M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21168

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21168 3643 75.89 Mlig455_026060

Neo: -

Age: Down-Up-Up

 RDX Mlig455_026060 {REF} {Length: 3030} {TRANSSPLICED} {Pfam: Ezrin/radixin/moesin family [PF00769.21, score=109.7]; FERM C-terminal PH-like domain [PF09380.12, score=87.7]; FERM central domain [PF00373.20, score=85.7]; FERM N-terminal domain [PF09379.12, score=67.8]} {Human: ENSG00000137710, RDX, radixin, [RH, Score=602, Expect=0.0]; ENSG00000092820, EZR, ezrin, [RH, Score=593, Expect=0.0]; ENSG00000147065, MSN, moesin, [RH, Score=585, Expect=0.0]} {Mouse: ENSMUSG00000032050, Rdx, radixin, [RH, Score=601, Expect=0.0]; ENSMUSG00000052397, Ezr, ezrin, [RH, Score=585, Expect=0.0]; ENSMUSG00000031207, Msn, moesin, [RH, Score=580, Expect=0.0]} {Dmel: FBgn0011661, Moe, Moesin, [RH, Score=583, Expect=0.0]} {Celegans: WBGene00001333, erm-1, ERM-1B; Ezrin/Radixin/Moesin, [RH, Score=588, Expect=0.0]} {Smed: dd_Smed_v6_8101_0_1, dd_Smed_v6_8101_0_1, [RH, Score=516, Expect=5e-179]} {RNA1509_10036, RNA1509_12465, RNA1509_18141, RNA1509_27085, RNA1509_47716, RNA1509_58121, RNA1509_5927, RNA1509_895} {RNA1310_6787, RNA1509_10036, RNA1509_12465, RNA1509_18141, RNA1509_27085, RNA1509_47716, RNA1509_58121, RNA1509_5927, RNA1509_895} {RNA1509_10036, RNA1509_12465, RNA1509_18141, RNA1509_27085, RNA1509_47716, RNA1509_58121, RNA1509_5927, RNA1509_895, RNA815_1582.1}

Cumulative graph for MligTC455_21168

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.409 6.335 0.37309 1.00000
RegionR2 -0.02 6.335 0.93226 1.00000
RegionR3 -0.076 6.335 0.69201 1.00000
RegionR4 -0.29 6.335 0.18369 0.45537
RegionR5 0.138 6.335 0.43053 0.79024
RegionR6 0.439 6.335 0.01840 0.24247
RegionR7 0.273 6.335 0.22371 0.84498
RegionR8 -0.056 6.335 0.84568 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.759 6.335 0.27911 0.97982
RegenerationR2 -0.069 6.335 0.74828 0.97285
RegenerationR3 -0.156 6.335 0.49381 0.85538
RegenerationR4 0.104 6.335 0.64898 0.93288
RegenerationR5 -0.216 6.335 0.31597 0.74049
RegenerationR6 -0.279 6.335 0.20893 0.55203
RegenerationBL -0.08 6.335 0.73910 1.00000
RegenerationTP 0.014 6.335 0.95675 1.00000


Genes with expression patterns similar to MligTC455_21168

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21168 3643 75.89 Mlig455_026060

Neo: -

Age: Down-Up-Up

 RDX 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_026060 {REF} {Length: 3030} {TRANSSPLICED} {Pfam: Ezrin/radixin/moesin family [PF00769.21, score=109.7]; FERM C-terminal PH-like domain [PF09380.12, score=87.7]; FERM central domain [PF00373.20, score=85.7]; FERM N-terminal domain [PF09379.12, score=67.8]} {Human: ENSG00000137710, RDX, radixin, [RH, Score=602, Expect=0.0]; ENSG00000092820, EZR, ezrin, [RH, Score=593, Expect=0.0]; ENSG00000147065, MSN, moesin, [RH, Score=585, Expect=0.0]} {Mouse: ENSMUSG00000032050, Rdx, radixin, [RH, Score=601, Expect=0.0]; ENSMUSG00000052397, Ezr, ezrin, [RH, Score=585, Expect=0.0]; ENSMUSG00000031207, Msn, moesin, [RH, Score=580, Expect=0.0]} {Dmel: FBgn0011661, Moe, Moesin, [RH, Score=583, Expect=0.0]} {Celegans: WBGene00001333, erm-1, ERM-1B; Ezrin/Radixin/Moesin, [RH, Score=588, Expect=0.0]} {Smed: dd_Smed_v6_8101_0_1, dd_Smed_v6_8101_0_1, [RH, Score=516, Expect=5e-179]} {RNA1509_10036, RNA1509_12465, RNA1509_18141, RNA1509_27085, RNA1509_47716, RNA1509_58121, RNA1509_5927, RNA1509_895} {RNA1310_6787, RNA1509_10036, RNA1509_12465, RNA1509_18141, RNA1509_27085, RNA1509_47716, RNA1509_58121, RNA1509_5927, RNA1509_895} {RNA1509_10036, RNA1509_12465, RNA1509_18141, RNA1509_27085, RNA1509_47716, RNA1509_58121, RNA1509_5927, RNA1509_895, RNA815_1582.1}
2. MligTC455_46653 678 14.12 Mlig455_039570

Neo: -

Age: logFC(26M/2M)=0.275

 EPS8L2 0.957 - - - - - 0.957 Mlig455_039570 {REF} {Length: 3659} {TRANSSPLICED} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=42.2]; SH3 domain [PF00018.30, score=24.0]} {Human: ENSG00000177106, EPS8L2, EPS8 like 2, [RH, Score=158, Expect=5e-40]; ENSG00000151491, EPS8, epidermal growth factor receptor pathway substrate 8, [RH, Score=152, Expect=7e-38]} {Mouse: ENSMUSG00000015766, Eps8, epidermal growth factor receptor pathway substrate 8, [RH, Score=158, Expect=8e-40]; ENSMUSG00000025504, Eps8l2, EPS8-like 2, [RH, Score=154, Expect=1e-38]} {Dmel: FBgn0029095, aru, arouser, [Score=161, Expect=5e-41]} {Celegans: WBGene00001330, eps-8, EPS (Human endocytosis) related; Epidermal growth factor receptor pathway substrate 8 splice variant A, [RH, Score=213, Expect=6e-59]} {Smed: dd_Smed_v6_4256_0_1, dd_Smed_v6_4256_0_1, [RH, Score=79.3, Expect=3e-15]} {RNA1509_4398} {RNA1310_3514} {RNA815_6294}
3. MligTC455_34500 3224 67.16 Mlig455_029770, Mlig455_029924

Neo: -

Age: logFC(26M/2M)=0.194

 NPLOC4 0.956 - - - 0.956 - -

Mlig455_029770 {REF} {Length: 3121} {TRANSSPLICED} {Pfam: NPL4 family [PF05021.17, score=297.1]; NPL4 family, putative zinc binding region [PF05020.17, score=135.9]; Nuclear pore localisation protein NPL4 [PF11543.10, score=42.7]} {Human: ENSG00000182446, NPLOC4, NPL4 homolog, ubiquitin recognition factor, [RH, Score=431, Expect=9e-144]} {Mouse: ENSMUSG00000039703, Nploc4, NPL4 homolog, ubiquitin recognition factor, [RH, Score=434, Expect=2e-145]} {Dmel: FBgn0039348, Npl4, Nuclear protein localization 4, [RH, Score=398, Expect=3e-131]} {Celegans: WBGene00019121, npl-4.2, NPL (Yeast Nuclear Protein Localization) homolog, [RH, Score=359, Expect=1e-117]} {Smed: dd_Smed_v6_5277_0_1, dd_Smed_v6_5277_0_1, [RH, Score=421, Expect=3e-140]} {RNA1509_24296, RNA1509_30091, RNA1509_32827, RNA1509_6797} {RNA1310_13992, RNA1509_24296, RNA1509_30091, RNA1509_32827} {RNA1509_24296, RNA1509_30091, RNA1509_32827, RNA815_5567}

Mlig455_029924 {REF} {Length: 3589} {TRANSSPLICED} {Pfam: NPL4 family [PF05021.17, score=298.1]; NPL4 family, putative zinc binding region [PF05020.17, score=135.9]; Nuclear pore localisation protein NPL4 [PF11543.10, score=41.7]} {Human: ENSG00000182446, NPLOC4, NPL4 homolog, ubiquitin recognition factor, [RH, Score=433, Expect=1e-144]} {Mouse: ENSMUSG00000039703, Nploc4, NPL4 homolog, ubiquitin recognition factor, [RH, Score=438, Expect=9e-147]} {Dmel: FBgn0039348, Npl4, Nuclear protein localization 4, [RH, Score=402, Expect=9e-133]} {Celegans: WBGene00019121, npl-4.2, NPL (Yeast Nuclear Protein Localization) homolog, [RH, Score=361, Expect=4e-118]} {Smed: dd_Smed_v6_5277_0_1, dd_Smed_v6_5277_0_1, [RH, Score=427, Expect=2e-142]} {RNA1509_6797} {RNA1310_13992} {RNA815_5567}
4. MligTC455_40745 906 18.88 Mlig455_047848, Mlig455_047918

Neo: -

Age: Up-Down-Down

 TTPAL 0.95 - - - - - 0.950

Mlig455_047848 {REF} {Length: 4283} {TRANSSPLICED} {Pfam: CRAL/TRIO domain [PF00650.22, score=77.6]; CRAL/TRIO, N-terminal domain [PF03765.17, score=22.8]} {Human: ENSG00000124120, TTPAL, alpha tocopherol transfer protein like, [RH, Score=135, Expect=2e-36]} {Mouse: ENSMUSG00000017679, Ttpal, tocopherol (alpha) transfer protein-like, [RH, Score=139, Expect=4e-38]; ENSMUSG00000039194, Rlbp1, retinaldehyde binding protein 1, [RH, Score=133, Expect=9e-36]} {Dmel: FBgn0036289, CG10657, [Score=125, Expect=4e-33]} {RNA1509_23560} {RNA1310_23879} {RNA815_11361}

Mlig455_047918 {REF} {Length: 4039} {TRANSSPLICED} {Pfam: CRAL/TRIO domain [PF00650.22, score=77.6]; CRAL/TRIO, N-terminal domain [PF03765.17, score=22.8]} {Human: ENSG00000124120, TTPAL, alpha tocopherol transfer protein like, [RH, Score=135, Expect=2e-36]} {Mouse: ENSMUSG00000017679, Ttpal, tocopherol (alpha) transfer protein-like, [RH, Score=139, Expect=4e-38]; ENSMUSG00000039194, Rlbp1, retinaldehyde binding protein 1, [RH, Score=133, Expect=9e-36]} {Dmel: FBgn0036289, CG10657, [Score=125, Expect=4e-33]} {RNA1509_23560} {RNA1310_23879, RNA1509_23560} {RNA1509_23560, RNA815_11361}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA