M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22250

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22250 2844 59.24 Mlig455_059160, Mlig455_059161, Mlig455_059163, Mlig455_065530

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.523

Region-enriched R4: 1.007/0.01360

 PPP1R3A

Mlig455_059160 {REF} {Length: 1009} {NoTransDecoderORF} {RNA1509_55625} {RNA1310_8151.3} {RNA815_3914.1}

Mlig455_059161 {REF} {Length: 1362} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=41.3]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=53.1, Expect=3e-09]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [Score=53.5, Expect=1e-09]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=43.5, Expect=4e-06]} {RNA1509_58249, RNA1509_8463} {RNA1310_9014.1, RNA1509_58249} {RNA1509_58249, RNA815_3914.1}

Mlig455_059163 {REF} {Length: 879} {RNA1509_55625} {RNA1310_8151.3} {RNA815_3914.1}

Mlig455_065530 {REF} {Length: 2909} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=81.1]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=41.2]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=92.8, Expect=4e-20]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [Score=92.8, Expect=2e-20]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=90.9, Expect=6e-20]} {Celegans: WBGene00016987, CC8.2, Protein phosphatase 1 regulatory subunit, [RH, Score=76.6, Expect=9e-16]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=99.8, Expect=3e-24]} {RNA1509_22133} {RNA1310_9014.1} {RNA815_3914.1}

Cumulative graph for MligTC455_22250

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.253 6.107 0.06988 0.59288
RegionR2 0.734 6.107 0.03341 0.20879
RegionR3 0.172 6.107 0.55240 1.00000
RegionR4 1.007 6.107 0.00141 0.01360
RegionR5 -0.913 6.107 0.00152 0.01414
RegionR6 -0.178 6.107 0.54032 1.00000
RegionR7 0.195 6.107 0.53909 1.00000
RegionR8 0.237 6.107 0.51891 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.264 6.107 0.15007 0.89129
RegenerationR2 0.264 6.107 0.41427 0.82327
RegenerationR3 0.434 6.107 0.21583 0.65226
RegenerationR4 -0.861 6.107 0.01522 0.19314
RegenerationR5 0.197 6.107 0.57173 0.89655
RegenerationR6 0.146 6.107 0.68199 0.91538
RegenerationBL -0.084 6.107 0.81561 1.00000
RegenerationTP -0.191 6.107 0.62313 0.97404


Genes with expression patterns similar to MligTC455_22250

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22250 2844 59.24 Mlig455_059160, Mlig455_059161, Mlig455_059163, Mlig455_065530

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.523

Region-enriched R4: 1.007/0.01360

 PPP1R3A 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_059160 {REF} {Length: 1009} {NoTransDecoderORF} {RNA1509_55625} {RNA1310_8151.3} {RNA815_3914.1}

Mlig455_059161 {REF} {Length: 1362} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=41.3]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=53.1, Expect=3e-09]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [Score=53.5, Expect=1e-09]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=43.5, Expect=4e-06]} {RNA1509_58249, RNA1509_8463} {RNA1310_9014.1, RNA1509_58249} {RNA1509_58249, RNA815_3914.1}

Mlig455_059163 {REF} {Length: 879} {RNA1509_55625} {RNA1310_8151.3} {RNA815_3914.1}

Mlig455_065530 {REF} {Length: 2909} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=81.1]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=41.2]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=92.8, Expect=4e-20]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [Score=92.8, Expect=2e-20]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=90.9, Expect=6e-20]} {Celegans: WBGene00016987, CC8.2, Protein phosphatase 1 regulatory subunit, [RH, Score=76.6, Expect=9e-16]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=99.8, Expect=3e-24]} {RNA1509_22133} {RNA1310_9014.1} {RNA815_3914.1}
2. MligTC455_22249 1541 32.1 Mlig455_059169

Neo: -

Age: logFC(26M/2M)=-0.196

 PPP1R3A 5.883 0.989 0.983 0.965 0.986 0.963 0.997 Mlig455_059169 {REF} {Length: 3756} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=80.8]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=40.9]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=91.3, Expect=2e-19]; ENSG00000132825, PPP1R3D, protein phosphatase 1 regulatory subunit 3D, [Score=87.4, Expect=5e-19]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [RH, Score=103, Expect=2e-23]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=110, Expect=3e-26]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=82.0, Expect=3e-17]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=139, Expect=1e-38]} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1310_9014.1, RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463, RNA815_3914.1}
3. MligTC455_43176 1391 28.98 Mlig455_031202

Neo: -

Age: -

 1.812 - - - 0.959 - 0.853 Mlig455_031202 {REF} {Length: 1602} {tRNA: Val(CAC),pseudo, score=27.7} {RNA1509_5906} {RNA1310_10573} {RNA815_3643}
4. MligTC455_43175 1395 29.07 Mlig455_031201

Neo: -

Age: logFC(26M/2M)=-0.710

 CAPN5 1.81 - - - 0.958 - 0.852 Mlig455_031201 {REF} {Length: 2222} {Pfam: Calpain family cysteine protease [PF00648.23, score=181.2]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=190, Expect=5e-52]; ENSG00000203697, CAPN8, calpain 8, [Score=182, Expect=6e-49]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=187, Expect=6e-51]; ENSMUSG00000038599, Capn8, calpain 8, [Score=186, Expect=3e-50]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=179, Expect=9e-49]} {Celegans: WBGene00000545, clp-4, CaLPain family, [Score=171, Expect=2e-45]} {Smed: dd_Smed_v6_1971_0_3, dd_Smed_v6_1971_0_3, [Score=166, Expect=1e-43]} {RNA1509_5906} {RNA1310_10573, RNA1509_5906} {RNA1509_5906, RNA815_3643}
5. MligTC455_27708 1033 21.52 Mlig455_058740

Neo: -

Age: Down-Down-Up

 TCTN1 1.785 - - - 0.951 - 0.834 Mlig455_058740 {REF} {Length: 4264} {Pfam: Protein of unknown function (DUF1619) [PF07773.13, score=180.3]} {Human: ENSG00000204852, TCTN1, tectonic family member 1, [RH, Score=140, Expect=1e-34]} {Mouse: ENSMUSG00000038593, Tctn1, tectonic family member 1, [RH, Score=128, Expect=8e-31]} {Smed: dd_Smed_v6_14210_0_1, dd_Smed_v6_14210_0_1, [Score=82.4, Expect=2e-16]} {RNA1509_21328, RNA1509_2978, RNA1509_56923, RNA1509_7408} {RNA1310_313, RNA1509_2978, RNA1509_56923, RNA1509_7408} {RNA1509_2978, RNA1509_56923, RNA1509_7408, RNA815_1107}
6. MligTC455_32956 1141 23.76 Mlig455_051391

Neo: -

Age: -

 PNPLA7 1.748 - - - 0.789 - 0.959 Mlig455_051391 {REF} {Length: 5298} {TRANSSPLICED} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=139.3]; Patatin-like phospholipase [PF01734.24, score=78.2]} {Human: ENSG00000130653, PNPLA7, patatin like phospholipase domain containing 7, [RH, Score=926, Expect=0.0]; ENSG00000032444, PNPLA6, patatin like phospholipase domain containing 6, [RH, Score=894, Expect=0.0]} {Mouse: ENSMUSG00000036833, Pnpla7, patatin-like phospholipase domain containing 7, [RH, Score=911, Expect=0.0]} {Dmel: FBgn0003656, sws, swiss cheese, [RH, Score=823, Expect=0.0]} {Celegans: WBGene00022718, ZK370.4, Uncharacterized NTE family protein ZK370.4, [RH, Score=591, Expect=0.0]} {Smed: dd_Smed_v6_11184_0_1, dd_Smed_v6_11184_0_1, [RH, Score=827, Expect=0.0]} {RNA1509_28533, RNA1509_4301, RNA1509_9455} {RNA1310_948.1, RNA1509_28533, RNA1509_4301, RNA1509_9455} {RNA1509_28533, RNA1509_4301, RNA1509_9455, RNA815_235.1}
7. MligTC455_32957 1141 23.76 Mlig455_070605

