M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22148

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22148 59 1.24 Mlig455_054943

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.887

 XDH Mlig455_054943 {REF} {Length: 5663} {Pfam: Molybdopterin-binding domain of aldehyde dehydrogenase [PF02738.20, score=363.8]; EF-hand domain pair [PF13499.8, score=113.4]; EF hand [PF00036.34, score=108.8]; [2Fe-2S] binding domain [PF01799.22, score=95.7]; EF-hand domain [PF13405.8, score=88.2]; EF-hand domain pair [PF13833.8, score=75.8]; EF hand [PF13202.8, score=73.1]; EF-hand domain [PF14658.8, score=47.8]; FAD binding domain in molybdopterin dehydrogenase [PF00941.23, score=23.1]; CO dehydrogenase flavoprotein C-terminal domain [PF03450.19, score=21.0]} {Human: ENSG00000158125, XDH, xanthine dehydrogenase, [Score=260, Expect=2e-70]; ENSG00000138356, AOX1, aldehyde oxidase 1, [Score=249, Expect=7e-67]} {Mouse: ENSMUSG00000024066, Xdh, xanthine dehydrogenase, [Score=273, Expect=9e-75]} {Dmel: FBgn0038349, AOX3, Aldehyde oxidase 3, [Score=284, Expect=1e-78]} {Celegans: WBGene00010083, xhd-1, [Score=268, Expect=3e-73]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=155, Expect=1e-43]} {RNA1509_5953} {RNA1310_14932} {RNA815_18862}

Cumulative graph for MligTC455_22148

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.568 1.457 0.99977 1.00000
RegionR2 1.292 1.457 0.53721 0.90658
RegionR3 1.876 1.457 0.22744 0.76899
RegionR4 1.349 1.457 0.29402 0.60559
RegionR5 1.418 1.457 0.28549 0.61549
RegionR6 2.145 1.457 0.19140 0.75884
RegionR7 -1.612 1.457 1.00000 1.00000
RegionR8 -1.899 1.457 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.975 1.457 0.99993 1.00000
RegenerationR2 2.412 1.457 0.05534 0.38761
RegenerationR3 2.52 1.457 0.03548 0.33382
RegenerationR4 2.301 1.457 0.05607 0.37968
RegenerationR5 1.541 1.457 0.15107 0.56929
RegenerationR6 1.329 1.457 0.28457 0.63472
RegenerationBL 3.664 1.457 0.07697 0.32393
RegenerationTP 0.576 1.457 1.00000 1.00000


Genes with expression patterns similar to MligTC455_22148

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22148 59 1.24 Mlig455_054943

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.887

 XDH 4 - 1.000 - 1.000 1.000 1.000 Mlig455_054943 {REF} {Length: 5663} {Pfam: Molybdopterin-binding domain of aldehyde dehydrogenase [PF02738.20, score=363.8]; EF-hand domain pair [PF13499.8, score=113.4]; EF hand [PF00036.34, score=108.8]; [2Fe-2S] binding domain [PF01799.22, score=95.7]; EF-hand domain [PF13405.8, score=88.2]; EF-hand domain pair [PF13833.8, score=75.8]; EF hand [PF13202.8, score=73.1]; EF-hand domain [PF14658.8, score=47.8]; FAD binding domain in molybdopterin dehydrogenase [PF00941.23, score=23.1]; CO dehydrogenase flavoprotein C-terminal domain [PF03450.19, score=21.0]} {Human: ENSG00000158125, XDH, xanthine dehydrogenase, [Score=260, Expect=2e-70]; ENSG00000138356, AOX1, aldehyde oxidase 1, [Score=249, Expect=7e-67]} {Mouse: ENSMUSG00000024066, Xdh, xanthine dehydrogenase, [Score=273, Expect=9e-75]} {Dmel: FBgn0038349, AOX3, Aldehyde oxidase 3, [Score=284, Expect=1e-78]} {Celegans: WBGene00010083, xhd-1, [Score=268, Expect=3e-73]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=155, Expect=1e-43]} {RNA1509_5953} {RNA1310_14932} {RNA815_18862}
2. MligTC455_35346 192 4.01 Mlig455_048607

Neo: Germline

Age: -

 EEF1AKMT1 0.983 - - - - 0.983 - Mlig455_048607 {REF} {Length: 3819} {TRANSSPLICED} {Pfam: Probable N6-adenine methyltransferase [PF10237.11, score=21.1]} {Human: ENSG00000150456, EEF1AKMT1, EEF1A lysine methyltransferase 1, [Score=54.3, Expect=2e-07]} {RNA1509_53108} {RNA1310_10906} {RNA815_6370.1}
3. MligTC455_15094 117 2.45 Mlig455_041675

Neo: -

Age: -

Region-enriched R4: 3.891/0.00174
Region-enriched R3: 3.545/0.00033

 0.971 - - - - - 0.971 Mlig455_041675 {REF} {Length: 214} {NoTransDecoderORF} {RNA1509_34671} {RNA1310_22958} {RNA815_52664}
4. MligTC455_03852 16 0.33 Mlig455_003370

Neo: -

Age: Up-Down-Up

 SLC26A6 0.968 - - - - - 0.968 Mlig455_003370 {REF} {Length: 2229} {Pfam: Sulfate permease family [PF00916.22, score=288.5]} {Human: ENSG00000225697, SLC26A6, solute carrier family 26 member 6, [Score=242, Expect=4e-70]; ENSG00000091137, SLC26A4, solute carrier family 26 member 4, [Score=241, Expect=2e-69]; ENSG00000170615, SLC26A5, solute carrier family 26 member 5, [Score=239, Expect=6e-71]; ENSG00000147606, SLC26A7, solute carrier family 26 member 7, [Score=233, Expect=2e-67]} {Mouse: ENSMUSG00000034320, Slc26a2, solute carrier family 26 (sulfate transporter), member 2, [Score=253, Expect=2e-74]; ENSMUSG00000023259, Slc26a6, solute carrier family 26, member 6, [Score=251, Expect=8e-75]; ENSMUSG00000107138, Slc26a6, solute carrier family 26, member 6, [Score=251, Expect=8e-75]} {Dmel: FBgn0036770, Prestin, [Score=221, Expect=1e-62]} {Celegans: WBGene00013963, sulp-8, Anion transporter SULP-8a; Anion transporter SULP-8b; SULfate Permease family, [Score=248, Expect=8e-74]} {Smed: dd_Smed_v6_16869_0_1, dd_Smed_v6_16869_0_1, [Score=348, Expect=2e-113]} {RNA1509_42083} {RNA1310_15401} {RNA815_12837}
5. MligTC455_47431 518 10.79 Mlig455_028915, Mlig455_028923

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.553

 NCAM2 0.952 - 0.952 - - - -

Mlig455_028915 {REF} {Length: 3872} {Pfam: Immunoglobulin domain [PF13927.8, score=180.6]; Immunoglobulin domain [PF13895.8, score=139.4]; Immunoglobulin I-set domain [PF07679.18, score=116.1]; Immunoglobulin domain [PF00047.27, score=103.8]; Immunoglobulin V-set domain [PF07686.19, score=58.5]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=50.0]; Fibronectin type III domain [PF00041.23, score=39.5]; Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain [PF16681.7, score=29.8]; Izumo-like Immunoglobulin domain [PF16706.7, score=23.1]; Immunoglobulin domain [PF18452.3, score=19.1]} {Human: ENSG00000154654, NCAM2, neural cell adhesion molecule 2, [RH, Score=132, Expect=5e-31]} {Mouse: ENSMUSG00000022762, Ncam2, neural cell adhesion molecule 2, [RH, Score=138, Expect=8e-33]} {Dmel: FBgn0051774, fred, friend of echinoid, [RH, Score=214, Expect=2e-56]} {Celegans: WBGene00018215, igcm-1, ImmunoGlobulin-like Cell adhesion Molecule family, [Score=146, Expect=1e-35]} {Smed: dd_Smed_v6_13903_0_1, dd_Smed_v6_13903_0_1, [Score=199, Expect=6e-52]} {RNA1509_2599} {RNA1310_2105} {RNA815_9971}

Mlig455_028923 {REF} {Length: 4542} {Pfam: Immunoglobulin domain [PF13927.8, score=192.9]; Immunoglobulin domain [PF13895.8, score=142.4]; Immunoglobulin I-set domain [PF07679.18, score=125.4]; Immunoglobulin domain [PF00047.27, score=118.2]; Immunoglobulin V-set domain [PF07686.19, score=72.3]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=49.2]; Fibronectin type III domain [PF00041.23, score=39.6]; Izumo-like Immunoglobulin domain [PF16706.7, score=27.4]; Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain [PF16681.7, score=26.7]; Immunoglobulin domain [PF18452.3, score=19.8]} {Human: ENSG00000154654, NCAM2, neural cell adhesion molecule 2, [RH, Score=135, Expect=8e-32]} {Mouse: ENSMUSG00000022762, Ncam2, neural cell adhesion molecule 2, [RH, Score=141, Expect=1e-33]} {Dmel: FBgn0051774, fred, friend of echinoid, [RH, Score=221, Expect=1e-58]} {Celegans: WBGene00018215, igcm-1, ImmunoGlobulin-like Cell adhesion Molecule family, [Score=157, Expect=1e-38]} {Smed: dd_Smed_v6_13903_0_1, dd_Smed_v6_13903_0_1, [RH, Score=210, Expect=2e-55]} {RNA1509_2599} {RNA1310_2105} {RNA815_9971}
6. MligTC455_20084 569 11.85 Mlig455_034786

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.575

Region-enriched R3: 2.972/0.00007
Region-enriched R4: 2.323/0.01179

 DNASE1L2 0.951 - - - - - 0.951 Mlig455_034786 {REF} {Length: 1822} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=38.1]} {Human: ENSG00000167968, DNASE1L2, deoxyribonuclease 1 like 2, [RH, Score=185, Expect=8e-55]; ENSG00000163687, DNASE1L3, deoxyribonuclease 1 like 3, [RH, Score=185, Expect=2e-54]; ENSG00000213918, DNASE1, deoxyribonuclease 1, [RH, Score=181, Expect=2e-53]} {Mouse: ENSMUSG00000025279, Dnase1l3, deoxyribonuclease 1-like 3, [RH, Score=184, Expect=3e-54]; ENSMUSG00000024136, Dnase1l2, deoxyribonuclease 1-like 2, [RH, Score=180, Expect=4e-53]; ENSMUSG00000005980, Dnase1, deoxyribonuclease I, [RH, Score=178, Expect=3e-52]} {RNA1509_8194} {RNA1310_18116, RNA1509_8194} {RNA1509_8194, RNA815_13867}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA