Data search
Results for MligTC455_21518
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_21518 | 2357 | 49.10 | Mlig455_012901 | Neo: - Age: logFC(26M/2M)=-0.284 |
GHDC | Mlig455_012901 {REF} {Length: 2002} {Pfam: GH3 auxin-responsive promoter [PF03321.15, score=191.7]} {Human: ENSG00000167925, GHDC, GH3 domain containing, [Score=52.0, Expect=1e-06]} {RNA1509_59400} {RNA1310_11058.2} {RNA815_4223.1} |
Cumulative graph for MligTC455_21518
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.431 | 5.62 | 0.48514 | 1.00000 | |
| RegionR2 | -0.733 | 5.62 | 0.03505 | 0.21495 | |
| RegionR3 | -0.076 | 5.62 | 0.79559 | 1.00000 | |
| RegionR4 | 0.091 | 5.62 | 0.79432 | 1.00000 | |
| RegionR5 | -0.578 | 5.62 | 0.05447 | 0.19913 | |
| RegionR6 | 0.242 | 5.62 | 0.40245 | 0.97366 | |
| RegionR7 | 0.844 | 5.62 | 0.00652 | 0.13177 | |
| RegionR8 | 0.64 | 5.62 | 0.08851 | 0.56277 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -1.493 | 5.62 | 0.12828 | 0.86112 | |
| RegenerationR2 | 1.019 | 5.62 | 0.00258 | 0.07675 | |
| RegenerationR3 | 0.122 | 5.62 | 0.72996 | 0.95770 | |
| RegenerationR4 | -0.039 | 5.62 | 0.91672 | 1.00000 | |
| RegenerationR5 | -0.058 | 5.62 | 0.87338 | 1.00000 | |
| RegenerationR6 | -0.376 | 5.62 | 0.30001 | 0.65003 | |
| RegenerationBL | 0.107 | 5.62 | 0.74420 | 1.00000 | |
| RegenerationTP | -0.165 | 5.62 | 0.64190 | 0.98423 |
Genes with expression patterns similar to MligTC455_21518
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_21518 | 2357 | 49.1 | Mlig455_012901 | Neo: - Age: logFC(26M/2M)=-0.284 |
GHDC | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_012901 {REF} {Length: 2002} {Pfam: GH3 auxin-responsive promoter [PF03321.15, score=191.7]} {Human: ENSG00000167925, GHDC, GH3 domain containing, [Score=52.0, Expect=1e-06]} {RNA1509_59400} {RNA1310_11058.2} {RNA815_4223.1} |
| 2. | MligTC455_17865 | 2593 | 54.02 | Mlig455_034927 | Neo: - Age: Down-Up-Up |
FANK1 | 1.783 | - | - | - | 0.827 | 0.956 | - | Mlig455_034927 {REF} {Length: 1596} {TRANSSPLICED} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=107.8]; Ankyrin repeats (3 copies) [PF12796.9, score=102.8]; Ankyrin repeats (many copies) [PF13857.8, score=85.2]; Ankyrin repeat [PF00023.32, score=73.5]; Ankyrin repeat [PF13606.8, score=64.1]} {Human: ENSG00000203780, FANK1, fibronectin type III and ankyrin repeat domains 1, [Score=174, Expect=7e-51]} {Mouse: ENSMUSG00000053111, Fank1, fibronectin type 3 and ankyrin repeat domains 1, [RH, Score=174, Expect=7e-51]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=93.2, Expect=3e-20]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=94.7, Expect=8e-21]} {Smed: dd_Smed_v6_7571_0_2, dd_Smed_v6_7571_0_2, [RH, Score=253, Expect=9e-82]} {RNA1509_6757} {RNA1310_18708, RNA1509_6757} {RNA1509_6757, RNA815_8175} |
| 3. | MligTC455_28430 | 161 | 3.35 | Mlig455_058777, Mlig455_066475 | Neo: - Age: - |
1.774 | - | - | - | - | 0.972 | 0.802 | Mlig455_058777 {REF} {Length: 1822} {RNA1509_18349} {RNA1310_37185} {RNA815_17990} Mlig455_066475 {REF} {Length: 5204} {tRNA: Val(CAC),pseudo, score=36.5} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1} |
|
| 4. | MligTC455_16253 | 429 | 8.94 | Mlig455_047310 | Neo: - Age: - |
0.963 | - | - | - | - | 0.963 | - | Mlig455_047310 {REF} {Length: 1950} {NoTransDecoderORF} {RNA1509_45784} {RNA1310_39616} {RNA815_1612} | |
| 5. | MligTC455_41326 | 407 | 8.48 | Mlig455_011060 | Neo: - Age: - |
KCNA2 | 0.96 | - | - | - | - | - | 0.960 | Mlig455_011060 {REF} {Length: 6096} {Pfam: Ion transport protein [PF00520.33, score=161.6]; BTB/POZ domain [PF02214.24, score=99.2]; Ion channel [PF07885.18, score=50.3]} {Human: ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [RH, Score=620, Expect=0.0]; ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [RH, Score=617, Expect=0.0]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [RH, Score=611, Expect=0.0]} {Mouse: ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [RH, Score=619, Expect=0.0]; ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [RH, Score=617, Expect=0.0]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [RH, Score=607, Expect=0.0]} {Dmel: FBgn0003380, Sh, Shaker, [RH, Score=643, Expect=0.0]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [RH, Score=383, Expect=6e-127]} {Smed: dd_Smed_v6_15425_0_1, dd_Smed_v6_15425_0_1, [RH, Score=715, Expect=0.0]} {RNA1509_19798} {RNA1310_8877, RNA1509_19798} {RNA1509_19798, RNA815_8082.1} |
| 6. | MligTC455_21031 | 1214 | 25.28 | Mlig455_003002, Mlig455_005355, Mlig455_011083, Mlig455_058465 | Neo: - Age: - |
0.95 | - | - | - | - | 0.950 | - | Mlig455_003002 {REF} {Length: 1260} {TRANSSPLICED} {RNA1509_51769} {RNA1310_8260.1} {RNA815_20588} Mlig455_005355 {REF} {Length: 1279} {TRANSSPLICED} {RNA1509_51769} {RNA1310_8260.1} {RNA815_20588} Mlig455_011083 {REF} {Length: 1977} {RNA1509_51769} {RNA1310_8260.1} {RNA815_20588} Mlig455_058465 {REF} {Length: 1687} {TRANSSPLICED} {RNA1509_51769} {RNA1310_8260.1} {RNA815_20588} |
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