Neo: -

Age: -

 PNPLA6 1.747 - - - 0.787 - 0.960 Mlig455_070605 {REF} {Length: 2477} {Pfam: Patatin-like phospholipase [PF01734.24, score=81.3]} {Human: ENSG00000032444, PNPLA6, patatin like phospholipase domain containing 6, [Score=425, Expect=6e-135]; ENSG00000130653, PNPLA7, patatin like phospholipase domain containing 7, [Score=404, Expect=4e-127]} {Mouse: ENSMUSG00000004565, Pnpla6, patatin-like phospholipase domain containing 6, [Score=421, Expect=9e-134]; ENSMUSG00000036833, Pnpla7, patatin-like phospholipase domain containing 7, [Score=405, Expect=1e-127]} {Dmel: FBgn0003656, sws, swiss cheese, [Score=393, Expect=8e-123]} {Celegans: WBGene00022718, ZK370.4, Uncharacterized NTE family protein ZK370.4, [Score=338, Expect=2e-103]} {Smed: dd_Smed_v6_11184_0_2, dd_Smed_v6_11184_0_2, [Score=439, Expect=3e-140]} {RNA1509_9455} {RNA1310_948.1} {RNA815_235.1}
8. MligTC455_27796 664 13.84 Mlig455_005664

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.450

 HELZ2 1.744 - - - 0.955 - 0.789 Mlig455_005664 {REF} {Length: 8120} {Pfam: RNB domain [PF00773.21, score=158.5]; AAA domain [PF13086.8, score=134.0]; AAA domain [PF13087.8, score=128.8]; AAA domain [PF13604.8, score=26.8]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=21.9]; UvrD-like helicase C-terminal domain [PF13361.8, score=19.7]; UvrD-like helicase C-terminal domain [PF13538.8, score=19.6]} {Human: ENSG00000130589, HELZ2, helicase with zinc finger 2, [Score=148, Expect=6e-35]} {Mouse: ENSMUSG00000027580, Helz2, helicase with zinc finger 2, transcriptional coactivator, [Score=146, Expect=3e-34]} {Dmel: FBgn0039183, Dis3, [Score=110, Expect=8e-24]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=103, Expect=8e-22]} {Smed: dd_Smed_v6_8176_0_1, dd_Smed_v6_8176_0_1, [RH, Score=326, Expect=7e-90]} {RNA1509_18632} {RNA1310_275} {RNA815_982.1}
9. MligTC455_20230 1282 26.71 Mlig455_003493, Mlig455_015562

Neo: -

Age: logFC(26M/2M)=-0.236

 FAM227A, FAM227B 0.963 - - - 0.963 - -

Mlig455_003493 {REF} {Length: 2231} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.0]} {Human: ENSG00000184949, FAM227A, family with sequence similarity 227 member A, [Score=111, Expect=2e-25]} {Mouse: ENSMUSG00000042564, Fam227a, family with sequence similarity 227, member A, [RH, Score=96.7, Expect=8e-21]; ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=93.6, Expect=6e-20]} {Smed: dd_Smed_v6_15102_0_3, dd_Smed_v6_15102_0_3, [Score=157, Expect=3e-42]} {RNA1509_44428} {RNA1310_6983.2} {RNA815_5876}

Mlig455_015562 {REF} {Length: 2171} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.7]} {Human: ENSG00000166262, FAM227B, family with sequence similarity 227 member B, [RH, Score=107, Expect=2e-24]} {Mouse: ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=98.6, Expect=1e-21]} {Smed: dd_Smed_v6_15102_0_7, dd_Smed_v6_15102_0_7, [Score=178, Expect=5e-50]} {RNA1509_58462} {RNA1310_11701} {RNA815_12354}
10. MligTC455_15758 454 9.46 Mlig455_008494

Neo: -

Age: -

 STPG1 0.962 - - - 0.962 - - Mlig455_008494 {REF} {Length: 1348} {TRANSSPLICED} {Pfam: Sperm-tail PG-rich repeat [PF07004.14, score=32.8]} {Human: ENSG00000001460, STPG1, sperm tail PG-rich repeat containing 1, [RH, Score=115, Expect=5e-29]} {Mouse: ENSMUSG00000028801, Stpg1, sperm tail PG rich repeat containing 1, [RH, Score=128, Expect=9e-34]} {Smed: dd_Smed_v6_13235_0_1, dd_Smed_v6_13235_0_1, [RH, Score=163, Expect=5e-47]} {RNA1509_25088, RNA1509_50308} {RNA1310_25692.1, RNA1509_25088, RNA1509_50308} {RNA1509_25088, RNA1509_50308, RNA815_26183}
11. MligTC455_52884 1256 26.18 Mlig455_039238, Mlig455_053902

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.603

 LRRC6 0.959 - - - 0.959 - -

Mlig455_039238 {REF} {Length: 1660} {TRANSSPLICED} {Pfam: Leucine-rich repeat [PF14580.8, score=55.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=45.3]; Leucine rich repeat [PF13855.8, score=33.7]} {Human: ENSG00000129295, LRRC6, leucine rich repeat containing 6, [RH, Score=375, Expect=2e-126]} {Mouse: ENSMUSG00000022375, Lrrc6, leucine rich repeat containing 6 (testis), [RH, Score=388, Expect=3e-131]} {Dmel: FBgn0014395, tilB, touch insensitive larva B, [RH, Score=326, Expect=2e-108]} {Celegans: WBGene00011637, sds-22, Protein phosphatase 1 regulatory subunit SDS22 homolog, [Score=56.6, Expect=1e-08]} {Smed: dd_Smed_v6_10124_0_1, dd_Smed_v6_10124_0_1, [RH, Score=451, Expect=5e-157]} {RNA1509_19577} {RNA1310_13541.1} {RNA815_15351}

Mlig455_053902 {REF} {Length: 1689} {Pfam: Leucine-rich repeat [PF14580.8, score=55.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=45.3]; Leucine rich repeat [PF13855.8, score=33.7]} {Human: ENSG00000129295, LRRC6, leucine rich repeat containing 6, [RH, Score=375, Expect=2e-126]} {Mouse: ENSMUSG00000022375, Lrrc6, leucine rich repeat containing 6 (testis), [RH, Score=388, Expect=3e-131]} {Dmel: FBgn0014395, tilB, touch insensitive larva B, [RH, Score=326, Expect=2e-108]} {Celegans: WBGene00011637, sds-22, Protein phosphatase 1 regulatory subunit SDS22 homolog, [Score=56.6, Expect=1e-08]} {Smed: dd_Smed_v6_10124_0_1, dd_Smed_v6_10124_0_1, [RH, Score=451, Expect=5e-157]} {RNA1509_19577} {RNA1310_13541.1} {RNA815_15351}
12. MligTC455_21032 654 13.63 Mlig455_054554, Mlig455_066337

Neo: -

Age: -

 0.957 - - - - - 0.957

Mlig455_054554 {REF} {Length: 652} {NoTransDecoderORF} {RNA1509_36765} {RNA1310_8260.1} {RNA815_20588}

Mlig455_066337 {REF} {Length: 463} {NoTransDecoderORF} {RNA1509_36765} {RNA1310_8260.1} {RNA815_20588}
13. MligTC455_44021 681 14.19 Mlig455_027402

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.474

 STYXL1 0.953 - - - 0.953 - - Mlig455_027402 {REF} {Length: 1736} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=65.4]; Rhodanese-like domain [PF00581.22, score=29.2]} {Human: ENSG00000127952, STYXL1, serine/threonine/tyrosine interacting like 1, [RH, Score=196, Expect=2e-60]} {Mouse: ENSMUSG00000019178, Styxl1, serine/threonine/tyrosine interacting-like 1, [RH, Score=188, Expect=1e-57]} {Dmel: FBgn0039742, CG15528, [Score=52.8, Expect=6e-08]} {Celegans: WBGene00017428, F13D11.3, [Score=57.8, Expect=5e-10]} {Smed: dd_Smed_v6_11358_0_1, dd_Smed_v6_11358_0_1, [RH, Score=251, Expect=8e-83]} {RNA1509_4392} {RNA1310_10767.2, RNA1509_4392} {RNA1509_4392, RNA815_8325.1}
14. MligTC455_37004 380 7.91 Mlig455_061585

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_061585 {REF} {Length: 4759} {TRANSSPLICED} {Smed: dd_Smed_v6_6723_0_1, dd_Smed_v6_6723_0_1, [Score=290, Expect=2e-89]} {RNA1509_27820} {RNA1310_12455, RNA1509_27820} {RNA1509_27820, RNA815_17018}
15. MligTC455_42421 451 9.4 Mlig455_014113

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_014113 {REF} {Length: 3365} {RNA1509_22432} {RNA1310_7691.1, RNA1509_22432} {RNA1509_22432, RNA815_2712.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA