M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22919

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22919 343 7.15 Mlig455_039379

Neo: -

Age: Up-Down-Down

 TRPC5 Mlig455_039379 {REF} {Length: 4064} {Pfam: Transient receptor ion channel II [PF08344.13, score=97.5]; Ion transport protein [PF00520.33, score=92.8]; Polycystin cation channel [PF08016.14, score=46.0]; Ankyrin repeats (many copies) [PF13637.8, score=25.5]; Ankyrin repeats (3 copies) [PF12796.9, score=24.1]} {Human: ENSG00000072315, TRPC5, transient receptor potential cation channel subfamily C member 5, [RH, Score=747, Expect=0.0]; ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [RH, Score=738, Expect=0.0]} {Mouse: ENSMUSG00000041710, Trpc5, transient receptor potential cation channel, subfamily C, member 5, [RH, Score=749, Expect=0.0]; ENSMUSG00000027748, Trpc4, transient receptor potential cation channel, subfamily C, member 4, [RH, Score=739, Expect=0.0]} {Dmel: FBgn0032593, Trpgamma, Transient receptor potential cation channel gamma, [RH, Score=853, Expect=0.0]} {Celegans: WBGene00006615, trp-2, TRP (Transient receptor potential) channel family; TRP homlogous cation channel protein, [RH, Score=701, Expect=0.0]} {Smed: dd_Smed_v6_20495_0_1, dd_Smed_v6_20495_0_1, [RH, Score=1006, Expect=0.0]} {RNA1509_26602, RNA1509_34758} {RNA1310_2133, RNA1509_26602, RNA1509_34758} {RNA1509_26602, RNA1509_34758, RNA815_924}

Cumulative graph for MligTC455_22919

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.041 3.318 0.54286 1.00000
RegionR2 1.559 3.318 0.01663 0.13699
RegionR3 0.154 3.318 0.78120 1.00000
RegionR4 -0.876 3.318 0.26222 0.56524
RegionR5 -0.906 3.318 0.16220 0.42497
RegionR6 -0.148 3.318 0.82872 1.00000
RegionR7 0.942 3.318 0.18747 0.78978
RegionR8 -1.767 3.318 0.27603 0.90029

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.425 3.318 0.11380 0.83847
RegenerationR2 -0.722 3.318 0.13553 0.56274
RegenerationR3 0.303 3.318 0.62516 0.91798
RegenerationR4 0.298 3.318 0.64605 0.93106
RegenerationR5 0.367 3.318 0.53293 0.87614
RegenerationR6 -0.061 3.318 0.91595 1.00000
RegenerationBL -1.05 3.318 0.36300 0.73179
RegenerationTP 0.874 3.318 0.39706 0.82716


Genes with expression patterns similar to MligTC455_22919

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22919 343 7.15 Mlig455_039379

Neo: -

Age: Up-Down-Down

 TRPC5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_039379 {REF} {Length: 4064} {Pfam: Transient receptor ion channel II [PF08344.13, score=97.5]; Ion transport protein [PF00520.33, score=92.8]; Polycystin cation channel [PF08016.14, score=46.0]; Ankyrin repeats (many copies) [PF13637.8, score=25.5]; Ankyrin repeats (3 copies) [PF12796.9, score=24.1]} {Human: ENSG00000072315, TRPC5, transient receptor potential cation channel subfamily C member 5, [RH, Score=747, Expect=0.0]; ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [RH, Score=738, Expect=0.0]} {Mouse: ENSMUSG00000041710, Trpc5, transient receptor potential cation channel, subfamily C, member 5, [RH, Score=749, Expect=0.0]; ENSMUSG00000027748, Trpc4, transient receptor potential cation channel, subfamily C, member 4, [RH, Score=739, Expect=0.0]} {Dmel: FBgn0032593, Trpgamma, Transient receptor potential cation channel gamma, [RH, Score=853, Expect=0.0]} {Celegans: WBGene00006615, trp-2, TRP (Transient receptor potential) channel family; TRP homlogous cation channel protein, [RH, Score=701, Expect=0.0]} {Smed: dd_Smed_v6_20495_0_1, dd_Smed_v6_20495_0_1, [RH, Score=1006, Expect=0.0]} {RNA1509_26602, RNA1509_34758} {RNA1310_2133, RNA1509_26602, RNA1509_34758} {RNA1509_26602, RNA1509_34758, RNA815_924}
2. MligTC455_22920 196 4.08 Mlig455_039387

Neo: -

Age: -

 TRPC4 5.286 0.965 0.950 0.902 0.852 0.871 0.746 Mlig455_039387 {REF} {Length: 2289} {Human: ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [Score=62.4, Expect=2e-10]} {Mouse: ENSMUSG00000027748, Trpc4, transient receptor potential cation channel, subfamily C, member 4, [Score=63.5, Expect=6e-11]} {Dmel: FBgn0032593, Trpgamma, Transient receptor potential cation channel gamma, [Score=98.6, Expect=6e-23]} {Smed: dd_Smed_v6_20495_0_1, dd_Smed_v6_20495_0_1, [Score=155, Expect=1e-42]} {RNA1509_26602} {RNA1310_3579} {RNA815_924}
3. MligTC455_40648 60 1.24 Mlig455_034479

Neo: -

Age: Down-Up-Up

 3.409 0.726 0.840 - 0.958 0.885 - Mlig455_034479 {REF} {Length: 2499} {RNA1310_42980.1} {RNA815_47590}
4. MligTC455_08275 266 5.54 Mlig455_043965, Mlig455_044035

Neo: -

Age: Up-Down-Up

 ATP2B3 3.324 - - 0.895 0.738 0.972 0.719

Mlig455_043965 {REF} {Length: 354} {TRANSSPLICED} {Human: ENSG00000067842, ATP2B3, ATPase plasma membrane Ca2+ transporting 3, [Score=63.2, Expect=5e-13]; ENSG00000157087, ATP2B2, ATPase plasma membrane Ca2+ transporting 2, [Score=60.5, Expect=4e-12]} {Mouse: ENSMUSG00000031376, Atp2b3, ATPase, Ca++ transporting, plasma membrane 3, [Score=62.8, Expect=4e-13]; ENSMUSG00000030302, Atp2b2, ATPase, Ca++ transporting, plasma membrane 2, [Score=60.5, Expect=3e-12]} {Celegans: WBGene00003153, mca-3, Calcium-transporting ATPase, [Score=60.5, Expect=1e-12]} {Smed: dd_Smed_v6_1721_0_1, dd_Smed_v6_1721_0_1, [Score=53.5, Expect=3e-10]} {RNA1509_29344} {RNA1310_1116.2} {RNA815_787}

Mlig455_044035 {REF} {Length: 4707} {TRANSSPLICED} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=121.6]; E1-E2 ATPase [PF00122.22, score=110.5]; Cation transport ATPase (P-type) [PF13246.8, score=62.4]; Cation transporter/ATPase, N-terminus [PF00690.28, score=57.2]; haloacid dehalogenase-like hydrolase [PF00702.28, score=56.8]; haloacid dehalogenase-like hydrolase [PF08282.14, score=27.8]} {Human: ENSG00000067842, ATP2B3, ATPase plasma membrane Ca2+ transporting 3, [Score=1219, Expect=0.0]; ENSG00000157087, ATP2B2, ATPase plasma membrane Ca2+ transporting 2, [Score=1190, Expect=0.0]; ENSG00000058668, ATP2B4, ATPase plasma membrane Ca2+ transporting 4, [Score=1183, Expect=0.0]} {Mouse: ENSMUSG00000031376, Atp2b3, ATPase, Ca++ transporting, plasma membrane 3, [Score=1209, Expect=0.0]; ENSMUSG00000030302, Atp2b2, ATPase, Ca++ transporting, plasma membrane 2, [Score=1187, Expect=0.0]; ENSMUSG00000019943, Atp2b1, ATPase, Ca++ transporting, plasma membrane 1, [Score=1170, Expect=0.0]} {Dmel: FBgn0259214, PMCA, plasma membrane calcium ATPase, [Score=1228, Expect=0.0]} {Celegans: WBGene00003153, mca-3, Calcium-transporting ATPase, [Score=1162, Expect=0.0]} {Smed: dd_Smed_v6_4145_0_1, dd_Smed_v6_4145_0_1, [Score=1244, Expect=0.0]} {RNA1509_19936, RNA1509_2077} {RNA1310_1116.2, RNA1509_19936} {RNA1509_19936, RNA815_787}
5. MligTC455_43676 56 1.16 Mlig455_058053, Mlig455_058096

Neo: -

Age: -

 2.76 - 0.909 - 0.952 0.899 -

Mlig455_058053 {REF} {Length: 391} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_102705} {RNA815_52459}

Mlig455_058096 {REF} {Length: 1983} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=51.3]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [Score=90.1, Expect=1e-19]} {RNA1509_1472} {RNA1310_25467} {RNA815_39314}
6. MligTC455_45801 473 9.86 Mlig455_060953

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.971/0.00047

 TENM1 2.678 0.960 0.788 - 0.930 - - Mlig455_060953 {REF} {Length: 10667} {Pfam: EGF-like domain [PF07974.15, score=60.5]} {Human: ENSG00000009694, TENM1, teneurin transmembrane protein 1, [RH, Score=739, Expect=0.0]} {Mouse: ENSMUSG00000016150, Tenm1, teneurin transmembrane protein 1, [RH, Score=750, Expect=0.0]} {Dmel: FBgn0004449, Ten-m, Tenascin major, [Score=710, Expect=0.0]} {Celegans: WBGene00006498, ten-1, Teneurin-1, [RH, Score=459, Expect=6e-130]} {Smed: dd_Smed_v6_5439_0_3, dd_Smed_v6_5439_0_3, [Score=593, Expect=5e-175]} {RNA1509_19240} {RNA1310_136, RNA1509_19240} {RNA1509_19240, RNA815_6451}
7. MligTC455_22125 178 3.71 Mlig455_028579, Mlig455_028597

Neo: -

Age: -

Region-enriched R2: 5.949/0.00261

 2.647 - 0.888 - 0.959 0.800 -

Mlig455_028579 {REF} {Length: 993} {RNA1509_54214} {RNA1310_51652} {RNA815_36975}

Mlig455_028597 {REF} {Length: 962} {RNA1509_54214} {RNA1310_51652} {RNA815_36975}
8. MligTC455_38775 266 5.54 Mlig455_066758, Mlig455_069705

Neo: -

Age: -

Region-specific R2: 6.147

Region-enriched R2: 5.505/0.02411

 WNT6 2.607 - 0.892 - 0.952 0.763 -

Mlig455_066758 {REF} {Length: 2739} {Pfam: wnt family [PF00110.21, score=158.2]} {Human: ENSG00000115596, WNT6, Wnt family member 6, [Score=77.4, Expect=9e-15]; ENSG00000134245, WNT2B, Wnt family member 2B, [Score=74.3, Expect=1e-13]} {Mouse: ENSMUSG00000033227, Wnt6, wingless-type MMTV integration site family, member 6, [Score=74.3, Expect=6e-14]; ENSMUSG00000027840, Wnt2b, wingless-type MMTV integration site family, member 2B, [Score=74.3, Expect=9e-14]} {Dmel: FBgn0031902, Wnt6, Wnt oncogene analog 6, [Score=70.9, Expect=9e-13]} {Celegans: WBGene00000857, cwn-1, [Score=73.9, Expect=4e-14]} {Smed: dd_Smed_v6_13487_0_1, dd_Smed_v6_13487_0_1, [Score=71.2, Expect=3e-13]} {RNA1509_23528} {RNA1310_12823.2} {RNA815_8552}

Mlig455_069705 {REF} {Length: 2713} {Pfam: wnt family [PF00110.21, score=158.2]} {Human: ENSG00000115596, WNT6, Wnt family member 6, [Score=77.4, Expect=1e-14]; ENSG00000134245, WNT2B, Wnt family member 2B, [Score=74.3, Expect=1e-13]} {Mouse: ENSMUSG00000033227, Wnt6, wingless-type MMTV integration site family, member 6, [Score=74.3, Expect=7e-14]; ENSMUSG00000027840, Wnt2b, wingless-type MMTV integration site family, member 2B, [Score=73.9, Expect=1e-13]} {Dmel: FBgn0031902, Wnt6, Wnt oncogene analog 6, [Score=70.9, Expect=9e-13]} {Celegans: WBGene00000857, cwn-1, [Score=73.6, Expect=6e-14]} {Smed: dd_Smed_v6_13487_0_1, dd_Smed_v6_13487_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_23528} {RNA1310_12823.1, RNA1509_23528} {RNA1509_23528, RNA815_8552}
9. MligTC455_33636 175 3.64 Mlig455_027209, Mlig455_050659

Neo: -

Age: logFC(26M/2M)=-0.416

Region-enriched R2: 3.904/0.00709
Region-enriched R3: 2.835/0.03879

 CHRNA10 2.604 0.732 - - 0.956 0.916 -

Mlig455_027209 {REF} {Length: 1614} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=99.8]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=74.0]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=152, Expect=1e-40]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=150, Expect=8e-40]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=149, Expect=2e-39]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=149, Expect=2e-39]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=148, Expect=6e-39]} {Mouse: ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=150, Expect=3e-40]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=150, Expect=5e-40]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=144, Expect=5e-38]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=133, Expect=1e-33]} {Celegans: WBGene00000048, acr-9, AcetylCholine Receptor, [Score=142, Expect=3e-37]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=142, Expect=3e-37]} {RNA1310_19147.1} {RNA815_8553.1}

Mlig455_050659 {REF} {Length: 1670} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=93.6]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=69.9]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=148, Expect=2e-39]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=144, Expect=1e-37]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=141, Expect=1e-36]} {Mouse: ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=148, Expect=1e-39]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=141, Expect=9e-37]} {Dmel: FBgn0004118, nAChRbeta2, nicotinic Acetylcholine Receptor beta2, [Score=134, Expect=4e-34]} {Celegans: WBGene00000048, acr-9, AcetylCholine Receptor, [Score=144, Expect=7e-38]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=141, Expect=6e-37]} {RNA1310_19147.1} {RNA815_8553.1}
10. MligTC455_46285 568 11.84 Mlig455_063390

Neo: -

Age: logFC(26M/2M)=0.488

Region-enriched R2: 4.933/0.00026
Region-enriched R3: 3.321/0.00307

 2.603 - 0.726 - 0.964 0.913 - Mlig455_063390 {REF} {Length: 871} {RNA1509_48573} {RNA1310_59611, RNA1509_48573} {RNA1509_48573, RNA815_35731}
11. MligTC455_19938 250 5.2 Mlig455_063706

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.458

Region-enriched R3: 3.513/0.03723

 NKX2-2 2.537 0.767 0.808 - 0.962 - - Mlig455_063706 {REF} {Length: 2739} {Pfam: Homeodomain [PF00046.31, score=72.6]} {Human: ENSG00000125820, NKX2-2, NK2 homeobox 2, [Score=119, Expect=3e-31]} {Mouse: ENSMUSG00000027434, Nkx2-2, NK2 homeobox 2, [Score=119, Expect=1e-31]} {Dmel: FBgn0261930, vnd, ventral nervous system defective, [Score=112, Expect=2e-27]} {Celegans: WBGene00000447, ceh-24, Homeobox protein ceh-24, [Score=95.9, Expect=8e-23]} {Smed: dd_Smed_v6_2716_0_4, dd_Smed_v6_2716_0_4, [Score=118, Expect=4e-30]} {RNA1509_27298} {RNA1310_16689.1, RNA1509_27298} {RNA1509_27298, RNA815_30453}
12. MligTC455_52727 82 1.72 Mlig455_043336

Neo: -

Age: Down-Up-Down

 2.479 0.791 - - 0.961 0.727 - Mlig455_043336 {REF} {Length: 1410} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=60.5]; Capsular polysaccharide synthesis protein [PF05704.14, score=20.9]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=131, Expect=4e-35]} {RNA1509_41314} {RNA1310_26265} {RNA815_9794.1}
13. MligTC455_50597 118 2.47 Mlig455_000141

Neo: -

Age: -

 2.408 0.721 0.716 - 0.971 - - Mlig455_000141 {REF} {Length: 1083} {RNA1310_48250} {RNA815_57079}
14. MligTC455_46418 178 3.71 Mlig455_056428

Neo: -

Age: -

 1.893 - - - 0.982 0.911 - Mlig455_056428 {REF} {Length: 3626} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=49.8]} {RNA1509_14623} {RNA1310_25579, RNA1509_14623} {RNA1509_14623, RNA815_35028}
15. MligTC455_53413 249 5.2 Mlig455_035022

Neo: -

Age: -

Region-specific R2: 4.451

Region-enriched R2: 3.023/0.00460

 RP1 1.856 - 0.950 - 0.906 - - Mlig455_035022 {REF} {Length: 5065} {Pfam: PLAT/LH2 domain [PF01477.25, score=155.8]; Doublecortin [PF03607.19, score=103.5]; Embryo-specific protein 3, (ATS3) [PF06232.13, score=22.0]} {Human: ENSG00000104237, RP1, RP1, axonemal microtubule associated, [Score=473, Expect=5e-146]} {Mouse: ENSMUSG00000025900, Rp1, retinitis pigmentosa 1 (human), [Score=454, Expect=1e-136]} {Dmel: FBgn0261387, CG17528, [Score=56.6, Expect=1e-07]} {Celegans: WBGene00006993, zyg-8, Serine/threonine-protein kinase zyg-8, [Score=75.5, Expect=2e-13]} {Smed: dd_Smed_v6_10315_0_2, dd_Smed_v6_10315_0_2, [Score=698, Expect=0.0]} {RNA1509_57003} {RNA1310_2710} {RNA815_13802.1}
16. MligTC455_51200 66 1.37 Mlig455_057090

Neo: -

Age: -

 1.844 - 0.890 - 0.954 - - Mlig455_057090 {REF} {Length: 988} {RNA1310_63663} {RNA815_36272}
17. MligTC455_25382 4668 97.26 Mlig455_000103, Mlig455_063773

Neo: -

Age: -

Region-specific R2: 3.508

Region-enriched R2: 3.123/0.00000

 1.814 - - - 0.962 0.852 -

Mlig455_000103 {REF} {Length: 990} {RNA1509_36813} {RNA1310_39295, RNA1509_36813} {RNA1509_36813, RNA815_13177}

Mlig455_063773 {REF} {Length: 890} {RNA1509_6028} {RNA1310_39295} {RNA815_13177}
18. MligTC455_43507 1112 23.16 Mlig455_055318

Neo: -

Age: logFC(26M/2M)=0.860

Region-enriched R3: 2.019/0.02166

 1.809 - - - 0.951 0.858 - Mlig455_055318 {REF} {Length: 948} {RNA1509_17222} {RNA1310_44913.2} {RNA815_37256}
19. MligTC455_21668 84 1.74 Mlig455_024837

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.324

 PPP3R1 1.804 - 0.832 - 0.972 - - Mlig455_024837 {REF} {Length: 1650} {Pfam: EF hand [PF00036.34, score=92.6]; EF-hand domain pair [PF13499.8, score=86.6]; EF-hand domain [PF13405.8, score=74.3]; EF hand [PF13202.8, score=72.6]; EF-hand domain pair [PF13833.8, score=65.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=30.2]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=27.0]; EF-hand domain [PF14658.8, score=21.7]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [RH, Score=289, Expect=5e-101]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [RH, Score=289, Expect=3e-101]} {Dmel: FBgn0010014, CanB, Calcineurin B, [RH, Score=282, Expect=1e-98]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [RH, Score=272, Expect=7e-95]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [RH, Score=281, Expect=1e-98]} {RNA1509_14613} {RNA1310_16848.1} {RNA815_6272}
20. MligTC455_43950 2296 47.84 Mlig455_029261, Mlig455_035647, Mlig455_035748

Neo: -

Age: -

Regeneration-downregulated BL: -2.094

Regeneration-depleted BL: -2.094

 1.765 - - - 0.953 0.812 -

Mlig455_029261 {REF} {Length: 2798} {RNA1509_28538, RNA1509_39513, RNA1509_9241} {RNA1310_10383, RNA1509_28538, RNA1509_39513, RNA1509_9241} {RNA1509_28538, RNA1509_39513, RNA1509_9241, RNA815_3519}

Mlig455_035647 {REF} {Length: 2505} {RNA1509_9241} {RNA1310_10383} {RNA815_3519}

Mlig455_035748 {REF} {Length: 2496} {RNA1509_9241} {RNA1310_10383} {RNA815_3519}
21. MligTC455_20017 520 10.83 Mlig455_041990

Neo: -

Age: Down-Up-Up

Region-enriched R2: 4.348/0.00021

 1.762 - 0.957 - 0.805 - - Mlig455_041990 {REF} {Length: 965} {Pfam: EF-hand domain [PF13405.8, score=60.3]; EF hand [PF00036.34, score=52.6]; EF-hand domain pair [PF13499.8, score=49.5]; EF hand [PF13202.8, score=40.2]; EF-hand domain [PF14658.8, score=30.6]; EF-hand domain pair [PF13833.8, score=30.2]} {Dmel: FBgn0052103, CG32103, [Score=43.5, Expect=1e-05]} {Smed: dd_Smed_v6_16347_0_2, dd_Smed_v6_16347_0_2, [Score=67.8, Expect=1e-15]} {RNA1509_17125, RNA1509_31091} {RNA1310_56976, RNA1509_17125, RNA1509_31091} {RNA1509_17125, RNA1509_31091, RNA815_29327}
22. MligTC455_29077 338 7.03 Mlig455_031356, Mlig455_031357

Neo: -

Age: -

 1.756 - 0.787 - 0.969 - -

Mlig455_031356 {REF} {Length: 2138} {RNA1509_35450} {RNA1310_12556.2} {RNA815_5170.1}

Mlig455_031357 {REF} {Length: 2357} {NoTransDecoderORF} {RNA1509_54862} {RNA1310_63.1} {RNA815_5170.1}
23. MligTC455_40425 281 5.86 Mlig455_013340

Neo: -

Age: Up-Down-Up

 1.734 - - - 0.952 0.782 - Mlig455_013340 {REF} {Length: 1766} {RNA1310_56574.2} {RNA815_35999}
24. MligTC455_42023 115 2.39 Mlig455_017828

Neo: -

Age: Up-Down-Down

 KCNS3 1.717 - 0.745 - 0.972 - - Mlig455_017828 {REF} {Length: 1820} {Pfam: Ion channel [PF07885.18, score=56.7]; Ion transport protein [PF00520.33, score=40.5]; Ligand-gated ion channel [PF00060.28, score=32.7]} {Human: ENSG00000170745, KCNS3, potassium voltage-gated channel modifier subfamily S member 3, [Score=58.9, Expect=1e-08]} {Mouse: ENSMUSG00000043673, Kcns3, potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3, [Score=58.2, Expect=1e-08]} {Dmel: FBgn0085395, Shawl, Shaw-like, [Score=49.7, Expect=6e-06]} {Celegans: WBGene00012967, kvs-4, [Score=55.1, Expect=8e-08]} {Smed: dd_Smed_v6_13710_0_1, dd_Smed_v6_13710_0_1, [Score=50.1, Expect=3e-06]} {RNA1310_24023} {RNA815_19497}
25. MligTC455_19304 36 0.76 Mlig455_036451

Neo: -

Age: -

 1.711 - - - 0.961 0.750 - Mlig455_036451 {REF} {Length: 1603} {Smed: dd_Smed_v6_16261_0_1, dd_Smed_v6_16261_0_1, [RH, Score=266, Expect=8e-87]} {RNA1310_117429}
26. MligTC455_09445 68 1.41 Mlig455_034437

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_034437 {REF} {Length: 1224} {TRANSSPLICED}
27. MligTC455_05701 250 5.21 Mlig455_020813

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.791

Region-enriched R7: 4.270/0.02152

 CTSA 0.972 - - - 0.972 - - Mlig455_020813 {REF} {Length: 1956} {Pfam: Serine carboxypeptidase [PF00450.24, score=286.5]} {Human: ENSG00000064601, CTSA, cathepsin A, [Score=192, Expect=4e-55]} {Mouse: ENSMUSG00000017760, Ctsa, cathepsin A, [Score=185, Expect=1e-52]} {Dmel: FBgn0038738, CG4572, [RH, Score=115, Expect=2e-27]} {Celegans: WBGene00019605, ctsa-1, Uncharacterized serine carboxypeptidase ctsa-1, [Score=189, Expect=2e-54]} {Smed: dd_Smed_v6_785_0_1, dd_Smed_v6_785_0_1, [Score=201, Expect=7e-59]} {RNA1509_59882} {RNA1310_13629, RNA1509_59882} {RNA1509_59882, RNA815_3781}
28. MligTC455_06678 10 0.22 Mlig455_051040

Neo: -

Age: -

 SLC7A1 0.967 - - - 0.967 - - Mlig455_051040 {REF} {Length: 1969} {Pfam: Amino acid permease [PF13520.8, score=122.2]; Amino acid permease [PF00324.23, score=107.8]; C-terminus of AA_permease [PF13906.8, score=56.1]} {Human: ENSG00000139514, SLC7A1, solute carrier family 7 member 1, [Score=297, Expect=3e-92]} {Mouse: ENSMUSG00000041313, Slc7a1, solute carrier family 7 (cationic amino acid transporter, y+ system), member 1, [Score=300, Expect=2e-93]; ENSMUSG00000022756, Slc7a4, solute carrier family 7 (cationic amino acid transporter, y+ system), member 4, [Score=297, Expect=3e-92]; ENSMUSG00000054753, AU018091, expressed sequence AU018091, [Score=290, Expect=5e-89]; ENSMUSG00000107871, AU018091, expressed sequence AU018091, [Score=290, Expect=5e-89]} {Dmel: FBgn0036984, CG13248, [Score=290, Expect=1e-89]} {Celegans: WBGene00016806, C50D2.2, [Score=293, Expect=1e-91]} {Smed: dd_Smed_v6_8652_0_4, dd_Smed_v6_8652_0_4, [Score=436, Expect=3e-147]} {RNA1310_82370} {RNA815_51664}
29. MligTC455_23785 36 0.75 Mlig455_001521

Neo: -

Age: Up-Down-Down

 BRSK1 0.966 - - - 0.966 - - Mlig455_001521 {REF} {Length: 3554} {Pfam: Protein kinase domain [PF00069.27, score=239.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=129.4]; Phosphotransferase enzyme family [PF01636.25, score=24.0]} {Human: ENSG00000160469, BRSK1, BR serine/threonine kinase 1, [RH, Score=665, Expect=0.0]} {Mouse: ENSMUSG00000035390, Brsk1, BR serine/threonine kinase 1, [RH, Score=665, Expect=0.0]} {Dmel: FBgn0036544, sff, sugar-free frosting, [RH, Score=605, Expect=0.0]} {Celegans: WBGene00004719, sad-1, Serine/threonine kinase SAD-1, [RH, Score=600, Expect=0.0]} {Smed: dd_Smed_v6_5328_1_3, dd_Smed_v6_5328_1_3, [RH, Score=694, Expect=0.0]} {RNA1509_20961} {RNA1310_11093.1} {RNA815_12027}
30. MligTC455_54019 59 1.23 Mlig455_050979

Neo: -

Age: logFC(26M/2M)=0.902

 DEGS2 0.966 - 0.966 - - - - Mlig455_050979 {REF} {Length: 2343} {Pfam: Fatty acid desaturase [PF00487.26, score=84.5]; Sphingolipid Delta4-desaturase (DES) [PF08557.12, score=59.9]} {Human: ENSG00000168350, DEGS2, delta 4-desaturase, sphingolipid 2, [Score=332, Expect=1e-111]} {Mouse: ENSMUSG00000021263, Degs2, delta(4)-desaturase, sphingolipid 2, [Score=320, Expect=3e-107]; ENSMUSG00000038633, Degs1, delta(4)-desaturase, sphingolipid 1, [Score=304, Expect=8e-101]} {Dmel: FBgn0001941, ifc, infertile crescent, [Score=354, Expect=1e-120]} {Celegans: WBGene00013197, ttm-5, Putative sphingolipid delta(4)-desaturase/C4-monooxygenase, [Score=325, Expect=1e-108]} {Smed: dd_Smed_v6_7414_0_1, dd_Smed_v6_7414_0_1, [RH, Score=422, Expect=6e-147]} {RNA1509_11966, RNA1509_33417, RNA1509_59878} {RNA1310_11518, RNA1509_11966, RNA1509_33417, RNA1509_59878} {RNA1509_11966, RNA1509_33417, RNA1509_59878, RNA815_6718}
31. MligTC455_52568 15 0.32 Mlig455_018332

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_018332 {REF} {Length: 784}
32. MligTC455_34332 28 0.59 Mlig455_005058

Neo: -

Age: -

 NKX3-2 0.962 - - - 0.962 - - Mlig455_005058 {REF} {Length: 1884} {Pfam: Homeodomain [PF00046.31, score=68.8]} {Human: ENSG00000109705, NKX3-2, NK3 homeobox 2, [RH, Score=118, Expect=4e-29]} {Mouse: ENSMUSG00000049691, Nkx3-2, NK3 homeobox 2, [RH, Score=118, Expect=2e-29]} {Dmel: FBgn0004862, bap, bagpipe, [RH, Score=115, Expect=7e-28]} {Celegans: WBGene00003377, mls-2, Mesodermal Lineage Specification, [Score=90.9, Expect=7e-20]} {Smed: dd_Smed_v6_34285_0_1, dd_Smed_v6_34285_0_1, [RH, Score=94.0, Expect=4e-23]}
33. MligTC455_34333 29 0.59 Mlig455_005256

Neo: -

Age: -

 NKX3-2 0.962 - - - 0.962 - - Mlig455_005256 {REF} {Length: 1971} {Pfam: Homeodomain [PF00046.31, score=68.8]} {Human: ENSG00000109705, NKX3-2, NK3 homeobox 2, [RH, Score=119, Expect=3e-29]} {Mouse: ENSMUSG00000049691, Nkx3-2, NK3 homeobox 2, [RH, Score=119, Expect=2e-29]} {Dmel: FBgn0004862, bap, bagpipe, [RH, Score=115, Expect=5e-28]} {Celegans: WBGene00003377, mls-2, Mesodermal Lineage Specification, [Score=89.7, Expect=2e-19]} {Smed: dd_Smed_v6_34285_0_1, dd_Smed_v6_34285_0_1, [RH, Score=94.0, Expect=4e-23]}
34. MligTC455_54106 87 1.81 Mlig455_046338, Mlig455_068234

Neo: Int S/G2/M

Age: Up-Down-Down

 PLCB1, PLCB3 0.959 - - - 0.959 - -

Mlig455_046338 {REF} {Length: 4577} {Pfam: Phosphatidylinositol-specific phospholipase C, X domain [PF00388.21, score=201.8]; Phosphatidylinositol-specific phospholipase C, Y domain [PF00387.21, score=127.9]; PH domain [PF17787.3, score=69.3]; Protein of unknown function (DUF1154) [PF06631.13, score=28.5]; Phosphoinositide-specific phospholipase C, efhand-like [PF09279.13, score=27.5]} {Human: ENSG00000182621, PLCB1, phospholipase C beta 1, [Score=797, Expect=0.0]; ENSG00000149782, PLCB3, phospholipase C beta 3, [Score=796, Expect=0.0]} {Mouse: ENSMUSG00000051177, Plcb1, phospholipase C, beta 1, [Score=801, Expect=0.0]; ENSMUSG00000024960, Plcb3, phospholipase C, beta 3, [Score=784, Expect=0.0]} {Dmel: FBgn0004611, Plc21C, Phospholipase C at 21C, [Score=418, Expect=4e-125]} {Celegans: WBGene00001177, egl-8, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8, [Score=671, Expect=0.0]} {Smed: dd_Smed_v6_3221_0_1, dd_Smed_v6_3221_0_1, [Score=702, Expect=0.0]} {RNA1509_50989} {RNA1310_17477} {RNA815_25811}

Mlig455_068234 {REF} {Length: 4646} {Pfam: Phosphatidylinositol-specific phospholipase C, X domain [PF00388.21, score=201.7]; Phosphatidylinositol-specific phospholipase C, Y domain [PF00387.21, score=127.9]; PH domain [PF17787.3, score=123.2]; Protein of unknown function (DUF1154) [PF06631.13, score=28.5]; Phosphoinositide-specific phospholipase C, efhand-like [PF09279.13, score=27.4]} {Human: ENSG00000149782, PLCB3, phospholipase C beta 3, [RH, Score=837, Expect=0.0]; ENSG00000182621, PLCB1, phospholipase C beta 1, [RH, Score=831, Expect=0.0]} {Mouse: ENSMUSG00000051177, Plcb1, phospholipase C, beta 1, [RH, Score=830, Expect=0.0]; ENSMUSG00000024960, Plcb3, phospholipase C, beta 3, [RH, Score=827, Expect=0.0]} {Dmel: FBgn0004611, Plc21C, Phospholipase C at 21C, [Score=444, Expect=7e-134]} {Celegans: WBGene00001177, egl-8, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8, [Score=684, Expect=0.0]} {Smed: dd_Smed_v6_3221_0_2, dd_Smed_v6_3221_0_2, [Score=716, Expect=0.0]} {RNA1509_50989} {RNA1310_17477, RNA1509_50989} {RNA1509_50989, RNA815_25811}
35. MligTC455_11395 28 0.59 Mlig455_048035

Neo: -

Age: -

 RASL10B 0.958 - - - 0.958 - - Mlig455_048035 {REF} {Length: 2464} {Pfam: Ras family [PF00071.24, score=93.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=38.8]; ADP-ribosylation factor family [PF00025.23, score=23.1]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [Score=148, Expect=5e-44]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [Score=149, Expect=3e-44]} {Dmel: FBgn0037326, CG14669, [Score=115, Expect=2e-30]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=81.3, Expect=9e-19]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [Score=164, Expect=2e-49]}
36. MligTC455_36899 104 2.16 Mlig455_001582, Mlig455_001590, Mlig455_001593, Mlig455_053291, Mlig455_053305, Mlig455_053940

Neo: -

Age: Up-Down-Down

 0.956 - - - - - 0.956

Mlig455_001582 {REF} {Length: 668} {NoTransDecoderORF} {RNA1509_51657} {RNA1310_25384} {RNA815_31249}

Mlig455_001590 {REF} {Length: 524} {RNA1509_51657} {RNA1310_49375} {RNA815_31249}

Mlig455_001593 {REF} {Length: 549} {NoTransDecoderORF} {RNA1509_51657} {RNA1310_25384} {RNA815_31249}

Mlig455_053291 {REF} {Length: 1527} {RNA1509_51657} {RNA1310_26692} {RNA815_38738}

Mlig455_053305 {REF} {Length: 111} {NoTransDecoderORF} {RNA1509_54652} {RNA1310_109560}

Mlig455_053940 {REF} {Length: 558} {NoTransDecoderORF} {RNA1509_51657} {RNA1310_71232} {RNA815_31249}
37. MligTC455_39957 170 3.54 Mlig455_039809

Neo: -

Age: -

Region-specific R2: 4.733

Region-enriched R2: 5.232/0.00000

 ADGB 0.956 - 0.956 - - - - Mlig455_039809 {REF} {Length: 7010} {tRNA: Ile(TAT),pseudo, score=33.4} {Pfam: Calpain family cysteine protease [PF00648.23, score=34.1]} {Human: ENSG00000118492, ADGB, androglobin, [Score=403, Expect=6e-115]} {Mouse: ENSMUSG00000050994, Adgb, androglobin, [Score=252, Expect=4e-67]} {Celegans: WBGene00000543, clp-2, CaLPain family, [Score=73.2, Expect=1e-12]} {Smed: dd_Smed_v6_10677_0_1, dd_Smed_v6_10677_0_1, [Score=253, Expect=8e-68]} {RNA1509_15950, RNA1509_59203} {RNA1310_4821, RNA1509_59203} {RNA1509_59203, RNA815_12506}
38. MligTC455_35561 23 0.47 Mlig455_058398

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_058398 {REF} {Length: 576} {NoTransDecoderORF}
39. MligTC455_25133 2937 61.18 Mlig455_010481

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.642

 0.953 - - - - - 0.953 Mlig455_010481 {REF} {Length: 3233} {RNA1509_20130, RNA1509_27443, RNA1509_30748, RNA1509_33458} {RNA1310_7129.1, RNA1509_27443, RNA1509_30748, RNA1509_33458} {RNA1509_27443, RNA1509_30748, RNA1509_33458, RNA815_2628}
40. MligTC455_34350 159 3.31 Mlig455_041282

Neo: -

Age: -

 SLC38A7 0.952 - - - - - 0.952 Mlig455_041282 {REF} {Length: 2040} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=185.0]; Tryptophan/tyrosine permease family [PF03222.15, score=21.5]} {Human: ENSG00000103042, SLC38A7, solute carrier family 38 member 7, [RH, Score=286, Expect=3e-92]} {Mouse: ENSMUSG00000036534, Slc38a7, solute carrier family 38, member 7, [RH, Score=290, Expect=9e-94]} {Smed: dd_Smed_v6_9762_0_1, dd_Smed_v6_9762_0_1, [RH, Score=236, Expect=5e-73]} {RNA1509_31669, RNA1509_45333} {RNA1310_11380, RNA1509_31669, RNA1509_45333} {RNA1509_31669, RNA1509_45333, RNA815_15209}
41. MligTC455_45112 882 18.37 Mlig455_014348

Neo: -

Age: -

Region-enriched R7: 1.536/0.01344

 PXN 0.952 - - - - - 0.952 Mlig455_014348 {REF} {Length: 1830} {Pfam: LIM domain [PF00412.24, score=202.9]} {Human: ENSG00000089159, PXN, paxillin, [RH, Score=323, Expect=2e-102]} {Mouse: ENSMUSG00000029528, Pxn, paxillin, [RH, Score=317, Expect=4e-105]} {Dmel: FBgn0041789, Pax, Paxillin, [RH, Score=322, Expect=1e-106]} {Celegans: WBGene00016197, pxl-1, Paxillin homolog 1, [RH, Score=260, Expect=6e-85]} {Smed: dd_Smed_v6_9298_0_1, dd_Smed_v6_9298_0_1, [RH, Score=259, Expect=7e-85]} {RNA1509_15432} {RNA1310_4377, RNA1509_15432} {RNA1509_15432, RNA815_1364}
42. MligTC455_34692 37 0.77 Mlig455_017379

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_017379 {REF} {Length: 579} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_10294} {RNA1310_2672} {RNA815_25099}
43. MligTC455_36099 380 7.91 Mlig455_031102

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_031102 {REF} {Length: 2608} {RNA1509_11448} {RNA1310_8565.1} {RNA815_3024}
44. MligTC455_51036 375 7.81 Mlig455_025679

Neo: -

Age: -

 RBSN 0.951 - - - - - 0.951 Mlig455_025679 {REF} {Length: 2783} {TRANSSPLICED} {Pfam: FYVE zinc finger [PF01363.23, score=58.7]; Rabenosyn Rab binding domain [PF11464.10, score=45.2]} {Human: ENSG00000131381, RBSN, rabenosyn, RAB effector, [RH, Score=202, Expect=1e-55]} {Mouse: ENSMUSG00000014550, Rbsn, rabenosyn, RAB effector, [RH, Score=208, Expect=9e-58]} {Dmel: FBgn0261064, Rbsn-5, Rabenosyn-5, [RH, Score=152, Expect=2e-39]} {Celegans: WBGene00021538, rabs-5, RABenoSyn (Trafficking protein) homolog, [RH, Score=168, Expect=7e-45]} {Smed: dd_Smed_v6_6187_0_1, dd_Smed_v6_6187_0_1, [RH, Score=154, Expect=2e-40]} {RNA1509_14444} {RNA1310_9250} {RNA815_26868}
45. MligTC455_46530 2043 42.55 Mlig455_041297, Mlig455_056197

Neo: -

Age: -

Region-enriched R3: 1.587/0.00451
Region-enriched R7: 1.477/0.02565

 SCGN 0.95 - - - - 0.950 -

Mlig455_041297 {REF} {Length: 1540} {Pfam: EF hand [PF00036.34, score=114.6]; EF-hand domain [PF13405.8, score=110.4]; EF-hand domain pair [PF13499.8, score=90.5]; EF hand [PF13202.8, score=77.9]; EF-hand domain pair [PF13833.8, score=51.3]; EF hand [PF14788.8, score=34.9]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=21.4]} {Human: ENSG00000079689, SCGN, secretagogin, EF-hand calcium binding protein, [Score=192, Expect=1e-59]; ENSG00000282830, CALB2, calbindin 2, [Score=191, Expect=4e-59]; ENSG00000172137, CALB2, calbindin 2, [Score=191, Expect=4e-59]} {Mouse: ENSMUSG00000003657, Calb2, calbindin 2, [Score=189, Expect=1e-58]} {Dmel: FBgn0004580, Cbp53E, Calbindin 53E, [Score=315, Expect=2e-107]} {Smed: dd_Smed_v6_5030_0_1, dd_Smed_v6_5030_0_1, [RH, Score=426, Expect=3e-151]} {RNA1509_32399, RNA1509_9514} {RNA1310_20609, RNA1509_32399} {RNA1509_32399, RNA815_10849}

Mlig455_056197 {REF} {Length: 1692} {Pfam: EF hand [PF00036.34, score=114.6]; EF-hand domain [PF13405.8, score=110.4]; EF-hand domain pair [PF13499.8, score=90.5]; EF hand [PF13202.8, score=77.9]; EF-hand domain pair [PF13833.8, score=51.3]; EF hand [PF14788.8, score=34.9]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=21.4]} {Human: ENSG00000079689, SCGN, secretagogin, EF-hand calcium binding protein, [Score=192, Expect=1e-59]; ENSG00000172137, CALB2, calbindin 2, [Score=191, Expect=4e-59]; ENSG00000282830, CALB2, calbindin 2, [Score=191, Expect=4e-59]} {Mouse: ENSMUSG00000003657, Calb2, calbindin 2, [Score=189, Expect=1e-58]} {Dmel: FBgn0004580, Cbp53E, Calbindin 53E, [Score=315, Expect=2e-107]} {Smed: dd_Smed_v6_5030_0_1, dd_Smed_v6_5030_0_1, [RH, Score=426, Expect=2e-151]} {RNA1509_9514} {RNA1310_20609, RNA1509_9514} {RNA1509_9514, RNA815_10849}
46. MligTC455_48490 40 0.84 Mlig455_020090

Neo: -

Age: -

 0.95 - 0.950 - - - - Mlig455_020090 {REF} {Length: 2619} {RNA1310_71062} {RNA815_63441}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA