M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22700

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22700 17 0.36 Mlig455_007413, Mlig455_007525

Neo: -

Age: -

Mlig455_007413 {REF} {Length: 791} {NoTransDecoderORF} {RNA1310_90422}

Mlig455_007525 {REF} {Length: 900} {NoTransDecoderORF} {RNA1310_90422}

Cumulative graph for MligTC455_22700

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.242 0.923 0.99975 1.00000
RegionR2 2.048 0.923 0.93523 1.00000
RegionR3 3.124 0.923 0.40509 0.93233
RegionR4 1.091 0.923 0.46843 0.79643
RegionR5 -0.408 0.923 0.81295 1.00000
RegionR6 -1.345 0.923 0.99949 1.00000
RegionR7 -1.536 0.923 0.99947 1.00000
RegionR8 -1.731 0.923 0.99958 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.023 0.923 1.00000 1.00000
RegenerationR2 -1 0.923 0.74983 0.97320
RegenerationR3 2.141 0.923 0.60025 0.90789
RegenerationR4 0.712 0.923 0.90280 1.00000
RegenerationR5 1.317 0.923 0.70879 0.95507
RegenerationR6 3.642 0.923 0.21357 0.55730
RegenerationBL 1.719 0.923 0.99970 1.00000
RegenerationTP 1.326 0.923 1.00000 1.00000


Genes with expression patterns similar to MligTC455_22700

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22700 17 0.36 Mlig455_007413, Mlig455_007525

Neo: -

Age: -

 3 1.000 - - 1.000 - 1.000

Mlig455_007413 {REF} {Length: 791} {NoTransDecoderORF} {RNA1310_90422}

Mlig455_007525 {REF} {Length: 900} {NoTransDecoderORF} {RNA1310_90422}
2. MligTC455_49470 54 1.13 Mlig455_054252

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.395

Region-enriched R3: 5.217/0.00090

 B3GNT5 1.78 0.825 - - - - 0.955 Mlig455_054252 {REF} {Length: 3081} {Pfam: Galactosyltransferase [PF01762.23, score=90.8]} {Human: ENSG00000176597, B3GNT5, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, [Score=99.4, Expect=6e-22]} {Mouse: ENSMUSG00000034780, B3galt1, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1, [Score=89.0, Expect=6e-19]} {Dmel: FBgn0000221, brn, brainiac, [Score=77.4, Expect=3e-15]} {Celegans: WBGene00044630, bus-17, Hexosyltransferase, [RH, Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_13702_0_1, dd_Smed_v6_13702_0_1, [RH, Score=170, Expect=1e-47]} {RNA1509_54587} {RNA1310_18654} {RNA815_8083}
3. MligTC455_45517 5935 123.64 Mlig455_019215

Neo: -

Age: logFC(26M/2M)=0.286

Region-enriched R3: 6.104/0.00000
Region-enriched R2: 4.546/0.00002

 1.727 0.775 - - - - 0.952 Mlig455_019215 {REF} {Length: 894} {RNA1509_2707, RNA1509_2771} {RNA1310_17478.1, RNA1509_2707, RNA1509_2771} {RNA1509_2707, RNA1509_2771, RNA815_12018.1}
4. MligTC455_45518 6058 126.2 Mlig455_035564

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.828

Region-enriched R3: 6.058/0.00000
Region-enriched R2: 4.482/0.00003

 1.725 0.773 - - - - 0.952 Mlig455_035564 {REF} {Length: 516} {RNA1509_2707} {RNA1310_17478.1} {RNA815_12018.1}
5. MligTC455_13522 37 0.76 Mlig455_053843

Neo: -

Age: -

 SBK1 1.714 - - - 0.950 - 0.764 Mlig455_053843 {REF} {Length: 1643} {Pfam: Protein kinase domain [PF00069.27, score=136.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=105.2]; Kinase-like [PF14531.8, score=20.3]} {Human: ENSG00000188322, SBK1, SH3 domain binding kinase 1, [Score=247, Expect=8e-78]} {Mouse: ENSMUSG00000042978, Sbk1, SH3-binding kinase 1, [Score=247, Expect=5e-78]} {Dmel: FBgn0034137, CG4945, [RH, Score=204, Expect=2e-60]} {Celegans: WBGene00012792, Y43D4A.6, [Score=112, Expect=8e-28]} {Smed: dd_Smed_v6_5328_1_1, dd_Smed_v6_5328_1_1, [Score=101, Expect=1e-23]} {RNA1310_55113}
6. MligTC455_22061 1034 21.54 Mlig455_023681

Neo: -

Age: Down-Down-Up

Region-specific R3: 6.421

Region-enriched R3: 6.675/0.00000
Region-enriched R2: 3.513/0.00265

 1.673 0.723 - - - - 0.950 Mlig455_023681 {REF} {Length: 594} {RNA1509_30789} {RNA1310_74956, RNA1509_30789} {RNA1509_30789, RNA815_42722.1}
7. MligTC455_06440 16 0.34 Mlig455_051822, Mlig455_065065

Neo: -

Age: -

 1 - - - 1.000 - -

Mlig455_051822 {REF} {Length: 335} {Celegans: WBGene00021449, mltn-7, MLt-TeN (Mlt-10) related, [Score=75.5, Expect=1e-17]}

Mlig455_065065 {REF} {Length: 666} {NoTransDecoderORF} {RNA1509_54430} {RNA1310_51692} {RNA815_25852}
8. MligTC455_18023 67 1.41 Mlig455_036442, Mlig455_054353

Neo: -

Age: -

 NPFFR2 1 - - - 1.000 - -

Mlig455_036442 {REF} {Length: 2199} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=151.7]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=24.4]} {Human: ENSG00000056291, NPFFR2, neuropeptide FF receptor 2, [Score=138, Expect=2e-35]; ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [Score=133, Expect=6e-34]; ENSG00000123901, GPR83, G protein-coupled receptor 83, [Score=132, Expect=9e-34]} {Mouse: ENSMUSG00000031212, Pgr15l, G protein-coupled receptor 15-like, [Score=142, Expect=3e-37]; ENSMUSG00000031932, Gpr83, G protein-coupled receptor 83, [Score=138, Expect=4e-36]} {Dmel: FBgn0004841, TkR86C, Tachykinin-like receptor at 86C, [Score=143, Expect=2e-37]} {Celegans: WBGene00022004, npr-22, NeuroPeptide Receptor family, [Score=102, Expect=2e-23]} {Smed: dd_Smed_v6_10020_0_1, dd_Smed_v6_10020_0_1, [Score=117, Expect=4e-29]} {RNA1310_39335} {RNA815_19276}

Mlig455_054353 {REF} {Length: 2931} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=151.3]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=24.8]} {Human: ENSG00000056291, NPFFR2, neuropeptide FF receptor 2, [Score=139, Expect=3e-35]; ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [Score=133, Expect=1e-33]} {Mouse: ENSMUSG00000031212, Pgr15l, G protein-coupled receptor 15-like, [Score=143, Expect=4e-37]; ENSMUSG00000031932, Gpr83, G protein-coupled receptor 83, [Score=138, Expect=8e-36]} {Dmel: FBgn0004841, TkR86C, Tachykinin-like receptor at 86C, [Score=144, Expect=2e-37]} {Celegans: WBGene00022004, npr-22, NeuroPeptide Receptor family, [Score=103, Expect=1e-23]} {Smed: dd_Smed_v6_10020_0_1, dd_Smed_v6_10020_0_1, [Score=117, Expect=6e-29]} {RNA1310_39335} {RNA815_19276}
9. MligTC455_36159 12 0.24 Mlig455_038776, Mlig455_067680

Neo: -

Age: -

 0.999 - - - - - 0.999

Mlig455_038776 {REF} {Length: 1184} {Smed: dd_Smed_v6_47583_0_1, dd_Smed_v6_47583_0_1, [RH, Score=80.9, Expect=3e-18]}

Mlig455_067680 {REF} {Length: 5269} {Pfam: Immunoglobulin domain [PF13895.8, score=62.2]; Immunoglobulin domain [PF13927.8, score=45.8]; Immunoglobulin I-set domain [PF07679.18, score=33.0]; F5/8 type C domain [PF00754.27, score=32.4]; Immunoglobulin domain [PF00047.27, score=25.2]; Ig-like C2-type domain [PF06328.13, score=23.4]; Immunoglobulin V-set domain [PF07686.19, score=23.3]; Izumo-like Immunoglobulin domain [PF16706.7, score=23.0]; Sad1 / UNC-like C-terminal [PF07738.15, score=18.8]} {RNA1310_51630} {RNA815_49405}
10. MligTC455_06800 94 1.96 Mlig455_036964, Mlig455_069813

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.095

 0.988 - - - 0.988 - -

Mlig455_036964 {REF} {Length: 428} {NoTransDecoderORF} {RNA1509_58021} {RNA1310_98977} {RNA815_51185}

Mlig455_069813 {REF} {Length: 1375} {NoTransDecoderORF} {RNA1509_58021} {RNA1310_98977, RNA1509_58021} {RNA1509_58021, RNA815_51185}
11. MligTC455_28992 248 5.17 Mlig455_007574

Neo: -

Age: -

Region-enriched R3: 5.359/0.00013

 SIX1 0.982 - - - - - 0.982 Mlig455_007574 {REF} {Length: 2756} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=146.3]; Homeodomain [PF00046.31, score=56.2]; Homeobox KN domain [PF05920.13, score=49.9]} {Human: ENSG00000126778, SIX1, SIX homeobox 1, [Score=313, Expect=9e-104]; ENSG00000170577, SIX2, SIX homeobox 2, [Score=307, Expect=3e-101]} {Mouse: ENSMUSG00000051367, Six1, sine oculis-related homeobox 1, [Score=313, Expect=5e-104]; ENSMUSG00000024134, Six2, sine oculis-related homeobox 2, [Score=308, Expect=1e-101]} {Dmel: FBgn0003460, so, sine oculis, [Score=303, Expect=3e-98]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [RH, Score=246, Expect=2e-78]} {Smed: dd_Smed_v6_15436_0_1, dd_Smed_v6_15436_0_1, [RH, Score=326, Expect=2e-106]} {RNA1509_55511} {RNA1310_27700, RNA1509_55511} {RNA1509_55511, RNA815_16067}
12. MligTC455_05875 31 0.65 Mlig455_011261

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.955

Region-enriched R4: 3.843/0.03289

 0.976 - - - - - 0.976 Mlig455_011261 {REF} {Length: 1105} {NoTransDecoderORF} {RNA1509_25900} {RNA1310_26604.1, RNA1509_25900} {RNA1509_25900, RNA815_43886}
13. MligTC455_15027 18 0.37 Mlig455_044364

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_044364 {REF} {Length: 1060} {NoTransDecoderORF} {RNA1310_105534.1}
14. MligTC455_53396 62 1.28 Mlig455_015104

Neo: -

Age: Down-Up-Down

Region-enriched R3: 5.872/0.01335

 0.963 - - - - - 0.963 Mlig455_015104 {REF} {Length: 524} {RNA1310_47413} {RNA815_29456.2}
15. MligTC455_09218 33 0.69 Mlig455_012124

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_012124 {REF} {Length: 1339} {NoTransDecoderORF} {RNA1509_45125} {RNA1310_7802} {RNA815_61480}
16. MligTC455_26474 257 5.36 Mlig455_023312

Neo: Irradiation

Age: Up-Down-Up

Region-enriched R3: 5.747/0.00000

 OTOG 0.958 - - - - - 0.958 Mlig455_023312 {REF} {Length: 3545} {Pfam: Cystine-knot domain [PF00007.24, score=40.6]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=28.4]} {Human: ENSG00000188162, OTOG, otogelin, [Score=53.9, Expect=6e-07]} {Mouse: ENSMUSG00000048191, Muc6, mucin 6, gastric, [Score=50.4, Expect=4e-06]} {Smed: dd_Smed_v6_3185_0_1, dd_Smed_v6_3185_0_1, [Score=210, Expect=6e-62]} {RNA1509_42162} {RNA1310_2753} {RNA815_1083.1}
17. MligTC455_14493 18 0.37 Mlig455_005482

Neo: -

Age: -

Regeneration-upregulated R3: 2.722

Regeneration-enriched R3: 2.722

 0.956 - - - 0.956 - - Mlig455_005482 {REF} {Length: 2571} {RNA1310_19406}
18. MligTC455_43398 31 0.65 Mlig455_068365

Neo: -

Age: -

 GRIA1 0.956 - - - 0.956 - - Mlig455_068365 {REF} {Length: 3108} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=77.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=40.4]} {Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=77.4, Expect=3e-16]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=75.5, Expect=8e-17]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=74.7, Expect=2e-15]} {Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=77.0, Expect=2e-16]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=74.7, Expect=1e-15]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=74.7, Expect=1e-15]} {Dmel: FBgn0026255, clumsy, [Score=74.7, Expect=9e-16]} {Celegans: WBGene00001617, glr-6, GLutamate Receptor family (AMPA), [Score=80.9, Expect=6e-18]} {Smed: dd_Smed_v6_20242_0_1, dd_Smed_v6_20242_0_1, [Score=74.7, Expect=5e-16]} {RNA1310_18228} {RNA815_23153}
19. MligTC455_43234 20 0.42 Mlig455_047739

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_047739 {REF} {Length: 899} {RNA1310_56027} {RNA815_46180}
20. MligTC455_13098 19 0.4 Mlig455_020992

Neo: -

Age: -

 C1GALT1 0.953 - - - - - 0.953 Mlig455_020992 {REF} {Length: 1108} {Pfam: Galactosyltransferase [PF01762.23, score=27.6]} {Human: ENSG00000106392, C1GALT1, core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, [Score=160, Expect=3e-46]} {Mouse: ENSMUSG00000042460, C1galt1, core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1, [Score=162, Expect=1e-46]} {Dmel: FBgn0032078, C1GalTA, Core 1 Galactosyltransferase A, [Score=138, Expect=8e-38]} {Celegans: WBGene00008019, C38H2.2, Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, [Score=165, Expect=4e-48]} {Smed: dd_Smed_v6_4310_0_1, dd_Smed_v6_4310_0_1, [Score=185, Expect=3e-56]} {RNA1310_125941}
21. MligTC455_11876 18 0.37 Mlig455_039465

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_039465 {REF} {Length: 1275} {tRNA: Val(AAC),pseudo, score=37.3} {RNA1509_52678} {RNA1310_117665} {RNA815_3941}
22. MligTC455_11931 892 18.58 Mlig455_023269

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_023269 {REF} {Length: 1891} {RNA1509_48039} {RNA1310_25334} {RNA815_22354}
23. MligTC455_28800 43 0.89 Mlig455_039444

Neo: -

Age: -

 SETMAR 0.952 - - - 0.952 - - Mlig455_039444 {REF} {Length: 2560} {Pfam: DDE superfamily endonuclease [PF13358.8, score=32.4]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=49.7, Expect=4e-07]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=45.8, Expect=4e-07]} {RNA1509_54968} {RNA1310_12096.1} {RNA815_31906.1}
24. MligTC455_44750 13 0.27 Mlig455_039397

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.802

 0.95 - - - 0.950 - - Mlig455_039397 {REF} {Length: 1327} {tRNA: Val(CAC), score=73.1} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=25.8]} {RNA1509_24847} {RNA1310_32778} {RNA815_15818}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA