TomoSeq data search

Data search

Results for MligTC455_21320

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_21320

3221

67.11

Mlig455_005881, Mlig455_028657, Mlig455_028667

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.234

Mlig455_005881 {REF} {Length: 1281} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.2]} {RNA1509_29559, RNA1509_50493, RNA1509_53534} {RNA1310_29096, RNA1509_29559, RNA1509_50493, RNA1509_53534} {RNA1509_29559, RNA1509_50493, RNA1509_53534, RNA815_12156.1}

Mlig455_028657 {REF} {Length: 1282} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.3]} {RNA1509_50493} {RNA1310_29096} {RNA815_12156.1}

Mlig455_028667 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.2]; Phytanoyl-CoA dioxygenase (PhyH) [PF05721.15, score=19.0]} {RNA1509_53534} {RNA1310_29096} {RNA815_12156.1}

Cumulative graph for MligTC455_21320

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.717	6.153	0.00038	0.06512
RegionR2	0.82	6.153	0.06008	0.29517
RegionR3	0.366	6.153	0.33057	0.86838
RegionR4	0.977	6.153	0.02070	0.10455
RegionR5	0.883	6.153	0.01140	0.06349
RegionR6	0.873	6.153	0.01547	0.21800
RegionR7	0.539	6.153	0.18077	0.77820
RegionR8	-0.74	6.153	0.17418	0.75221

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	3.136	6.153	0.01265	0.48006
RegenerationR2	0.326	6.153	0.39845	0.81398
RegenerationR3	0.62	6.153	0.13705	0.56244
RegenerationR4	0.188	6.153	0.66034	0.93822
RegenerationR5	0.128	6.153	0.74695	0.97084
RegenerationR6	0.041	6.153	0.92246	1.00000
RegenerationBL	0.773	6.153	0.04589	0.24528
RegenerationTP	1.512	6.153	0.00039	0.02715

Genes with expression patterns similar to MligTC455_21320

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_21320	3221	67.11	Mlig455_005881, Mlig455_028657, Mlig455_028667	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.234		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_005881 {REF} {Length: 1281} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.2]} {RNA1509_29559, RNA1509_50493, RNA1509_53534} {RNA1310_29096, RNA1509_29559, RNA1509_50493, RNA1509_53534} {RNA1509_29559, RNA1509_50493, RNA1509_53534, RNA815_12156.1} Mlig455_028657 {REF} {Length: 1282} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.3]} {RNA1509_50493} {RNA1310_29096} {RNA815_12156.1} Mlig455_028667 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.2]; Phytanoyl-CoA dioxygenase (PhyH) [PF05721.15, score=19.0]} {RNA1509_53534} {RNA1310_29096} {RNA815_12156.1}
2.	MligTC455_45212	287	5.97	Mlig455_023937	Neo: - Age: -	TFAP4	1.69	0.732	-	-	-	-	0.958	Mlig455_023937 {REF} {Length: 2526} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=67.6]} {Human: ENSG00000090447, TFAP4, transcription factor AP-4, [RH, Score=90.5, Expect=1e-19]} {Mouse: ENSMUSG00000005718, Tfap4, transcription factor AP4, [RH, Score=90.9, Expect=6e-20]} {Dmel: FBgn0001994, crp, cropped, [RH, Score=92.8, Expect=3e-20]} {Celegans: WBGene00001955, hlh-11, Helix-loop-helix protein 11, [RH, Score=83.2, Expect=3e-17]} {Smed: dd_Smed_v6_8205_0_1, dd_Smed_v6_8205_0_1, [RH, Score=90.9, Expect=2e-20]} {RNA1509_12849, RNA1509_21993} {RNA1310_9423.1, RNA1509_21993} {RNA1509_21993, RNA815_7350.2}
3.	MligTC455_27426	396	8.26	Mlig455_047228	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.225	CTDSP1	0.964	-	-	-	-	-	0.964	Mlig455_047228 {REF} {Length: 3727} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=152.1]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=233, Expect=1e-73]; ENSG00000144677, CTDSPL, CTD small phosphatase like, [RH, Score=229, Expect=1e-71]; ENSG00000175215, CTDSP2, CTD small phosphatase 2, [RH, Score=224, Expect=1e-69]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=233, Expect=1e-73]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=230, Expect=2e-72]; ENSMUSG00000078429, Ctdsp2, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, [RH, Score=226, Expect=1e-70]} {Dmel: FBgn0036556, CG5830, [RH, Score=224, Expect=3e-69]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=224, Expect=2e-67]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=247, Expect=5e-74]} {RNA1509_44735} {RNA1310_14347} {RNA815_5621.1}
4.	MligTC455_46580	2253	46.95	Mlig455_020477	Neo: - Age: Down-Down-Up		0.957	-	-	-	-	-	0.957	Mlig455_020477 {REF} {Length: 1109} {TRANSSPLICED} {Pfam: CD20-like family [PF04103.17, score=27.3]} {Mouse: ENSMUSG00000024678, Ms4a4d, membrane-spanning 4-domains, subfamily A, member 4D, [RH, Score=48.1, Expect=1e-06]} {RNA1509_37945, RNA1509_42107, RNA1509_56110} {RNA1310_34444, RNA1509_37945, RNA1509_42107, RNA1509_56110} {RNA1509_37945, RNA1509_42107, RNA1509_56110, RNA815_18297}
5.	MligTC455_51405	14	0.3	Mlig455_040732	Neo: - Age: -	TRPC6	0.951	-	-	-	-	0.951	-	Mlig455_040732 {REF} {Length: 2522} {Pfam: Ion transport protein [PF00520.33, score=44.1]} {Human: ENSG00000137672, TRPC6, transient receptor potential cation channel subfamily C member 6, [Score=75.9, Expect=1e-13]; ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [Score=73.9, Expect=5e-13]} {Mouse: ENSMUSG00000070425, Xntrpc, Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough, [Score=82.0, Expect=2e-15]; ENSMUSG00000100254, Trpc2, transient receptor potential cation channel, subfamily C, member 2, [Score=81.3, Expect=2e-15]} {Dmel: FBgn0005614, trpl, transient receptor potential-like, [Score=71.6, Expect=2e-12]} {Celegans: WBGene00006614, trp-1, Transient-receptor-potential-like protein, [Score=72.4, Expect=6e-13]} {Smed: dd_Smed_v6_15627_0_1, dd_Smed_v6_15627_0_1, [Score=82.8, Expect=4e-16]}

Berezikov Lab - 2020-2021 © ERIBA