TomoSeq data search

Data search

Results for MligTC455_22019

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_22019

18

0.38

Mlig455_006619, Mlig455_023141

Neo: -

Age: -

RTL1

Mlig455_006619 {REF} {Length: 7104} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=59.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=32.8]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=80.5, Expect=5e-17]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=138, Expect=1e-39]} {RNA1509_38146} {RNA1310_9809} {RNA815_20192}

Mlig455_023141 {REF} {Length: 2489} {Pfam: PNMA [PF14893.8, score=26.4]} {RNA1509_38146, RNA1509_39864} {RNA1310_9809, RNA1509_39864} {RNA1509_39864, RNA815_20192}

Cumulative graph for MligTC455_22019

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.12	0.859	1.00000	1.00000
RegionR2	0.178	0.859	1.00000	1.00000
RegionR3	-1.312	0.859	1.00000	1.00000
RegionR4	0.627	0.859	0.86526	1.00000
RegionR5	1.626	0.859	0.99945	1.00000
RegionR6	-1.294	0.859	1.00000	1.00000
RegionR7	0.112	0.859	1.00000	1.00000
RegionR8	0.182	0.859	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.457	0.859	0.99964	1.00000
RegenerationR2	2.678	0.859	0.16641	0.60422
RegenerationR3	1.942	0.859	0.57588	0.89703
RegenerationR4	0.791	0.859	0.81327	0.99056
RegenerationR5	1.654	0.859	0.67925	0.94390
RegenerationR6	1.146	0.859	0.62373	0.88323
RegenerationBL	0.396	0.859	1.00000	1.00000
RegenerationTP	2.626	0.859	0.71570	1.00000

Genes with expression patterns similar to MligTC455_22019

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_22019	18	0.38	Mlig455_006619, Mlig455_023141	Neo: - Age: -	RTL1	2	1.000	-	-	-	1.000	-	Mlig455_006619 {REF} {Length: 7104} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=59.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=32.8]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=80.5, Expect=5e-17]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=138, Expect=1e-39]} {RNA1509_38146} {RNA1310_9809} {RNA815_20192} Mlig455_023141 {REF} {Length: 2489} {Pfam: PNMA [PF14893.8, score=26.4]} {RNA1509_38146, RNA1509_39864} {RNA1310_9809, RNA1509_39864} {RNA1509_39864, RNA815_20192}
2.	MligTC455_36329	26	0.54	Mlig455_013522, Mlig455_061357	Neo: - Age: Down-Up-Down	KREMEN2	0.977	-	-	-	-	0.977	-	Mlig455_013522 {REF} {Length: 1714} {Pfam: WSC domain [PF01822.21, score=63.4]; F5/8 type C domain [PF00754.27, score=53.4]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [RH, Score=66.6, Expect=3e-11]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [RH, Score=66.2, Expect=3e-11]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=48.9, Expect=8e-06]} {Smed: dd_Smed_v6_52492_0_1, dd_Smed_v6_52492_0_1, [Score=52.0, Expect=4e-08]} {RNA1509_28333} {RNA1310_11815} {RNA815_612.1} Mlig455_061357 {REF} {Length: 725} {Pfam: F5/8 type C domain [PF00754.27, score=34.9]} {Smed: dd_Smed_v6_52492_0_1, dd_Smed_v6_52492_0_1, [Score=51.6, Expect=2e-08]} {RNA1509_2195} {RNA1310_4987.1} {RNA815_612.1}
3.	MligTC455_21331	24	0.51	Mlig455_020847	Neo: - Age: -		0.973	-	-	-	-	0.973	-	Mlig455_020847 {REF} {Length: 1646} {RNA1509_46103} {RNA1310_42929} {RNA815_8813.1}
4.	MligTC455_38866	44	0.93	Mlig455_053830	Neo: Irradiation Age: - Region-enriched R5: 2.710/0.02791		0.973	-	-	-	-	0.973	-	Mlig455_053830 {REF} {Length: 2741} {Pfam: THAP domain [PF05485.14, score=36.6]; Glycine rich protein [PF12810.9, score=18.5]} {RNA1509_12139} {RNA1310_31697} {RNA815_50211}
5.	MligTC455_41791	6	0.13	Mlig455_034197	Neo: - Age: -	WSCD1	0.973	-	-	-	-	0.973	-	Mlig455_034197 {REF} {Length: 946} {Pfam: WSC domain [PF01822.21, score=45.7]; PAN domain [PF00024.28, score=20.4]} {Human: ENSG00000179314, WSCD1, WSC domain containing 1, [Score=58.2, Expect=3e-09]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=52.0, Expect=2e-07]; ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=52.0, Expect=2e-07]; ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=51.2, Expect=4e-07]} {RNA1310_39474.1} {RNA815_33128}
6.	MligTC455_45069	4	0.08	Mlig455_009926	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.810	DICER1	0.971	-	-	-	-	0.971	-	Mlig455_009926 {REF} {Length: 2597} {TRANSSPLICED} {Pfam: Helicase conserved C-terminal domain [PF00271.33, score=57.2]; Type III restriction enzyme, res subunit [PF04851.17, score=35.6]; DEAD/DEAH box helicase [PF00270.31, score=21.9]} {Human: ENSG00000100697, DICER1, dicer 1, ribonuclease III, [Score=115, Expect=3e-26]} {Mouse: ENSMUSG00000041415, Dicer1, dicer 1, ribonuclease type III, [Score=120, Expect=1e-27]} {Dmel: FBgn0034246, Dcr-2, Dicer-2, [Score=93.2, Expect=3e-19]} {Celegans: WBGene00000939, dcr-1, Endoribonuclease dcr-1, [Score=125, Expect=2e-29]} {Smed: dd_Smed_v6_8502_0_1, dd_Smed_v6_8502_0_1, [Score=219, Expect=6e-61]} {RNA1509_8443} {RNA1310_1036} {RNA815_4663}
7.	MligTC455_19966	28	0.59	Mlig455_007419	Neo: - Age: Up-Down-Down		0.97	-	-	-	-	0.970	-	Mlig455_007419 {REF} {Length: 1601} {NoTransDecoderORF} {RNA1509_51785} {RNA1310_77392} {RNA815_14770.1}

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