M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21677

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21677 667 13.89 Mlig455_000985

Neo: -

Age: -

 GLUD1 Mlig455_000985 {REF} {Length: 3362} {TRANSSPLICED} {Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain [PF02812.20, score=195.9]; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=171.1]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [RH, Score=770, Expect=0.0]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [RH, Score=774, Expect=0.0]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [RH, Score=758, Expect=0.0]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [RH, Score=730, Expect=0.0]} {RNA1509_4202} {RNA1310_4820.1} {RNA815_2103.3}

Cumulative graph for MligTC455_21677

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.912 4.173 0.02181 0.40286
RegionR2 0.834 4.173 0.15477 0.49227
RegionR3 1.204 4.173 0.00708 0.12103
RegionR4 -0.133 4.173 0.83820 1.00000
RegionR5 0.654 4.173 0.14043 0.38567
RegionR6 0.631 4.173 0.18948 0.75558
RegionR7 0.069 4.173 0.89872 1.00000
RegionR8 0.653 4.173 0.28938 0.91705

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.704 4.173 0.09340 0.80177
RegenerationR2 -0.646 4.173 0.17703 0.61764
RegenerationR3 -0.408 4.173 0.42135 0.81620
RegenerationR4 0.437 4.173 0.41514 0.82340
RegenerationR5 0.194 4.173 0.68038 0.94415
RegenerationR6 0.084 4.173 0.86551 1.00000
RegenerationBL -0.071 4.173 0.90129 1.00000
RegenerationTP -1.928 4.173 0.01180 0.18501


Genes with expression patterns similar to MligTC455_21677

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21677 667 13.89 Mlig455_000985

Neo: -

Age: -

 GLUD1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000985 {REF} {Length: 3362} {TRANSSPLICED} {Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain [PF02812.20, score=195.9]; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=171.1]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [RH, Score=770, Expect=0.0]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [RH, Score=774, Expect=0.0]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [RH, Score=758, Expect=0.0]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [RH, Score=730, Expect=0.0]} {RNA1509_4202} {RNA1310_4820.1} {RNA815_2103.3}
2. MligTC455_21678 1081 22.51 Mlig455_037512, Mlig455_037593

Neo: -

Age: -

 GLUD1 1.71 - 0.747 - - 0.963 -

Mlig455_037512 {REF} {Length: 3362} {TRANSSPLICED} {Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain [PF02812.20, score=195.9]; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=171.1]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [RH, Score=770, Expect=0.0]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [RH, Score=774, Expect=0.0]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [RH, Score=758, Expect=0.0]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [RH, Score=730, Expect=0.0]} {RNA1509_33112, RNA1509_40804, RNA1509_4202} {RNA1310_4820.1, RNA1509_33112, RNA1509_40804, RNA1509_4202} {RNA1509_33112, RNA1509_40804, RNA1509_4202, RNA815_2103.3}

Mlig455_037593 {REF} {Length: 3377} {TRANSSPLICED} {Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain [PF02812.20, score=195.9]; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=171.1]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [RH, Score=770, Expect=0.0]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [RH, Score=774, Expect=0.0]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [RH, Score=758, Expect=0.0]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [RH, Score=730, Expect=0.0]} {RNA1509_13169, RNA1509_26573, RNA1509_4202, RNA1509_48691, RNA1509_55996} {RNA1310_4820.1, RNA1509_13169, RNA1509_26573, RNA1509_48691, RNA1509_55996} {RNA1509_13169, RNA1509_26573, RNA1509_48691, RNA1509_55996, RNA815_2103.3}
3. MligTC455_12534 1611 33.55 Mlig455_046860

Neo: Int S/G2/M

Age: -

 NOP53 0.973 - - - 0.973 - - Mlig455_046860 {REF} {Length: 1829} {TRANSSPLICED} {Pfam: Nop53 (60S ribosomal biogenesis) [PF07767.13, score=161.6]} {Human: ENSG00000105373, NOP53, NOP53 ribosome biogenesis factor, [RH, Score=121, Expect=2e-29]} {Mouse: ENSMUSG00000041560, Nop53, NOP53 ribosome biogenesis factor, [RH, Score=117, Expect=2e-28]} {Dmel: FBgn0030061, CG1785, [RH, Score=82.4, Expect=1e-16]} {Celegans: WBGene00012692, Y39B6A.33, [RH, Score=53.9, Expect=1e-07]} {RNA1509_22656, RNA1509_4085} {RNA1310_16335, RNA1509_22656, RNA1509_4085} {RNA1509_22656, RNA1509_4085, RNA815_6216}
4. MligTC455_48765 1451 30.23 Mlig455_005136, Mlig455_005173

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.217

Region-enriched R5: 1.029/0.01372

 PUS10 0.96 - - - 0.960 - -

Mlig455_005136 {REF} {Length: 2207} {TRANSSPLICED} {Human: ENSG00000162927, PUS10, pseudouridylate synthase 10, [RH, Score=263, Expect=1e-80]} {Mouse: ENSMUSG00000020280, Pus10, pseudouridylate synthase 10, [RH, Score=272, Expect=2e-84]} {Dmel: FBgn0031227, CG3709, [RH, Score=183, Expect=3e-51]} {Celegans: WBGene00012998, Y48C3A.20, [RH, Score=162, Expect=7e-44]} {Smed: dd_Smed_v6_6918_0_1, dd_Smed_v6_6918_0_1, [RH, Score=219, Expect=3e-64]} {RNA1509_26906} {RNA1310_11516, RNA1509_26906} {RNA1509_26906, RNA815_24177}

Mlig455_005173 {REF} {Length: 2159} {TRANSSPLICED} {Human: ENSG00000162927, PUS10, pseudouridylate synthase 10, [RH, Score=262, Expect=8e-80]} {Mouse: ENSMUSG00000020280, Pus10, pseudouridylate synthase 10, [RH, Score=271, Expect=1e-83]} {Dmel: FBgn0031227, CG3709, [RH, Score=182, Expect=2e-50]} {Celegans: WBGene00012998, Y48C3A.20, [RH, Score=159, Expect=2e-42]} {Smed: dd_Smed_v6_6918_0_1, dd_Smed_v6_6918_0_1, [RH, Score=219, Expect=1e-63]} {RNA1509_26906} {RNA1310_11516} {RNA815_24177}
5. MligTC455_28583 1530 31.88 Mlig455_069282

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.324

 FKBP8 0.959 - - - - - 0.959 Mlig455_069282 {REF} {Length: 2937} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=36.8]; Tetratricopeptide repeat [PF00515.30, score=32.4]; Tetratricopeptide repeat [PF07719.19, score=26.5]; Tetratricopeptide repeat [PF13181.8, score=19.3]} {Human: ENSG00000105701, FKBP8, FK506 binding protein 8, [Score=143, Expect=2e-36]} {Mouse: ENSMUSG00000019428, Fkbp8, FK506 binding protein 8, [Score=139, Expect=3e-35]} {Dmel: FBgn0034368, CG5482, [RH, Score=182, Expect=8e-51]} {Celegans: WBGene00001431, fkb-6, Peptidylprolyl isomerase, [Score=67.0, Expect=2e-11]} {Smed: dd_Smed_v6_1474_0_1, dd_Smed_v6_1474_0_1, [Score=159, Expect=1e-41]} {RNA1509_26580} {RNA1310_10924.2} {RNA815_2056.1}
6. MligTC455_53169 434 9.04 Mlig455_018355

Neo: -

Age: -

 PNPLA6 0.959 - - - - - 0.959 Mlig455_018355 {REF} {Length: 7634} {TRANSSPLICED} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=138.4]; Patatin-like phospholipase [PF01734.24, score=77.9]} {Human: ENSG00000032444, PNPLA6, patatin like phospholipase domain containing 6, [RH, Score=806, Expect=0.0]; ENSG00000130653, PNPLA7, patatin like phospholipase domain containing 7, [RH, Score=790, Expect=0.0]} {Mouse: ENSMUSG00000004565, Pnpla6, patatin-like phospholipase domain containing 6, [RH, Score=798, Expect=0.0]; ENSMUSG00000036833, Pnpla7, patatin-like phospholipase domain containing 7, [RH, Score=778, Expect=0.0]} {Dmel: FBgn0003656, sws, swiss cheese, [RH, Score=689, Expect=0.0]} {Celegans: WBGene00022718, ZK370.4, Uncharacterized NTE family protein ZK370.4, [RH, Score=604, Expect=0.0]} {Smed: dd_Smed_v6_11184_0_1, dd_Smed_v6_11184_0_1, [RH, Score=805, Expect=0.0]} {RNA1509_21214} {RNA1310_1952.1} {RNA815_1204}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA