M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22539

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22539 720 15.00 Mlig455_002790

Neo: -

Age: -

 DEUP1 Mlig455_002790 {REF} {Length: 2579} {TRANSSPLICED} {Pfam: Centrosomal protein of 63 kDa [PF17045.7, score=99.4]; Fez1 [PF06818.17, score=22.1]; TPR/MLP1/MLP2-like protein [PF07926.14, score=21.0]; Hyaluronan mediated motility receptor N-terminal [PF15905.7, score=19.7]} {Human: ENSG00000165325, DEUP1, deuterosome assembly protein 1, [RH, Score=79.3, Expect=7e-15]} {Mouse: ENSMUSG00000039977, Deup1, deuterosome assembly protein 1, [RH, Score=80.1, Expect=2e-15]} {RNA1509_13150} {RNA1310_6993.1} {RNA815_10504}

Cumulative graph for MligTC455_22539

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.221 4.263 0.80962 1.00000
RegionR2 0.006 4.263 0.98727 1.00000
RegionR3 -0.174 4.263 0.64529 1.00000
RegionR4 0.93 4.263 0.02253 0.11091
RegionR5 0.257 4.263 0.43620 0.79626
RegionR6 0.21 4.263 0.57314 1.00000
RegionR7 -0.377 4.263 0.45883 1.00000
RegionR8 -1.073 4.263 0.12781 0.65699

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.753 4.263 0.03088 0.63108
RegenerationR2 -0.025 4.263 0.94677 1.00000
RegenerationR3 0.271 4.263 0.51596 0.86453
RegenerationR4 -0.767 4.263 0.06471 0.40583
RegenerationR5 0.253 4.263 0.50137 0.85914
RegenerationR6 0.319 4.263 0.42896 0.75746
RegenerationBL 0.218 4.263 0.68723 1.00000
RegenerationTP 0.05 4.263 0.93624 1.00000


Genes with expression patterns similar to MligTC455_22539

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22539 720 15 Mlig455_002790

Neo: -

Age: -

 DEUP1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002790 {REF} {Length: 2579} {TRANSSPLICED} {Pfam: Centrosomal protein of 63 kDa [PF17045.7, score=99.4]; Fez1 [PF06818.17, score=22.1]; TPR/MLP1/MLP2-like protein [PF07926.14, score=21.0]; Hyaluronan mediated motility receptor N-terminal [PF15905.7, score=19.7]} {Human: ENSG00000165325, DEUP1, deuterosome assembly protein 1, [RH, Score=79.3, Expect=7e-15]} {Mouse: ENSMUSG00000039977, Deup1, deuterosome assembly protein 1, [RH, Score=80.1, Expect=2e-15]} {RNA1509_13150} {RNA1310_6993.1} {RNA815_10504}
2. MligTC455_25605 1172 24.43 Mlig455_002017, Mlig455_002107, Mlig455_002216

Neo: -

Age: -

 VPS53 0.968 - - - - - 0.968

Mlig455_002017 {REF} {Length: 3893} {TRANSSPLICED} {Pfam: Vps53-like, N-terminal [PF04100.14, score=313.6]} {Human: ENSG00000141252, VPS53, VPS53, GARP complex subunit, [RH, Score=664, Expect=0.0]; ENSG00000283883, VPS53, VPS53, GARP complex subunit, [RH, Score=664, Expect=0.0]} {Mouse: ENSMUSG00000017288, Vps53, VPS53 GARP complex subunit, [RH, Score=668, Expect=0.0]} {Dmel: FBgn0031598, Vps53, Vacuolar protein sorting 53, [RH, Score=622, Expect=0.0]} {Celegans: WBGene00011502, vps-53, Vacuolar protein sorting-associated protein 53 homolog, [RH, Score=447, Expect=9e-145]} {Smed: dd_Smed_v6_6069_0_1, dd_Smed_v6_6069_0_1, [RH, Score=543, Expect=1e-180]} {RNA1509_25620, RNA1509_36710, RNA1509_54508} {RNA1310_3890, RNA1509_36710, RNA1509_54508} {RNA1509_36710, RNA1509_54508, RNA815_1881}

Mlig455_002107 {REF} {Length: 3499} {TRANSSPLICED} {Pfam: Vps53-like, N-terminal [PF04100.14, score=314.4]} {Human: ENSG00000141252, VPS53, VPS53, GARP complex subunit, [RH, Score=660, Expect=0.0]; ENSG00000283883, VPS53, VPS53, GARP complex subunit, [RH, Score=660, Expect=0.0]} {Mouse: ENSMUSG00000017288, Vps53, VPS53 GARP complex subunit, [RH, Score=664, Expect=0.0]} {Dmel: FBgn0031598, Vps53, Vacuolar protein sorting 53, [RH, Score=621, Expect=0.0]} {Celegans: WBGene00011502, vps-53, Vacuolar protein sorting-associated protein 53 homolog, [RH, Score=447, Expect=2e-144]} {Smed: dd_Smed_v6_6069_0_1, dd_Smed_v6_6069_0_1, [RH, Score=546, Expect=0.0]} {RNA1509_25620} {RNA1310_3890, RNA1509_25620} {RNA1509_25620, RNA815_1881}

Mlig455_002216 {REF} {Length: 3692} {TRANSSPLICED} {Pfam: Vps53-like, N-terminal [PF04100.14, score=314.4]} {Human: ENSG00000283883, VPS53, VPS53, GARP complex subunit, [RH, Score=660, Expect=0.0]; ENSG00000141252, VPS53, VPS53, GARP complex subunit, [RH, Score=660, Expect=0.0]} {Mouse: ENSMUSG00000017288, Vps53, VPS53 GARP complex subunit, [RH, Score=665, Expect=0.0]} {Dmel: FBgn0031598, Vps53, Vacuolar protein sorting 53, [RH, Score=620, Expect=0.0]} {Celegans: WBGene00011502, vps-53, Vacuolar protein sorting-associated protein 53 homolog, [RH, Score=447, Expect=2e-144]} {Smed: dd_Smed_v6_6069_0_1, dd_Smed_v6_6069_0_1, [RH, Score=546, Expect=0.0]} {RNA1509_24765, RNA1509_25620} {RNA1310_3890, RNA1509_24765} {RNA1509_24765, RNA815_1881}
3. MligTC455_24738 321 6.68 Mlig455_000536

Neo: Int S/G2/M

Age: -

 ANKRD17 0.963 - - - - 0.963 - Mlig455_000536 {REF} {Length: 7872} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=440.1]; Ankyrin repeats (many copies) [PF13637.8, score=343.1]; Ankyrin repeat [PF13606.8, score=326.9]; Ankyrin repeat [PF00023.32, score=325.7]; Ankyrin repeats (many copies) [PF13857.8, score=263.1]; KH domain [PF00013.31, score=64.2]; KH domain [PF13083.8, score=24.3]} {Human: ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [RH, Score=579, Expect=2e-169]; ENSG00000254996, ANKHD1-EIF4EBP3, ANKHD1-EIF4EBP3 readthrough, [RH, Score=578, Expect=1e-168]; ENSG00000131503, ANKHD1, ankyrin repeat and KH domain containing 1, [RH, Score=578, Expect=0.0]} {Mouse: ENSMUSG00000024483, Ankhd1, ankyrin repeat and KH domain containing 1, [RH, Score=578, Expect=4e-169]; ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [RH, Score=578, Expect=2e-169]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [RH, Score=583, Expect=9e-170]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [RH, Score=498, Expect=9e-148]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [RH, Score=513, Expect=9e-150]} {RNA1509_5961} {RNA1310_371} {RNA815_13478}
4. MligTC455_35484 317 6.6 Mlig455_060619

Neo: -

Age: -

 NR1D2 0.959 - - - - - 0.959 Mlig455_060619 {REF} {Length: 3452} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=79.3]} {Human: ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=87.0, Expect=3e-17]; ENSG00000069667, RORA, RAR related orphan receptor A, [Score=87.0, Expect=3e-17]; ENSG00000126351, THRA, thyroid hormone receptor alpha, [Score=85.1, Expect=7e-17]; ENSG00000143365, RORC, RAR related orphan receptor C, [Score=85.1, Expect=1e-16]; ENSG00000132170, PPARG, peroxisome proliferator activated receptor gamma, [Score=84.7, Expect=1e-16]; ENSG00000198963, RORB, RAR related orphan receptor B, [Score=83.6, Expect=3e-16]; ENSG00000126368, NR1D1, nuclear receptor subfamily 1 group D member 1, [Score=83.2, Expect=5e-16]; ENSG00000077092, RARB, retinoic acid receptor beta, [Score=82.8, Expect=4e-16]} {Mouse: ENSMUSG00000021775, Nr1d2, nuclear receptor subfamily 1, group D, member 2, [Score=87.0, Expect=2e-17]; ENSMUSG00000002250, Ppard, peroxisome proliferator activator receptor delta, [Score=87.0, Expect=1e-17]; ENSMUSG00000032238, Rora, RAR-related orphan receptor alpha, [Score=85.9, Expect=4e-17]; ENSMUSG00000020889, Nr1d1, nuclear receptor subfamily 1, group D, member 1, [Score=84.3, Expect=2e-16]; ENSMUSG00000000440, Pparg, peroxisome proliferator activated receptor gamma, [Score=84.3, Expect=1e-16]; ENSMUSG00000036192, Rorb, RAR-related orphan receptor beta, [Score=83.6, Expect=2e-16]; ENSMUSG00000028150, Rorc, RAR-related orphan receptor gamma, [Score=83.6, Expect=2e-16]; ENSMUSG00000017491, Rarb, retinoic acid receptor, beta, [Score=82.8, Expect=3e-16]; ENSMUSG00000058756, Thra, thyroid hormone receptor alpha, [Score=82.8, Expect=3e-16]} {Dmel: FBgn0000568, Eip75B, Ecdysone-induced protein 75B, [Score=87.8, Expect=1e-17]} {Celegans: WBGene00003675, nhr-85, Nuclear hormone receptor family member nhr-85, [Score=90.1, Expect=1e-18]} {Smed: dd_Smed_v6_9282_0_3, dd_Smed_v6_9282_0_3, [Score=94.7, Expect=5e-20]} {RNA1509_11965, RNA1509_23068} {RNA1310_8639, RNA1509_23068} {RNA1509_23068, RNA815_10556}
5. MligTC455_16784 1482 30.87 Mlig455_045891

Neo: Neoblast

Age: -

Regeneration-enriched R6: 1.382

 TIMM10 0.953 - - - - 0.953 - Mlig455_045891 {REF} {Length: 2072} {TRANSSPLICED} {Pfam: Tim10/DDP family zinc finger [PF02953.17, score=69.3]} {Human: ENSG00000134809, TIMM10, translocase of inner mitochondrial membrane 10, [RH, Score=88.2, Expect=1e-23]} {Mouse: ENSMUSG00000027076, Timm10, translocase of inner mitochondrial membrane 10, [RH, Score=88.2, Expect=7e-24]} {Dmel: FBgn0027360, Tim10, Translocase of inner membrane 10, [RH, Score=90.5, Expect=6e-25]} {Celegans: WBGene00006573, tin-10, Mitochondrial import inner membrane translocase subunit Tim10, [RH, Score=85.1, Expect=7e-23]} {Smed: dd_Smed_v6_1710_0_1, dd_Smed_v6_1710_0_1, [RH, Score=87.8, Expect=6e-24]} {RNA1509_15328, RNA1509_21842, RNA1509_24688, RNA1509_29092, RNA1509_29987, RNA1509_42814, RNA1509_46821} {RNA1310_45745, RNA1509_15328, RNA1509_21842, RNA1509_24688, RNA1509_29092, RNA1509_29987, RNA1509_42814, RNA1509_46821} {RNA1509_15328, RNA1509_21842, RNA1509_24688, RNA1509_29092, RNA1509_29987, RNA1509_42814, RNA1509_46821, RNA815_24837.1}
6. MligTC455_18916 2221 46.26 Mlig455_007248, Mlig455_007470

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.352

 BTF3 0.951 - - - - 0.951 -

Mlig455_007248 {REF} {Length: 1741} {Pfam: NAC domain [PF01849.20, score=86.2]} {Human: ENSG00000145741, BTF3, basic transcription factor 3, [RH, Score=176, Expect=2e-56]} {Mouse: ENSMUSG00000021660, Btf3, basic transcription factor 3, [RH, Score=176, Expect=1e-56]} {Dmel: FBgn0031264, CG11835, [Score=165, Expect=1e-47]} {Celegans: WBGene00002045, icd-1, Transcription factor BTF3 homolog, [Score=169, Expect=4e-54]} {Smed: dd_Smed_v6_358_0_1, dd_Smed_v6_358_0_1, [Score=174, Expect=4e-56]} {RNA1509_6036} {RNA1310_16961.1} {RNA815_12135.1}

Mlig455_007470 {REF} {Length: 1509} {TRANSSPLICED} {Pfam: NAC domain [PF01849.20, score=86.2]} {Human: ENSG00000145741, BTF3, basic transcription factor 3, [RH, Score=176, Expect=2e-56]} {Mouse: ENSMUSG00000021660, Btf3, basic transcription factor 3, [RH, Score=176, Expect=1e-56]} {Dmel: FBgn0031264, CG11835, [Score=165, Expect=1e-47]} {Celegans: WBGene00002045, icd-1, Transcription factor BTF3 homolog, [Score=169, Expect=4e-54]} {Smed: dd_Smed_v6_358_0_1, dd_Smed_v6_358_0_1, [Score=174, Expect=4e-56]} {RNA1509_32581, RNA1509_40570, RNA1509_6036} {RNA1310_16961.2, RNA1509_32581, RNA1509_40570, RNA1509_6036} {RNA1509_32581, RNA1509_40570, RNA1509_6036, RNA815_12135.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA