBGene00016907, C53H9.2, [RH, Score=302, Expect=2e-95]} {Smed: dd_Smed_v6_7698_0_1, dd_Smed_v6_7698_0_1, [RH, Score=184, Expect=2e-50]} {RNA1509_11368, RNA1509_13533} {RNA1310_10776.1, RNA1509_11368, RNA1509_13533} {RNA1509_11368, RNA1509_13533, RNA815_4120} |
| 2. | MligTC455_42795 | 694 | 14.47 | Mlig455_007126 | Neo: Irradiation Age: - Region-enriched R5: 1.805/0.00044 |
POLR3C | 3.283 | 0.782 | 0.724 | - | 0.811 | 0.966 | - | Mlig455_007126 {REF} {Length: 2156} {Pfam: RNA polymerase III subunit RPC82 [PF05645.15, score=24.7]; TFIIE alpha subunit [PF02002.19, score=19.0]} {Human: ENSG00000186141, POLR3C, RNA polymerase III subunit C, [RH, Score=180, Expect=8e-49]} {Mouse: ENSMUSG00000028099, Polr3c, polymerase (RNA) III (DNA directed) polypeptide C, [RH, Score=183, Expect=4e-50]} {Dmel: FBgn0038057, CG12267, [RH, Score=105, Expect=9e-24]} {RNA1509_8125} {RNA1310_9635.1, RNA1509_8125} {RNA1509_8125, RNA815_3590.1} |
| 3. | MligTC455_25452 | 649 | 13.52 | Mlig455_021520 | Neo: - Age: logFC(26M/2M)=0.444 Region-enriched R5: 1.068/0.03144 |
2.698 | 0.851 | - | - | 0.953 | - | 0.894 | Mlig455_021520 {REF} {Length: 2250} {TRANSSPLICED} {RNA1509_20029, RNA1509_46521} {RNA1310_11367, RNA1509_20029, RNA1509_46521} {RNA1509_20029, RNA1509_46521, RNA815_3706} | |
| 4. | MligTC455_38769 | 1242 | 25.88 | Mlig455_008566 | Neo: - |
NIT1 | 2.593 | 0.808 | - | - | 0.834 | 0.951 | - | Mlig455_008566 {REF} {Length: 2098} {TRANSSPLICED} {Pfam: Carbon-nitrogen hydrolase [PF00795.24, score=192.1]; HIT domain [PF01230.25, score=64.4]; Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000158793, NIT1, nitrilase 1, [RH, Score=259, Expect=5e-81]} {Mouse: ENSMUSG00000013997, Nit1, nitrilase 1, [RH, Score=267, Expect=2e-84]} {Dmel: FBgn0024945, NitFhit, Nitrilase and fragile histidine triad fusion protein, [RH, Score=313, Expect=4e-100]} {Celegans: WBGene00003594, nft-1, Nitrilase and fragile histidine triad fusion protein NitFhit Bis(5'-adenosyl)-triphosphatase Nitrilase homolog, [RH, Score=358, Expect=5e-118]} {Smed: dd_Smed_v6_2711_0_1, dd_Smed_v6_2711_0_1, [RH, Score=399, Expect=4e-134]} {RNA1509_19262} {RNA1310_18639.1} {RNA815_7752.1} |
| 5. | MligTC455_42479 | 921 | 19.18 | Mlig455_029963 | Neo: - Age: - Region-enriched R5: 1.129/0.00410 |
AGK | 2.588 | 0.752 | - | - | 0.886 | 0.950 | - | Mlig455_029963 {REF} {Length: 1557} {TRANSSPLICED} {Pfam: Diacylglycerol kinase catalytic domain [PF00781.26, score=50.8]} {Human: ENSG00000006530, AGK, acylglycerol kinase, [RH, Score=108, Expect=2e-26]} {Mouse: ENSMUSG00000029916, Agk, acylglycerol kinase, [RH, Score=106, Expect=2e-24]} {Dmel: FBgn0260750, Mulk, Multi-substrate lipid kinase, [RH, Score=86.3, Expect=6e-18]} {Celegans: WBGene00018674, F52C9.3, [RH, Score=68.2, Expect=4e-12]} {Smed: dd_Smed_v6_8572_0_1, dd_Smed_v6_8572_0_1, [RH, Score=114, Expect=1e-27]} {RNA1509_15562, RNA1509_19370} {RNA1310_20511, RNA1509_15562, RNA1509_19370} {RNA1509_15562, RNA1509_19370, RNA815_17466} |
| 6. | MligTC455_37939 | 647 | 13.48 | Mlig455_058807, Mlig455_058859 | Neo: - Age: Down-Up-Up Region-enriched R5: 1.206/0.04923 |
MGMT | 0.96 | - | - | - | 0.960 | - | - | Mlig455_058807 {REF} {Length: 1022} {TRANSSPLICED} {Pfam: 6-O-methylguanine DNA methyltransferase, DNA binding domain [PF01035.22, score=95.8]} {Human: ENSG00000170430, MGMT, O-6-methylguanine-DNA methyltransferase, [RH, Score=111, Expect=1e-29]} {Mouse: ENSMUSG00000054612, Mgmt, O-6-methylguanine-DNA methyltransferase, [RH, Score=110, Expect=1e-29]} {Celegans: WBGene00000093, agt-1, AlkylGuanine DNA alkylTransferase, [RH, Score=47.0, Expect=1e-06]} {RNA1509_40722} {RNA1310_29880} {RNA815_43356} Mlig455_058859 {REF} {Length: 1325} {TRANSSPLICED} {RNA1509_40722} {RNA1310_29880, RNA1509_40722} {RNA1509_40722, RNA815_43356} |
| 7. | MligTC455_22173 | 575 | 11.98 | Mlig455_048203 | Neo: Int S/G2/M Age: - |
CHTF18 | 0.953 | - | - | - | 0.953 | - | - | Mlig455_048203 {REF} {Length: 2559} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=35.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=23.9]} {Human: ENSG00000127586, CHTF18, chromosome transmission fidelity factor 18, [RH, Score=310, Expect=3e-92]} {Mouse: ENSMUSG00000019214, Chtf18, CTF18, chromosome transmission fidelity factor 18, [RH, Score=297, Expect=7e-88]} {Dmel: FBgn0015376, cutlet, [RH, Score=305, Expect=6e-91]} {Celegans: WBGene00010676, ctf-18, [RH, Score=207, Expect=1e-56]} {Smed: dd_Smed_v6_13246_0_1, dd_Smed_v6_13246_0_1, [RH, Score=277, Expect=3e-82]} {RNA1509_22604} {RNA1310_8860} {RNA815_51036} |
Berezikov Lab - 2020-2021 © ERIBA