M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21246

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21246 58 1.21 Mlig455_023143, Mlig455_023298

Neo: -

Age: Down-Up-Down

Mlig455_023143 {REF} {Length: 3802} {Pfam: SAP domain [PF02037.29, score=30.6]; Phage integrase family [PF00589.24, score=28.3]} {RNA1509_29350} {RNA1310_3424.1} {RNA815_6756.1}

Mlig455_023298 {REF} {Length: 3744} {Pfam: SAP domain [PF02037.29, score=30.6]; Phage integrase family [PF00589.24, score=28.3]} {RNA1509_29350} {RNA1310_3424.1} {RNA815_6756.1}

Cumulative graph for MligTC455_21246

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.618 1.568 1.00000 1.00000
RegionR2 2.527 1.568 0.44115 0.83029
RegionR3 1.932 1.568 0.48635 0.98594
RegionR4 2.225 1.568 0.56551 0.88468
RegionR5 1.972 1.568 0.43571 0.79586
RegionR6 1.477 1.568 0.57998 1.00000
RegionR7 -3.463 1.568 0.99947 1.00000
RegionR8 -3.053 1.568 0.99928 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.02 1.568 0.99924 1.00000
RegenerationR2 -3.287 1.568 0.39698 0.81315
RegenerationR3 -1.645 1.568 0.85243 0.99908
RegenerationR4 -1.073 1.568 0.99624 1.00000
RegenerationR5 -1.915 1.568 0.67739 0.94359
RegenerationR6 -0.716 1.568 0.97465 1.00000
RegenerationBL -2.604 1.568 0.99941 1.00000
RegenerationTP -0.864 1.568 0.99952 1.00000


Genes with expression patterns similar to MligTC455_21246

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21246 58 1.21 Mlig455_023143, Mlig455_023298

Neo: -

Age: Down-Up-Down

 5 - 1.000 1.000 1.000 1.000 1.000

Mlig455_023143 {REF} {Length: 3802} {Pfam: SAP domain [PF02037.29, score=30.6]; Phage integrase family [PF00589.24, score=28.3]} {RNA1509_29350} {RNA1310_3424.1} {RNA815_6756.1}

Mlig455_023298 {REF} {Length: 3744} {Pfam: SAP domain [PF02037.29, score=30.6]; Phage integrase family [PF00589.24, score=28.3]} {RNA1509_29350} {RNA1310_3424.1} {RNA815_6756.1}
2. MligTC455_33185 30 0.63 Mlig455_051887

Neo: -

Age: Down-Up-Down

 0.981 - - - - - 0.981 Mlig455_051887 {REF} {Length: 1288} {RNA1509_39807} {RNA1310_34787.2} {RNA815_21936}
3. MligTC455_24855 72 1.5 Mlig455_044777, Mlig455_053676

Neo: -

Age: -

 0.975 - - - 0.975 - -

Mlig455_044777 {REF} {Length: 1840} {NoTransDecoderORF} {RNA1509_47921} {RNA1310_90646} {RNA815_8730.1}

Mlig455_053676 {REF} {Length: 1840} {NoTransDecoderORF} {RNA1509_47921} {RNA1310_90646} {RNA815_8730.1}
4. MligTC455_19382 51 1.07 Mlig455_032372

Neo: -

Age: -

Region-enriched R2: 7.387/0.00125

 GABBR2 0.973 - - - - 0.973 - Mlig455_032372 {REF} {Length: 3616} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=166.5]; Receptor family ligand binding region [PF01094.30, score=93.5]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=323, Expect=4e-95]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=322, Expect=7e-95]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=352, Expect=3e-104]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=317, Expect=3e-94]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=159, Expect=1e-44]} {RNA1509_48457} {RNA1310_28999} {RNA815_30452}
5. MligTC455_33345 73 1.53 Mlig455_022775

Neo: -

Age: Up-Down-Down

 ITPR2 0.972 - - - - 0.972 - Mlig455_022775 {REF} {Length: 10477} {Pfam: RIH domain [PF01365.23, score=93.1]; RyR and IP3R Homology associated [PF08454.13, score=68.6]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=68.1]; MIR domain [PF02815.21, score=57.0]} {Human: ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=204, Expect=1e-51]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=206, Expect=3e-52]; ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=199, Expect=3e-50]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=157, Expect=1e-37]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=146, Expect=2e-34]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [RH, Score=3019, Expect=0.0]} {RNA1509_31887} {RNA1310_193.1} {RNA815_9899}
6. MligTC455_53736 172 3.58 Mlig455_044912, Mlig455_055537

