TomoSeq data search

Data search

Results for MligTC455_22244

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_22244	709	14.77	Mlig455_028474	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.304	HIVEP2	Mlig455_028474 {REF} {Length: 8097} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=77.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=48.1]; C2H2-type zinc finger [PF13894.8, score=47.9]; Zinc-finger of C2H2 type [PF12874.9, score=35.7]; Zinc-finger double domain [PF13465.8, score=26.9]; Putative actin-like family [PF17003.7, score=26.3]; C2H2-type zinc-finger domain [PF13909.8, score=23.1]} {Human: ENSG00000010818, HIVEP2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=157, Expect=1e-37]; ENSG00000127124, HIVEP3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=151, Expect=5e-36]; ENSG00000095951, HIVEP1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=150, Expect=9e-36]} {Mouse: ENSMUSG00000015501, Hivep2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=156, Expect=2e-37]; ENSMUSG00000021366, Hivep1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=151, Expect=4e-36]; ENSMUSG00000028634, Hivep3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=150, Expect=7e-36]} {Dmel: FBgn0003396, shn, schnurri, [RH, Score=141, Expect=3e-33]} {Celegans: WBGene00004862, sma-9, SMA-9 class IIb; SMAll, [RH, Score=120, Expect=9e-27]} {Smed: dd_Smed_v6_4708_0_1, dd_Smed_v6_4708_0_1, [RH, Score=114, Expect=3e-25]} {RNA1509_1757} {RNA1310_639} {RNA815_9962}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_22244

709

14.77

Mlig455_028474

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.304

HIVEP2

Mlig455_028474 {REF} {Length: 8097} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=77.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=48.1]; C2H2-type zinc finger [PF13894.8, score=47.9]; Zinc-finger of C2H2 type [PF12874.9, score=35.7]; Zinc-finger double domain [PF13465.8, score=26.9]; Putative actin-like family [PF17003.7, score=26.3]; C2H2-type zinc-finger domain [PF13909.8, score=23.1]} {Human: ENSG00000010818, HIVEP2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=157, Expect=1e-37]; ENSG00000127124, HIVEP3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=151, Expect=5e-36]; ENSG00000095951, HIVEP1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=150, Expect=9e-36]} {Mouse: ENSMUSG00000015501, Hivep2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=156, Expect=2e-37]; ENSMUSG00000021366, Hivep1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=151, Expect=4e-36]; ENSMUSG00000028634, Hivep3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=150, Expect=7e-36]} {Dmel: FBgn0003396, shn, schnurri, [RH, Score=141, Expect=3e-33]} {Celegans: WBGene00004862, sma-9, SMA-9 class IIb; SMAll, [RH, Score=120, Expect=9e-27]} {Smed: dd_Smed_v6_4708_0_1, dd_Smed_v6_4708_0_1, [RH, Score=114, Expect=3e-25]} {RNA1509_1757} {RNA1310_639} {RNA815_9962}

Cumulative graph for MligTC455_22244

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.1	4.219	0.28136	0.93219
RegionR2	0.656	4.219	0.08096	0.34873
RegionR3	-0.553	4.219	0.09307	0.53725
RegionR4	-0.472	4.219	0.17384	0.43923
RegionR5	0.268	4.219	0.30199	0.63779
RegionR6	0.104	4.219	0.74018	1.00000
RegionR7	0.5	4.219	0.23615	0.86042
RegionR8	0.597	4.219	0.26865	0.89179

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-6.42	4.219	0.15437	0.89657
RegenerationR2	0.042	4.219	0.87410	1.00000
RegenerationR3	0.498	4.219	0.13378	0.55712
RegenerationR4	0.059	4.219	0.85174	1.00000
RegenerationR5	-0.212	4.219	0.42501	0.81444
RegenerationR6	0.587	4.219	0.05725	0.29990
RegenerationBL	-0.77	4.219	0.10245	0.37728
RegenerationTP	-0.693	4.219	0.15635	0.58410

Genes with expression patterns similar to MligTC455_22244

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_22244	709	14.77	Mlig455_028474	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.304	HIVEP2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_028474 {REF} {Length: 8097} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=77.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=48.1]; C2H2-type zinc finger [PF13894.8, score=47.9]; Zinc-finger of C2H2 type [PF12874.9, score=35.7]; Zinc-finger double domain [PF13465.8, score=26.9]; Putative actin-like family [PF17003.7, score=26.3]; C2H2-type zinc-finger domain [PF13909.8, score=23.1]} {Human: ENSG00000010818, HIVEP2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=157, Expect=1e-37]; ENSG00000127124, HIVEP3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=151, Expect=5e-36]; ENSG00000095951, HIVEP1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=150, Expect=9e-36]} {Mouse: ENSMUSG00000015501, Hivep2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=156, Expect=2e-37]; ENSMUSG00000021366, Hivep1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=151, Expect=4e-36]; ENSMUSG00000028634, Hivep3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=150, Expect=7e-36]} {Dmel: FBgn0003396, shn, schnurri, [RH, Score=141, Expect=3e-33]} {Celegans: WBGene00004862, sma-9, SMA-9 class IIb; SMAll, [RH, Score=120, Expect=9e-27]} {Smed: dd_Smed_v6_4708_0_1, dd_Smed_v6_4708_0_1, [RH, Score=114, Expect=3e-25]} {RNA1509_1757} {RNA1310_639} {RNA815_9962}
2.	MligTC455_22245	602	12.55	Mlig455_028498	Neo: - Age: -	HIVEP2	5.654	0.843	0.952	0.958	0.987	0.974	0.940	Mlig455_028498 {REF} {Length: 5628} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=73.9]; C2H2-type zinc finger [PF13894.8, score=48.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=48.2]; Zinc-finger of C2H2 type [PF12874.9, score=36.2]; Zinc-finger double domain [PF13465.8, score=27.0]; Putative actin-like family [PF17003.7, score=25.9]; C2H2-type zinc-finger domain [PF13909.8, score=23.7]} {Human: ENSG00000010818, HIVEP2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=157, Expect=1e-37]; ENSG00000127124, HIVEP3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=151, Expect=6e-36]; ENSG00000095951, HIVEP1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=150, Expect=9e-36]} {Mouse: ENSMUSG00000015501, Hivep2, human immunodeficiency virus type I enhancer binding protein 2, [RH, Score=155, Expect=2e-37]; ENSMUSG00000021366, Hivep1, human immunodeficiency virus type I enhancer binding protein 1, [RH, Score=151, Expect=3e-36]; ENSMUSG00000028634, Hivep3, human immunodeficiency virus type I enhancer binding protein 3, [RH, Score=150, Expect=8e-36]} {Dmel: FBgn0003396, shn, schnurri, [RH, Score=141, Expect=3e-33]} {Celegans: WBGene00004862, sma-9, SMA-9 class IIb; SMAll, [RH, Score=120, Expect=8e-27]} {Smed: dd_Smed_v6_4708_0_1, dd_Smed_v6_4708_0_1, [RH, Score=114, Expect=3e-25]} {RNA1509_1757} {RNA1310_639} {RNA815_9962}
3.	MligTC455_33712	444	9.24	Mlig455_024601	Neo: - Age: -	BRAF	0.959	-	-	-	-	0.959	-	Mlig455_024601 {REF} {Length: 4091} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=190.6]; Protein kinase domain [PF00069.27, score=172.0]; Raf-like Ras-binding domain [PF02196.17, score=52.2]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=24.1]; Phosphotransferase enzyme family [PF01636.25, score=22.3]; Fungal protein kinase [PF17667.3, score=19.8]} {Human: ENSG00000157764, BRAF, B-Raf proto-oncogene, serine/threonine kinase, [Score=382, Expect=3e-121]; ENSG00000132155, RAF1, Raf-1 proto-oncogene, serine/threonine kinase, [Score=365, Expect=9e-118]} {Mouse: ENSMUSG00000002413, Braf, Braf transforming gene, [Score=381, Expect=2e-121]; ENSMUSG00000000441, Raf1, v-raf-leukemia viral oncogene 1, [Score=368, Expect=1e-117]} {Dmel: FBgn0003079, Raf, Raf oncogene, [RH, Score=373, Expect=1e-118]} {Celegans: WBGene00003030, lin-45, Raf homolog serine/threonine-protein kinase, [RH, Score=326, Expect=5e-100]} {Smed: dd_Smed_v6_10148_0_1, dd_Smed_v6_10148_0_1, [RH, Score=375, Expect=2e-119]} {RNA1509_20080} {RNA1310_8500, RNA1509_20080} {RNA1509_20080, RNA815_9141}
4.	MligTC455_24914	779	16.22	Mlig455_032658	Neo: - Age: Up-Down-Up	HECTD1	0.958	-	-	-	-	0.958	-	Mlig455_032658 {REF} {Length: 7397} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=218.1]; Basic tilted helix bundle domain [PF18410.3, score=41.8]; Mib_herc2 [PF06701.15, score=33.7]; Sad1 / UNC-like C-terminal [PF07738.15, score=26.0]} {Human: ENSG00000092148, HECTD1, HECT domain E3 ubiquitin protein ligase 1, [RH, Score=568, Expect=0.0]} {Mouse: ENSMUSG00000035247, Hectd1, HECT domain E3 ubiquitin protein ligase 1, [Score=572, Expect=4e-171]} {Dmel: FBgn0032208, Ufd4, Ubiquitin fusion-degradation 4-like, [RH, Score=437, Expect=5e-126]} {Celegans: WBGene00016405, hecd-1, HECtD1 ubiquitin ligase homolog, [RH, Score=419, Expect=3e-120]} {Smed: dd_Smed_v6_2824_0_1, dd_Smed_v6_2824_0_1, [Score=400, Expect=4e-114]} {RNA1509_31203, RNA1509_37314, RNA1509_48176, RNA1509_52878, RNA1509_58132, RNA1509_8379} {RNA1310_217, RNA1509_31203, RNA1509_37314, RNA1509_48176, RNA1509_52878, RNA1509_58132, RNA1509_8379} {RNA1509_31203, RNA1509_37314, RNA1509_48176, RNA1509_52878, RNA1509_58132, RNA1509_8379, RNA815_1993.1}