M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22249

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22249 1541 32.10 Mlig455_059169

Neo: -

Age: logFC(26M/2M)=-0.196

 PPP1R3A Mlig455_059169 {REF} {Length: 3756} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=80.8]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=40.9]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=91.3, Expect=2e-19]; ENSG00000132825, PPP1R3D, protein phosphatase 1 regulatory subunit 3D, [Score=87.4, Expect=5e-19]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [RH, Score=103, Expect=2e-23]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=110, Expect=3e-26]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=82.0, Expect=3e-17]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=139, Expect=1e-38]} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1310_9014.1, RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463, RNA815_3914.1}

Cumulative graph for MligTC455_22249

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.99 5.278 0.20261 0.84104
RegionR2 0.755 5.278 0.02064 0.15635
RegionR3 0.144 5.278 0.59468 1.00000
RegionR4 0.833 5.278 0.00510 0.03683
RegionR5 -0.875 5.278 0.00109 0.01090
RegionR6 -0.154 5.278 0.58001 1.00000
RegionR7 0.115 5.278 0.73641 1.00000
RegionR8 0.172 5.278 0.67905 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.868 5.278 0.40828 1.00000
RegenerationR2 0.229 5.278 0.40027 0.81448
RegenerationR3 0.331 5.278 0.28582 0.71791
RegenerationR4 -0.817 5.278 0.00805 0.13287
RegenerationR5 0.149 5.278 0.62825 0.92175
RegenerationR6 0.121 5.278 0.70549 0.92771
RegenerationBL -0.192 5.278 0.61432 0.95858
RegenerationTP -0.182 5.278 0.64614 0.98677


Genes with expression patterns similar to MligTC455_22249

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22249 1541 32.1 Mlig455_059169

Neo: -

Age: logFC(26M/2M)=-0.196

 PPP1R3A 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_059169 {REF} {Length: 3756} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=80.8]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=40.9]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=91.3, Expect=2e-19]; ENSG00000132825, PPP1R3D, protein phosphatase 1 regulatory subunit 3D, [Score=87.4, Expect=5e-19]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [RH, Score=103, Expect=2e-23]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=110, Expect=3e-26]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=82.0, Expect=3e-17]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=139, Expect=1e-38]} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1310_9014.1, RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463} {RNA1509_14688, RNA1509_21791, RNA1509_22133, RNA1509_4760, RNA1509_55625, RNA1509_8463, RNA815_3914.1}
2. MligTC455_22250 2844 59.24 Mlig455_059160, Mlig455_059161, Mlig455_059163, Mlig455_065530

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.523

Region-enriched R4: 1.007/0.01360

 PPP1R3A 5.883 0.989 0.983 0.965 0.986 0.963 0.997

Mlig455_059160 {REF} {Length: 1009} {NoTransDecoderORF} {RNA1509_55625} {RNA1310_8151.3} {RNA815_3914.1}

Mlig455_059161 {REF} {Length: 1362} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=41.3]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=53.1, Expect=3e-09]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [Score=53.5, Expect=1e-09]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=43.5, Expect=4e-06]} {RNA1509_58249, RNA1509_8463} {RNA1310_9014.1, RNA1509_58249} {RNA1509_58249, RNA815_3914.1}

Mlig455_059163 {REF} {Length: 879} {RNA1509_55625} {RNA1310_8151.3} {RNA815_3914.1}

Mlig455_065530 {REF} {Length: 2909} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=81.1]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=41.2]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=92.8, Expect=4e-20]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [Score=92.8, Expect=2e-20]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=90.9, Expect=6e-20]} {Celegans: WBGene00016987, CC8.2, Protein phosphatase 1 regulatory subunit, [RH, Score=76.6, Expect=9e-16]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=99.8, Expect=3e-24]} {RNA1509_22133} {RNA1310_9014.1} {RNA815_3914.1}
3. MligTC455_46483 630 13.12 Mlig455_013942

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.370

 3.133 - - 0.738 0.964 0.711 0.720 Mlig455_013942 {REF} {Length: 3052} {RNA1509_5335} {RNA1310_5801.1, RNA1509_5335} {RNA1509_5335, RNA815_10251}
4. MligTC455_38803 3547 73.9 Mlig455_064495, Mlig455_064514, Mlig455_066056

Neo: -

Age: -

 PFKP 2.677 - - - 0.955 0.925 0.797

Mlig455_064495 {REF} {Length: 4264} {TRANSSPLICED} {Pfam: Phosphofructokinase [PF00365.22, score=623.4]} {Human: ENSG00000067057, PFKP, phosphofructokinase, platelet, [RH, Score=851, Expect=0.0]; ENSG00000141959, PFKL, phosphofructokinase, liver type, [RH, Score=849, Expect=0.0]; ENSG00000152556, PFKM, phosphofructokinase, muscle, [RH, Score=833, Expect=0.0]} {Mouse: ENSMUSG00000020277, Pfkl, phosphofructokinase, liver, B-type, [RH, Score=852, Expect=0.0]; ENSMUSG00000033065, Pfkm, phosphofructokinase, muscle, [RH, Score=836, Expect=0.0]; ENSMUSG00000021196, Pfkp, phosphofructokinase, platelet, [RH, Score=835, Expect=0.0]} {Dmel: FBgn0003071, Pfk, Phosphofructokinase, [RH, Score=860, Expect=0.0]} {Celegans: WBGene00022199, pfk-1.1, ATP-dependent 6-phosphofructokinase 1, [RH, Score=827, Expect=0.0]} {Smed: dd_Smed_v6_1604_0_1, dd_Smed_v6_1604_0_1, [RH, Score=909, Expect=0.0]} {RNA1509_2362} {RNA1310_6048.2} {RNA815_2567}

Mlig455_064514 {REF} {Length: 4193} {TRANSSPLICED} {Pfam: Phosphofructokinase [PF00365.22, score=623.4]} {Human: ENSG00000067057, PFKP, phosphofructokinase, platelet, [RH, Score=852, Expect=0.0]; ENSG00000141959, PFKL, phosphofructokinase, liver type, [RH, Score=849, Expect=0.0]; ENSG00000152556, PFKM, phosphofructokinase, muscle, [RH, Score=833, Expect=0.0]} {Mouse: ENSMUSG00000020277, Pfkl, phosphofructokinase, liver, B-type, [RH, Score=853, Expect=0.0]; ENSMUSG00000033065, Pfkm, phosphofructokinase, muscle, [RH, Score=837, Expect=0.0]; ENSMUSG00000021196, Pfkp, phosphofructokinase, platelet, [RH, Score=835, Expect=0.0]} {Dmel: FBgn0003071, Pfk, Phosphofructokinase, [RH, Score=860, Expect=0.0]} {Celegans: WBGene00022199, pfk-1.1, ATP-dependent 6-phosphofructokinase 1, [RH, Score=827, Expect=0.0]} {Smed: dd_Smed_v6_1604_0_1, dd_Smed_v6_1604_0_1, [RH, Score=910, Expect=0.0]} {RNA1509_2362} {RNA1310_6048.2} {RNA815_2567}

Mlig455_066056 {REF} {Length: 4089} {TRANSSPLICED} {Pfam: Phosphofructokinase [PF00365.22, score=623.5]} {Human: ENSG00000067057, PFKP, phosphofructokinase, platelet, [RH, Score=852, Expect=0.0]; ENSG00000141959, PFKL, phosphofructokinase, liver type, [RH, Score=849, Expect=0.0]; ENSG00000152556, PFKM, phosphofructokinase, muscle, [RH, Score=833, Expect=0.0]} {Mouse: ENSMUSG00000020277, Pfkl, phosphofructokinase, liver, B-type, [RH, Score=852, Expect=0.0]; ENSMUSG00000033065, Pfkm, phosphofructokinase, muscle, [RH, Score=837, Expect=0.0]; ENSMUSG00000021196, Pfkp, phosphofructokinase, platelet, [RH, Score=834, Expect=0.0]} {Dmel: FBgn0003071, Pfk, Phosphofructokinase, [RH, Score=860, Expect=0.0]} {Celegans: WBGene00022199, pfk-1.1, ATP-dependent 6-phosphofructokinase 1, [RH, Score=827, Expect=0.0]} {Smed: dd_Smed_v6_1604_0_1, dd_Smed_v6_1604_0_1, [RH, Score=910, Expect=0.0]} {RNA1509_2362} {RNA1310_6048.2} {RNA815_2567}
5. MligTC455_38323 519 10.81 Mlig455_046289

Neo: -

Age: logFC(26M/2M)=-0.304

 MAP2 2.415 - - - 0.966 0.720 0.729 Mlig455_046289 {REF} {Length: 4653} {Pfam: Tau and MAP protein, tubulin-binding repeat [PF00418.21, score=106.9]} {Human: ENSG00000078018, MAP2, microtubule associated protein 2, [Score=87.8, Expect=4e-17]; ENSG00000186868, MAPT, microtubule associated protein tau, [Score=85.1, Expect=2e-16]; ENSG00000277956, MAPT, microtubule associated protein tau, [Score=85.1, Expect=2e-16]; ENSG00000276155, MAPT, microtubule associated protein tau, [Score=85.1, Expect=2e-16]} {Mouse: ENSMUSG00000015222, Map2, microtubule-associated protein 2, [Score=87.8, Expect=2e-17]; ENSMUSG00000018411, Mapt, microtubule-associated protein tau, [Score=85.1, Expect=4e-16]} {Dmel: FBgn0266579, tau, [Score=122, Expect=3e-30]} {Celegans: WBGene00004212, ptl-1, Microtubule-associated protein, [Score=113, Expect=4e-26]} {Smed: dd_Smed_v6_7133_0_2, dd_Smed_v6_7133_0_2, [Score=90.9, Expect=3e-19]} {RNA1509_27273} {RNA1310_7134} {RNA815_5806}
6. MligTC455_43175 1395 29.07 Mlig455_031201

Neo: -

Age: logFC(26M/2M)=-0.710

 CAPN5 1.804 - - - 0.968 - 0.836 Mlig455_031201 {REF} {Length: 2222} {Pfam: Calpain family cysteine protease [PF00648.23, score=181.2]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=190, Expect=5e-52]; ENSG00000203697, CAPN8, calpain 8, [Score=182, Expect=6e-49]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=187, Expect=6e-51]; ENSMUSG00000038599, Capn8, calpain 8, [Score=186, Expect=3e-50]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=179, Expect=9e-49]} {Celegans: WBGene00000545, clp-4, CaLPain family, [Score=171, Expect=2e-45]} {Smed: dd_Smed_v6_1971_0_3, dd_Smed_v6_1971_0_3, [Score=166, Expect=1e-43]} {RNA1509_5906} {RNA1310_10573, RNA1509_5906} {RNA1509_5906, RNA815_3643}
7. MligTC455_43176 1391 28.98 Mlig455_031202

Neo: -

Age: -

 1.804 - - - 0.969 - 0.835 Mlig455_031202 {REF} {Length: 1602} {tRNA: Val(CAC),pseudo, score=27.7} {RNA1509_5906} {RNA1310_10573} {RNA815_3643}
8. MligTC455_32956 1141 23.76 Mlig455_051391

Neo: -

Age: -

 PNPLA7 1.74 - - - 0.782 - 0.958 Mlig455_051391 {REF} {Length: 5298} {TRANSSPLICED} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=139.3]; Patatin-like phospholipase [PF01734.24, score=78.2]} {Human: ENSG00000130653, PNPLA7, patatin like phospholipase domain containing 7, [RH, Score=926, Expect=0.0]; ENSG00000032444, PNPLA6, patatin like phospholipase domain containing 6, [RH, Score=894, Expect=0.0]} {Mouse: ENSMUSG00000036833, Pnpla7, patatin-like phospholipase domain containing 7, [RH, Score=911, Expect=0.0]} {Dmel: FBgn0003656, sws, swiss cheese, [RH, Score=823, Expect=0.0]} {Celegans: WBGene00022718, ZK370.4, Uncharacterized NTE family protein ZK370.4, [RH, Score=591, Expect=0.0]} {Smed: dd_Smed_v6_11184_0_1, dd_Smed_v6_11184_0_1, [RH, Score=827, Expect=0.0]} {RNA1509_28533, RNA1509_4301, RNA1509_9455} {RNA1310_948.1, RNA1509_28533, RNA1509_4301, RNA1509_9455} {RNA1509_28533, RNA1509_4301, RNA1509_9455, RNA815_235.1}
9. MligTC455_32957 1141 23.76 Mlig455_070605

Neo: -

Age: -

 PNPLA6 1.738 - - - 0.780 - 0.958 Mlig455_070605 {REF} {Length: 2477} {Pfam: Patatin-like phospholipase [PF01734.24, score=81.3]} {Human: ENSG00000032444, PNPLA6, patatin like phospholipase domain containing 6, [Score=425, Expect=6e-135]; ENSG00000130653, PNPLA7, patatin like phospholipase domain containing 7, [Score=404, Expect=4e-127]} {Mouse: ENSMUSG00000004565, Pnpla6, patatin-like phospholipase domain containing 6, [Score=421, Expect=9e-134]; ENSMUSG00000036833, Pnpla7, patatin-like phospholipase domain containing 7, [Score=405, Expect=1e-127]} {Dmel: FBgn0003656, sws, swiss cheese, [Score=393, Expect=8e-123]} {Celegans: WBGene00022718, ZK370.4, Uncharacterized NTE family protein ZK370.4, [Score=338, Expect=2e-103]} {Smed: dd_Smed_v6_11184_0_2, dd_Smed_v6_11184_0_2, [Score=439, Expect=3e-140]} {RNA1509_9455} {RNA1310_948.1} {RNA815_235.1}
10. MligTC455_25322 530 11.05 Mlig455_016477

Neo: -

Age: logFC(26M/2M)=-0.329

 1.716 - - - 0.951 0.765 - Mlig455_016477 {REF} {Length: 3328} {Dmel: FBgn0263076, Klp54D, Kinesin-like protein at 54D, [Score=85.5, Expect=9e-17]} {Smed: dd_Smed_v6_45970_0_1, dd_Smed_v6_45970_0_1, [Score=49.3, Expect=2e-06]} {RNA1509_56505} {RNA1310_5922.1} {RNA815_12097}
11. MligTC455_37004 380 7.91 Mlig455_061585

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_061585 {REF} {Length: 4759} {TRANSSPLICED} {Smed: dd_Smed_v6_6723_0_1, dd_Smed_v6_6723_0_1, [Score=290, Expect=2e-89]} {RNA1509_27820} {RNA1310_12455, RNA1509_27820} {RNA1509_27820, RNA815_17018}
12. MligTC455_20230 1282 26.71 Mlig455_003493, Mlig455_015562

Neo: -

Age: logFC(26M/2M)=-0.236

 FAM227A, FAM227B 0.956 - - - 0.956 - -

Mlig455_003493 {REF} {Length: 2231} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.0]} {Human: ENSG00000184949, FAM227A, family with sequence similarity 227 member A, [Score=111, Expect=2e-25]} {Mouse: ENSMUSG00000042564, Fam227a, family with sequence similarity 227, member A, [RH, Score=96.7, Expect=8e-21]; ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=93.6, Expect=6e-20]} {Smed: dd_Smed_v6_15102_0_3, dd_Smed_v6_15102_0_3, [Score=157, Expect=3e-42]} {RNA1509_44428} {RNA1310_6983.2} {RNA815_5876}

Mlig455_015562 {REF} {Length: 2171} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.7]} {Human: ENSG00000166262, FAM227B, family with sequence similarity 227 member B, [RH, Score=107, Expect=2e-24]} {Mouse: ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=98.6, Expect=1e-21]} {Smed: dd_Smed_v6_15102_0_7, dd_Smed_v6_15102_0_7, [Score=178, Expect=5e-50]} {RNA1509_58462} {RNA1310_11701} {RNA815_12354}
13. MligTC455_44021 681 14.19 Mlig455_027402

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.474

 STYXL1 0.954 - - - 0.954 - - Mlig455_027402 {REF} {Length: 1736} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=65.4]; Rhodanese-like domain [PF00581.22, score=29.2]} {Human: ENSG00000127952, STYXL1, serine/threonine/tyrosine interacting like 1, [RH, Score=196, Expect=2e-60]} {Mouse: ENSMUSG00000019178, Styxl1, serine/threonine/tyrosine interacting-like 1, [RH, Score=188, Expect=1e-57]} {Dmel: FBgn0039742, CG15528, [Score=52.8, Expect=6e-08]} {Celegans: WBGene00017428, F13D11.3, [Score=57.8, Expect=5e-10]} {Smed: dd_Smed_v6_11358_0_1, dd_Smed_v6_11358_0_1, [RH, Score=251, Expect=8e-83]} {RNA1509_4392} {RNA1310_10767.2, RNA1509_4392} {RNA1509_4392, RNA815_8325.1}
14. MligTC455_35888 1247 25.98 Mlig455_000163

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_000163 {REF} {Length: 2488} {Pfam: Domain of unknown function (DUF4749) [PF15936.7, score=35.2]} {RNA1509_22539} {RNA1310_6784} {RNA815_1546.1}
15. MligTC455_21032 654 13.63 Mlig455_054554, Mlig455_066337

Neo: -

Age: -

 0.951 - - - - - 0.951

Mlig455_054554 {REF} {Length: 652} {NoTransDecoderORF} {RNA1509_36765} {RNA1310_8260.1} {RNA815_20588}

Mlig455_066337 {REF} {Length: 463} {NoTransDecoderORF} {RNA1509_36765} {RNA1310_8260.1} {RNA815_20588}
16. MligTC455_42672 245 5.1 Mlig455_017083

Neo: -

Age: -

 ZDHHC2 0.951 - - - - - 0.951 Mlig455_017083 {REF} {Length: 2004} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=116.3]} {Human: ENSG00000104219, ZDHHC2, zinc finger DHHC-type containing 2, [RH, Score=283, Expect=5e-93]} {Mouse: ENSMUSG00000039470, Zdhhc2, zinc finger, DHHC domain containing 2, [RH, Score=283, Expect=3e-93]; ENSMUSG00000021969, Zdhhc20, zinc finger, DHHC domain containing 20, [RH, Score=270, Expect=3e-88]} {Dmel: FBgn0033474, CG1407, [RH, Score=263, Expect=2e-84]} {Celegans: WBGene00014075, dhhc-4, Zinc finger DHHC domain-containing protein 4, [RH, Score=197, Expect=7e-60]} {Smed: dd_Smed_v6_6233_0_1, dd_Smed_v6_6233_0_1, [Score=241, Expect=4e-78]} {RNA1509_12209} {RNA1310_4498.1, RNA1509_12209} {RNA1509_12209, RNA815_1649}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA