M. lignano Tomo-Seq
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Results for MligTC455_48765

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48765 1451 30.23 Mlig455_005136, Mlig455_005173

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.217

Region-enriched R5: 1.029/0.01372

 PUS10

Mlig455_005136 {REF} {Length: 2207} {TRANSSPLICED} {Human: ENSG00000162927, PUS10, pseudouridylate synthase 10, [RH, Score=263, Expect=1e-80]} {Mouse: ENSMUSG00000020280, Pus10, pseudouridylate synthase 10, [RH, Score=272, Expect=2e-84]} {Dmel: FBgn0031227, CG3709, [RH, Score=183, Expect=3e-51]} {Celegans: WBGene00012998, Y48C3A.20, [RH, Score=162, Expect=7e-44]} {Smed: dd_Smed_v6_6918_0_1, dd_Smed_v6_6918_0_1, [RH, Score=219, Expect=3e-64]} {RNA1509_26906} {RNA1310_11516, RNA1509_26906} {RNA1509_26906, RNA815_24177}

Mlig455_005173 {REF} {Length: 2159} {TRANSSPLICED} {Human: ENSG00000162927, PUS10, pseudouridylate synthase 10, [RH, Score=262, Expect=8e-80]} {Mouse: ENSMUSG00000020280, Pus10, pseudouridylate synthase 10, [RH, Score=271, Expect=1e-83]} {Dmel: FBgn0031227, CG3709, [RH, Score=182, Expect=2e-50]} {Celegans: WBGene00012998, Y48C3A.20, [RH, Score=159, Expect=2e-42]} {Smed: dd_Smed_v6_6918_0_1, dd_Smed_v6_6918_0_1, [RH, Score=219, Expect=1e-63]} {RNA1509_26906} {RNA1310_11516} {RNA815_24177}

Cumulative graph for MligTC455_48765

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.567 5.113 0.49474 1.00000
RegionR2 -0.167 5.113 0.71405 1.00000
RegionR3 0.415 5.113 0.27083 0.81519
RegionR4 -0.242 5.113 0.58108 0.89734
RegionR5 1.029 5.113 0.00146 0.01372
RegionR6 -0.022 5.113 0.95405 1.00000
RegionR7 -0.472 5.113 0.29869 0.93348
RegionR8 0.026 5.113 0.95675 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.503 5.113 0.11711 0.84446
RegenerationR2 -0.105 5.113 0.81501 0.99439
RegenerationR3 0.387 5.113 0.39444 0.79902
RegenerationR4 0.526 5.113 0.26581 0.71336
RegenerationR5 0.182 5.113 0.67255 0.94198
RegenerationR6 0.811 5.113 0.07677 0.34626
RegenerationBL 0.478 5.113 0.31539 0.68195
RegenerationTP -0.993 5.113 0.09682 0.48669


Genes with expression patterns similar to MligTC455_48765

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48765 1451 30.23 Mlig455_005136, Mlig455_005173

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.217

Region-enriched R5: 1.029/0.01372

 PUS10 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_005136 {REF} {Length: 2207} {TRANSSPLICED} {Human: ENSG00000162927, PUS10, pseudouridylate synthase 10, [RH, Score=263, Expect=1e-80]} {Mouse: ENSMUSG00000020280, Pus10, pseudouridylate synthase 10, [RH, Score=272, Expect=2e-84]} {Dmel: FBgn0031227, CG3709, [RH, Score=183, Expect=3e-51]} {Celegans: WBGene00012998, Y48C3A.20, [RH, Score=162, Expect=7e-44]} {Smed: dd_Smed_v6_6918_0_1, dd_Smed_v6_6918_0_1, [RH, Score=219, Expect=3e-64]} {RNA1509_26906} {RNA1310_11516, RNA1509_26906} {RNA1509_26906, RNA815_24177}

Mlig455_005173 {REF} {Length: 2159} {TRANSSPLICED} {Human: ENSG00000162927, PUS10, pseudouridylate synthase 10, [RH, Score=262, Expect=8e-80]} {Mouse: ENSMUSG00000020280, Pus10, pseudouridylate synthase 10, [RH, Score=271, Expect=1e-83]} {Dmel: FBgn0031227, CG3709, [RH, Score=182, Expect=2e-50]} {Celegans: WBGene00012998, Y48C3A.20, [RH, Score=159, Expect=2e-42]} {Smed: dd_Smed_v6_6918_0_1, dd_Smed_v6_6918_0_1, [RH, Score=219, Expect=1e-63]} {RNA1509_26906} {RNA1310_11516} {RNA815_24177}
2. MligTC455_42686 383 7.98 Mlig455_023785

Neo: -

Age: Up-Up-Down

 PIGZ 1.686 - - - 0.716 0.970 - Mlig455_023785 {REF} {Length: 2574} {TRANSSPLICED} {Pfam: Alg9-like mannosyltransferase family [PF03901.19, score=91.7]} {Human: ENSG00000119227, PIGZ, phosphatidylinositol glycan anchor biosynthesis class Z, [Score=61.6, Expect=1e-09]} {Dmel: FBgn0266438, PIG-Z, Phosphatidylinositol glycan anchor biosynthesis class Z, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_14430_0_2, dd_Smed_v6_14430_0_2, [Score=67.0, Expect=5e-12]} {RNA1509_51308} {RNA1310_14478} {RNA815_7374}
3. MligTC455_21677 667 13.89 Mlig455_000985

Neo: -

Age: -

 GLUD1 0.96 - - - 0.960 - - Mlig455_000985 {REF} {Length: 3362} {TRANSSPLICED} {Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain [PF02812.20, score=195.9]; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=171.1]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [RH, Score=770, Expect=0.0]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [RH, Score=774, Expect=0.0]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [RH, Score=758, Expect=0.0]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [RH, Score=646, Expect=0.0]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [RH, Score=730, Expect=0.0]} {RNA1509_4202} {RNA1310_4820.1} {RNA815_2103.3}
4. MligTC455_23996 352 7.33 Mlig455_048703, Mlig455_069752

Neo: -

Age: logFC(26M/2M)=-0.321

Regeneration-upregulated R6: 2.385

Regeneration-enriched R6: 2.385

 FBXW5 0.957 - - - - 0.957 -

Mlig455_048703 {REF} {Length: 4783} {TRANSSPLICED} {Pfam: Las1-like [PF04031.15, score=77.0]} {RNA1509_26789} {RNA1310_15916} {RNA815_6066}

Mlig455_069752 {REF} {Length: 6134} {Pfam: Las1-like [PF04031.15, score=76.4]; WD domain, G-beta repeat [PF00400.34, score=28.6]} {Human: ENSG00000159069, FBXW5, F-box and WD repeat domain containing 5, [Score=99.0, Expect=4e-21]} {Mouse: ENSMUSG00000015095, Fbxw5, F-box and WD-40 domain protein 5, [Score=97.8, Expect=7e-21]} {Dmel: FBgn0031773, Fbw5, F-box and WD repeat domain containing 5, [Score=120, Expect=3e-28]} {RNA1509_48790} {RNA1310_10269.1} {RNA815_6066}

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