Neo: -

Age: Up-Up-Down

Region-enriched R3: 2.469/0.01877

 0.969 - - - - 0.969 -

Mlig455_044912 {REF} {Length: 1314} {Pfam: Septum formation initiator [PF04977.17, score=18.3]} {RNA1509_55611} {RNA1310_30107.1, RNA1509_55611} {RNA1509_55611, RNA815_17895}

Mlig455_055537 {REF} {Length: 1336} {Pfam: Septum formation initiator [PF04977.17, score=18.3]} {RNA1509_55611} {RNA1310_30107.1} {RNA815_17895}
7. MligTC455_46635 149 3.1 Mlig455_035075

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.518

 ADAM12 0.966 - - - 0.966 - - Mlig455_035075 {REF} {Length: 3055} {Pfam: Reprolysin (M12B) family zinc metalloprotease [PF01421.21, score=147.1]; Disintegrin [PF00200.25, score=68.9]; Metallo-peptidase family M12 [PF13688.8, score=64.4]; Metallo-peptidase family M12B Reprolysin-like [PF13582.8, score=53.9]; Metallo-peptidase family M12B Reprolysin-like [PF13574.8, score=48.1]; Metallo-peptidase family M12B Reprolysin-like [PF13583.8, score=42.9]; ADAM cysteine-rich [PF08516.14, score=37.7]} {Human: ENSG00000148848, ADAM12, ADAM metallopeptidase domain 12, [Score=247, Expect=1e-68]; ENSG00000168615, ADAM9, ADAM metallopeptidase domain 9, [Score=241, Expect=3e-67]; ENSG00000135074, ADAM19, ADAM metallopeptidase domain 19, [Score=240, Expect=3e-66]} {Mouse: ENSMUSG00000031555, Adam9, a disintegrin and metallopeptidase domain 9 (meltrin gamma), [Score=241, Expect=3e-67]; ENSMUSG00000025473, Adam8, a disintegrin and metallopeptidase domain 8, [Score=240, Expect=1e-67]; ENSMUSG00000054555, Adam12, a disintegrin and metallopeptidase domain 12 (meltrin alpha), [Score=238, Expect=1e-65]; ENSMUSG00000014725, Adam28, a disintegrin and metallopeptidase domain 28, [Score=232, Expect=2e-64]} {Dmel: FBgn0265140, Meltrin, [Score=248, Expect=3e-69]} {Celegans: WBGene00000074, adm-2, ADAM (Disintegrin plus metalloprotease) family, [RH, Score=255, Expect=1e-71]} {Smed: dd_Smed_v6_5143_0_1, dd_Smed_v6_5143_0_1, [Score=206, Expect=5e-55]} {RNA1509_16389} {RNA1310_5826, RNA1509_16389} {RNA1509_16389, RNA815_9362}
8. MligTC455_50328 128 2.66 Mlig455_039843

Neo: -

Age: -

 SCNN1B 0.966 - - - - 0.966 - Mlig455_039843 {REF} {Length: 2793} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=206.6]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=69.3, Expect=1e-11]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=58.9, Expect=1e-08]; ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=57.4, Expect=4e-08]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=75.5, Expect=8e-14]} {Smed: dd_Smed_v6_23028_0_1, dd_Smed_v6_23028_0_1, [RH, Score=366, Expect=3e-118]} {RNA1509_37054} {RNA1310_10450, RNA1509_37054} {RNA1509_37054, RNA815_17111}
9. MligTC455_52632 96 2 Mlig455_005834

Neo: -

Age: Down-Up-Down

Region-enriched R4: 2.992/0.04195

 0.965 - - - - - 0.965 Mlig455_005834 {REF} {Length: 1504} {Pfam: Syntaxin 6, N-terminal [PF09177.13, score=47.2]} {RNA1509_51182} {RNA1310_21442.2} {RNA815_8498.1}
10. MligTC455_18917 66 1.37 Mlig455_039555, Mlig455_051360

Neo: -

Age: -

 0.963 - - - 0.963 - -

Mlig455_039555 {REF} {Length: 396} {RNA1310_56672} {RNA815_59682}

Mlig455_051360 {REF} {Length: 384} {RNA1310_56672} {RNA815_59682}
11. MligTC455_52036 13 0.27 Mlig455_068246, Mlig455_068266

Neo: -

Age: -

 0.963 - - - - 0.963 -

Mlig455_068246 {REF} {Length: 593} {NoTransDecoderORF} {RNA1509_46135} {RNA1310_32009.2}

Mlig455_068266 {REF} {Length: 787} {NoTransDecoderORF} {RNA1509_46135} {RNA1310_32009.2}
12. MligTC455_44378 62 1.3 Mlig455_030967

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-2.513

 0.962 - - - - - 0.962 Mlig455_030967 {REF} {Length: 857} {NoTransDecoderORF} {RNA1509_25418} {RNA1310_41423} {RNA815_20318.1}
13. MligTC455_07538 14 0.28 Mlig455_042378

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_042378 {REF} {Length: 2025} {RNA1509_35668} {RNA1310_23997.1} {RNA815_18824.1}
14. MligTC455_01844 19 0.39 Mlig455_018022

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_018022 {REF} {Length: 633} {Pfam: Protein of unknown function (DUF445) [PF04286.14, score=28.6]; EcsC protein family [PF12787.9, score=22.1]; Spore germination protein GerPC [PF10737.11, score=21.1]; Protein export membrane protein [PF02355.18, score=19.8]} {Mouse: ENSMUSG00000046056, Sbsn, suprabasin, [Score=53.1, Expect=4e-08]} {RNA1509_60122} {RNA1310_51739} {RNA815_33980}
15. MligTC455_37203 15 0.3 Mlig455_016211

Neo: -

Age: -

 TRAF2 0.957 - - - - 0.957 - Mlig455_016211 {REF} {Length: 3900} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=30.7]} {Human: ENSG00000127191, TRAF2, TNF receptor associated factor 2, [Score=58.5, Expect=6e-09]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=59.3, Expect=3e-09]} {Smed: dd_Smed_v6_17551_0_2, dd_Smed_v6_17551_0_2, [Score=50.8, Expect=5e-07]} {RNA1509_7329} {RNA1310_29315} {RNA815_5375}
16. MligTC455_29620 214 4.45 Mlig455_046746, Mlig455_046767, Mlig455_069972

Neo: -

Age: Up-Down-Up

 EPHA1, KSR1 0.956 - - - - 0.956 -

Mlig455_046746 {REF} {Length: 3906} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=110.5]; Protein kinase domain [PF00069.27, score=65.0]; Kinase-like [PF14531.8, score=20.1]} {Human: ENSG00000141068, KSR1, kinase suppressor of ras 1, [Score=126, Expect=3e-29]; ENSG00000171435, KSR2, kinase suppressor of ras 2, [Score=124, Expect=1e-28]} {Mouse: ENSMUSG00000018334, Ksr1, kinase suppressor of ras 1, [Score=130, Expect=1e-30]; ENSMUSG00000061578, Ksr2, kinase suppressor of ras 2, [Score=124, Expect=1e-28]} {Dmel: FBgn0015402, ksr, kinase suppressor of ras, [Score=151, Expect=2e-37]} {Celegans: WBGene00002239, ksr-1, Kinase suppressor of Ras A, [Score=129, Expect=1e-30]} {Smed: dd_Smed_v6_8845_0_1, dd_Smed_v6_8845_0_1, [RH, Score=331, Expect=1e-102]} {RNA1509_38394} {RNA1310_3636} {RNA815_15015.1}

Mlig455_046767 {REF} {Length: 3979} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=110.5]; Protein kinase domain [PF00069.27, score=65.0]; Kinase-like [PF14531.8, score=20.1]} {Human: ENSG00000141068, KSR1, kinase suppressor of ras 1, [Score=125, Expect=4e-29]; ENSG00000171435, KSR2, kinase suppressor of ras 2, [Score=124, Expect=1e-28]} {Mouse: ENSMUSG00000018334, Ksr1, kinase suppressor of ras 1, [Score=130, Expect=1e-30]; ENSMUSG00000061578, Ksr2, kinase suppressor of ras 2, [Score=124, Expect=1e-28]} {Dmel: FBgn0015402, ksr, kinase suppressor of ras, [Score=152, Expect=2e-37]} {Celegans: WBGene00002239, ksr-1, Kinase suppressor of Ras A, [Score=129, Expect=1e-30]} {Smed: dd_Smed_v6_8845_0_1, dd_Smed_v6_8845_0_1, [RH, Score=329, Expect=5e-102]} {RNA1509_38394} {RNA1310_3636} {RNA815_15015.1}

Mlig455_069972 {REF} {Length: 1901} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=60.7]; Protein kinase domain [PF00069.27, score=33.2]} {Human: ENSG00000146904, EPHA1, EPH receptor A1, [Score=50.8, Expect=1e-07]; ENSG00000284816, EPHA1, EPH receptor A1, [Score=50.8, Expect=1e-07]; ENSG00000120899, PTK2B, protein tyrosine kinase 2 beta, [Score=50.1, Expect=3e-07]; ENSG00000047936, ROS1, ROS proto-oncogene 1, receptor tyrosine kinase, [Score=48.9, Expect=7e-07]; ENSG00000140443, IGF1R, insulin like growth factor 1 receptor, [Score=48.5, Expect=1e-06]} {Mouse: ENSMUSG00000029859, Epha1, Eph receptor A1, [Score=51.6, Expect=5e-08]; ENSMUSG00000003534, Ddr1, discoidin domain receptor family, member 1, [Score=50.8, Expect=1e-07]; ENSMUSG00000014361, Mertk, c-mer proto-oncogene tyrosine kinase, [Score=50.8, Expect=1e-07]; ENSMUSG00000028876, Epha10, Eph receptor A10, [Score=49.7, Expect=2e-07]; ENSMUSG00000059456, Ptk2b, PTK2 protein tyrosine kinase 2 beta, [Score=49.3, Expect=3e-07]} {Dmel: FBgn0003366, sev, sevenless, [Score=52.8, Expect=2e-08]} {Celegans: WBGene00002239, ksr-1, Kinase suppressor of Ras A, [Score=53.5, Expect=6e-09]} {Smed: dd_Smed_v6_8845_0_1, dd_Smed_v6_8845_0_1, [Score=125, Expect=5e-34]} {RNA1509_38394} {RNA1310_34788} {RNA815_31369}
17. MligTC455_02658 23 0.48 Mlig455_044399, Mlig455_044436

Neo: -

Age: -

Region-enriched R4: 2.992/0.01385

 0.955 - - - - 0.955 -

Mlig455_044399 {REF} {Length: 1127} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_67960}

Mlig455_044436 {REF} {Length: 429} {NoTransDecoderORF} {RNA1310_103288}
18. MligTC455_50838 30 0.62 Mlig455_016194

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_016194 {REF} {Length: 1629} {RNA1310_89913} {RNA815_62205}
19. MligTC455_08120 17 0.36 Mlig455_007635

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_007635 {REF} {Length: 1872} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=50.0]} {RNA1310_11435} {RNA815_31865}
20. MligTC455_12674 5 0.1 Mlig455_008612

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_008612 {REF} {Length: 1724} {NoTransDecoderORF} {RNA1310_73363} {RNA815_43965}
21. MligTC455_33304 14 0.3 Mlig455_031937

Neo: Irradiation

Age: Up-Down-Down

 SVEP1 0.952 - - - - 0.952 - Mlig455_031937 {REF} {Length: 9886} {Pfam: Sushi repeat (SCR repeat) [PF00084.22, score=132.0]; WSC domain [PF01822.21, score=27.9]; Polyphosphate kinase C-terminal domain 1 [PF17941.3, score=20.0]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=73.9, Expect=5e-12]} {Mouse: ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=77.0, Expect=3e-13]} {RNA1509_52468} {RNA1310_25459.1} {RNA815_495.1}
22. MligTC455_22668 41 0.86 Mlig455_034247, Mlig455_067284

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_034247 {REF} {Length: 2159} {RNA1509_55358} {RNA1310_19226} {RNA815_1882}

Mlig455_067284 {REF} {Length: 3374} {RNA1509_55358} {RNA1310_19226} {RNA815_1882}
23. MligTC455_09674 172 3.58 Mlig455_003939, Mlig455_003955

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_003939 {REF} {Length: 1666} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=51.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=30.9]} {RNA1310_24279} {RNA815_34991}

Mlig455_003955 {REF} {Length: 1792} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=51.1]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=30.9]} {RNA1310_24279} {RNA815_34991}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA