TomoSeq data search

Data search

Results for MligTC455_27426

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27426

396

8.26

Mlig455_047228

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.225

CTDSP1

Mlig455_047228 {REF} {Length: 3727} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=152.1]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=233, Expect=1e-73]; ENSG00000144677, CTDSPL, CTD small phosphatase like, [RH, Score=229, Expect=1e-71]; ENSG00000175215, CTDSP2, CTD small phosphatase 2, [RH, Score=224, Expect=1e-69]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=233, Expect=1e-73]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=230, Expect=2e-72]; ENSMUSG00000078429, Ctdsp2, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, [RH, Score=226, Expect=1e-70]} {Dmel: FBgn0036556, CG5830, [RH, Score=224, Expect=3e-69]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=224, Expect=2e-67]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=247, Expect=5e-74]} {RNA1509_44735} {RNA1310_14347} {RNA815_5621.1}

Cumulative graph for MligTC455_27426

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.906	3.535	0.34632	0.98992
RegionR2	0.336	3.535	0.56108	0.92327
RegionR3	0.173	3.535	0.71887	1.00000
RegionR4	0.464	3.535	0.41757	0.74517
RegionR5	0.859	3.535	0.03341	0.14013
RegionR6	0.47	3.535	0.32066	0.90953
RegionR7	0.43	3.535	0.47891	1.00000
RegionR8	-0.826	3.535	0.36950	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.02	3.535	0.54428	1.00000
RegenerationR2	0.299	3.535	0.42623	0.83205
RegenerationR3	0.369	3.535	0.40979	0.80831
RegenerationR4	0.203	3.535	0.67595	0.94423
RegenerationR5	-0.374	3.535	0.34362	0.76024
RegenerationR6	0.039	3.535	0.93145	1.00000
RegenerationBL	0.593	3.535	0.32840	0.69467
RegenerationTP	0.285	3.535	0.67787	1.00000

Genes with expression patterns similar to MligTC455_27426

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27426	396	8.26	Mlig455_047228	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.225	CTDSP1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_047228 {REF} {Length: 3727} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=152.1]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=233, Expect=1e-73]; ENSG00000144677, CTDSPL, CTD small phosphatase like, [RH, Score=229, Expect=1e-71]; ENSG00000175215, CTDSP2, CTD small phosphatase 2, [RH, Score=224, Expect=1e-69]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=233, Expect=1e-73]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=230, Expect=2e-72]; ENSMUSG00000078429, Ctdsp2, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, [RH, Score=226, Expect=1e-70]} {Dmel: FBgn0036556, CG5830, [RH, Score=224, Expect=3e-69]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=224, Expect=2e-67]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=247, Expect=5e-74]} {RNA1509_44735} {RNA1310_14347} {RNA815_5621.1}
2.	MligTC455_23119	1081	22.52	Mlig455_065392	Neo: - Age: -	DDX17	0.968	-	-	-	-	-	0.968	Mlig455_065392 {REF} {Length: 2851} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=167.3]; Helicase conserved C-terminal domain [PF00271.33, score=96.8]} {Human: ENSG00000100201, DDX17, DEAD-box helicase 17, [RH, Score=510, Expect=1e-172]} {Mouse: ENSMUSG00000055065, Ddx17, DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, [RH, Score=511, Expect=3e-174]} {Dmel: FBgn0035720, CG10077, [RH, Score=494, Expect=1e-165]} {Celegans: WBGene00010260, ddx-17, DEAD boX helicase homolog, [Score=444, Expect=1e-149]} {Smed: dd_Smed_v6_3743_0_2, dd_Smed_v6_3743_0_2, [RH, Score=521, Expect=3e-179]} {RNA1509_11455, RNA1509_8347} {RNA1310_6636.1, RNA1509_11455, RNA1509_8347} {RNA1509_11455, RNA1509_8347, RNA815_4842.1}
3.	MligTC455_29286	1349	28.11	Mlig455_016468	Neo: - Age: -	KTN1	0.968	-	-	-	-	-	0.968	Mlig455_016468 {REF} {Length: 6708} {TRANSSPLICED} {Human: ENSG00000126777, KTN1, kinectin 1, [RH, Score=57.4, Expect=1e-07]} {Mouse: ENSMUSG00000027422, Rrbp1, ribosome binding protein 1, [Score=56.6, Expect=2e-07]} {Smed: dd_Smed_v6_1111_0_1, dd_Smed_v6_1111_0_1, [RH, Score=102, Expect=3e-22]} {RNA1509_11298} {RNA1310_4678} {RNA815_2519}
4.	MligTC455_21320	3221	67.11	Mlig455_005881, Mlig455_028657, Mlig455_028667	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.234		0.964	-	-	-	-	-	0.964	Mlig455_005881 {REF} {Length: 1281} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.2]} {RNA1509_29559, RNA1509_50493, RNA1509_53534} {RNA1310_29096, RNA1509_29559, RNA1509_50493, RNA1509_53534} {RNA1509_29559, RNA1509_50493, RNA1509_53534, RNA815_12156.1} Mlig455_028657 {REF} {Length: 1282} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.3]} {RNA1509_50493} {RNA1310_29096} {RNA815_12156.1} Mlig455_028667 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13640.8, score=40.2]; Phytanoyl-CoA dioxygenase (PhyH) [PF05721.15, score=19.0]} {RNA1509_53534} {RNA1310_29096} {RNA815_12156.1}
5.	MligTC455_29231	369	7.69	Mlig455_040251, Mlig455_054700	Neo: - Age: logFC(26M/2M)=-0.328	TRIM2	0.964	-	-	-	-	0.964	-	Mlig455_040251 {REF} {Length: 1328} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=29.8]; RING-type zinc-finger [PF13445.8, score=27.1]; Ring finger domain [PF13639.8, score=24.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.9]; zinc-RING finger domain [PF14634.8, score=19.4]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=55.5, Expect=3e-08]; ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=52.8, Expect=2e-07]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=55.5, Expect=2e-08]} {Celegans: WBGene00000264, brc-1, BRCa homolog (Tumor suppressor gene Brca1), [Score=46.6, Expect=8e-06]} {RNA1509_57196} {RNA1310_28463.1, RNA1509_57196} {RNA1509_57196, RNA815_21041} Mlig455_054700 {REF} {Length: 1292} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=29.8]; RING-type zinc-finger [PF13445.8, score=27.1]; Ring finger domain [PF13639.8, score=24.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.5]; zinc-RING finger domain [PF14634.8, score=19.4]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=55.1, Expect=4e-08]; ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=52.4, Expect=3e-07]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=55.5, Expect=2e-08]} {Celegans: WBGene00000264, brc-1, BRCa homolog (Tumor suppressor gene Brca1), [Score=48.5, Expect=2e-06]} {RNA1509_43579, RNA1509_57196} {RNA1310_28463.1, RNA1509_43579} {RNA1509_43579, RNA815_21041}
6.	MligTC455_45212	287	5.97	Mlig455_023937	Neo: - Age: -	TFAP4	0.956	-	-	-	-	-	0.956	Mlig455_023937 {REF} {Length: 2526} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=67.6]} {Human: ENSG00000090447, TFAP4, transcription factor AP-4, [RH, Score=90.5, Expect=1e-19]} {Mouse: ENSMUSG00000005718, Tfap4, transcription factor AP4, [RH, Score=90.9, Expect=6e-20]} {Dmel: FBgn0001994, crp, cropped, [RH, Score=92.8, Expect=3e-20]} {Celegans: WBGene00001955, hlh-11, Helix-loop-helix protein 11, [RH, Score=83.2, Expect=3e-17]} {Smed: dd_Smed_v6_8205_0_1, dd_Smed_v6_8205_0_1, [RH, Score=90.9, Expect=2e-20]} {RNA1509_12849, RNA1509_21993} {RNA1310_9423.1, RNA1509_21993} {RNA1509_21993, RNA815_7350.2}
7.	MligTC455_26751	276	5.74	Mlig455_008891	Neo: - Age: -		0.954	-	-	-	-	0.954	-	Mlig455_008891 {REF} {Length: 2748} {Pfam: Domain of unknown function (DUF4081) [PF13312.8, score=28.5]} {RNA1509_43903} {RNA1310_20783} {RNA815_29971}

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