Data search


search
Exact
Search

Results for MligTC455_21318

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21318 344 7.16 Mlig455_015064

Neo: -

Age: -

CORO1B Mlig455_015064 {REF} {Length: 2240} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF1899) [PF08953.13, score=110.7]; Type of WD40 repeat [PF16300.7, score=70.7]; WD domain, G-beta repeat [PF00400.34, score=24.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=20.7]} {Human: ENSG00000172725, CORO1B, coronin 1B, [RH, Score=495, Expect=7e-171]; ENSG00000167549, CORO6, coronin 6, [RH, Score=489, Expect=1e-168]; ENSG00000110880, CORO1C, coronin 1C, [RH, Score=476, Expect=1e-163]} {Mouse: ENSMUSG00000097771, Coro1b, coronin, actin binding protein 1B, [RH, Score=496, Expect=2e-171]; ENSMUSG00000024835, Coro1b, coronin, actin binding protein 1B, [RH, Score=496, Expect=2e-171]; ENSMUSG00000020836, Coro6, coronin 6, [RH, Score=483, Expect=2e-166]; ENSMUSG00000004530, Coro1c, coronin, actin binding protein 1C, [RH, Score=475, Expect=2e-163]} {Dmel: FBgn0265935, coro, [RH, Score=484, Expect=4e-166]} {Celegans: WBGene00000768, cor-1, Coronin-like protein cor-1, [RH, Score=421, Expect=7e-142]} {Smed: dd_Smed_v6_448_0_1, dd_Smed_v6_448_0_1, [RH, Score=527, Expect=0.0]} {RNA1509_12118, RNA1509_13178} {RNA1310_15704, RNA1509_12118, RNA1509_13178} {RNA1509_12118, RNA1509_13178, RNA815_5917}

Cumulative graph for MligTC455_21318

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.884 3.349 0.62709 1.00000
RegionR2 1.258 3.349 0.23452 0.60792
RegionR3 -0.939 3.349 0.36516 0.89954
RegionR4 -1.459 3.349 0.19417 0.47171
RegionR5 0.702 3.349 0.35921 0.71080
RegionR6 0.777 3.349 0.37292 0.95364
RegionR7 -0.38 3.349 0.76240 1.00000
RegionR8 -0.843 3.349 0.62673 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.512 3.349 0.61577 1.00000
RegenerationR2 1.957 3.349 0.06132 0.40655
RegenerationR3 3.077 3.349 0.01025 0.18574
RegenerationR4 2.281 3.349 0.06221 0.39925
RegenerationR5 0.306 3.349 0.76691 0.97807
RegenerationR6 1.843 3.349 0.09170 0.37664
RegenerationBL 1.709 3.349 0.14508 0.45429
RegenerationTP 2.543 3.349 0.05465 0.38113


Genes with expression patterns similar to MligTC455_21318

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21318 344 7.16 Mlig455_015064

Neo: -

Age: -

CORO1B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_015064 {REF} {Length: 2240} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF1899) [PF08953.13, score=110.7]; Type of WD40 repeat [PF16300.7, score=70.7]; WD domain, G-beta repeat [PF00400.34, score=24.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=20.7]} {Human: ENSG00000172725, CORO1B, coronin 1B, [RH, Score=495, Expect=7e-171]; ENSG00000167549, CORO6, coronin 6, [RH, Score=489, Expect=1e-168]; ENSG00000110880, CORO1C, coronin 1C, [RH, Score=476, Expect=1e-163]} {Mouse: ENSMUSG00000097771, Coro1b, coronin, actin binding protein 1B, [RH, Score=496, Expect=2e-171]; ENSMUSG00000024835, Coro1b, coronin, actin binding protein 1B, [RH, Score=496, Expect=2e-171]; ENSMUSG00000020836, Coro6, coronin 6, [RH, Score=483, Expect=2e-166]; ENSMUSG00000004530, Coro1c, coronin, actin binding protein 1C, [RH, Score=475, Expect=2e-163]} {Dmel: FBgn0265935, coro, [RH, Score=484, Expect=4e-166]} {Celegans: WBGene00000768, cor-1, Coronin-like protein cor-1, [RH, Score=421, Expect=7e-142]} {Smed: dd_Smed_v6_448_0_1, dd_Smed_v6_448_0_1, [RH, Score=527, Expect=0.0]} {RNA1509_12118, RNA1509_13178} {RNA1310_15704, RNA1509_12118, RNA1509_13178} {RNA1509_12118, RNA1509_13178, RNA815_5917}
2. MligTC455_19549 144 3 Mlig455_048264

Neo: -

Age: -

0.96 - - 0.960 - - - Mlig455_048264 {REF} {Length: 859} {TRANSSPLICED} {RNA1509_49641} {RNA1310_3196} {RNA815_55823}
3. MligTC455_25867 56 1.17 Mlig455_003076

Neo: -

Age: -

Region-enriched R5: 2.808/0.04122

FBXO4 0.958 - - 0.958 - - - Mlig455_003076 {REF} {Length: 2441} {Pfam: F-box-like [PF12937.9, score=51.0]; F-box domain [PF00646.35, score=37.9]} {Human: ENSG00000151876, FBXO4, F-box protein 4, [RH, Score=124, Expect=2e-31]} {Mouse: ENSMUSG00000022184, Fbxo4, F-box protein 4, [RH, Score=126, Expect=2e-32]} {Smed: dd_Smed_v6_5616_0_1, dd_Smed_v6_5616_0_1, [RH, Score=135, Expect=2e-36]} {RNA1509_39963} {RNA1310_16512} {RNA815_5224}
4. MligTC455_00647 76 1.58 Mlig455_032515

Neo: -

Age: -

0.956 - - - 0.956 - - Mlig455_032515 {REF} {Length: 35} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_52118}
5. MligTC455_32752 991 20.65 Mlig455_048936, Mlig455_048957

Neo: -

Age: -

AGAP3 0.956 - - - - - 0.956

Mlig455_048936 {REF} {Length: 2649} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=114.5]; PH domain [PF00169.31, score=21.9]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=250, Expect=3e-73]} {Mouse: ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=242, Expect=3e-72]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=181, Expect=7e-48]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=146, Expect=3e-36]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=248, Expect=4e-70]} {RNA1509_54301} {RNA1310_18299} {RNA815_29402}

Mlig455_048957 {REF} {Length: 11921} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=114.5]; PH domain [PF00169.31, score=21.9]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=249, Expect=3e-73]} {Mouse: ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=243, Expect=3e-72]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=181, Expect=8e-48]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=145, Expect=2e-36]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=248, Expect=3e-70]} {RNA1509_54301} {RNA1310_18299} {RNA815_29402}
6. MligTC455_24513 125 2.6 Mlig455_051236, Mlig455_055235

Neo: -

Age: -

0.952 - - - - - 0.952

Mlig455_051236 {REF} {Length: 1426} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=28.1]} {RNA1509_32433} {RNA1310_27054.1} {RNA815_12624.1}

Mlig455_055235 {REF} {Length: 1542} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_32433} {RNA1310_19716} {RNA815_13109}
7. MligTC455_36066 190 3.96 Mlig455_055150

Neo: -

Age: -

0.952 - - - 0.952 - - Mlig455_055150 {REF} {Length: 4368} {TRANSSPLICED} {RNA1509_38168} {RNA1310_732.1, RNA1509_38168} {RNA1509_38168, RNA815_9144}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA