M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22949

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22949 3351 69.82 Mlig455_015109

Neo: -

Age: Down-Up-Up

 C20orf85 Mlig455_015109 {REF} {Length: 1203} {Pfam: Normal lung function maintenance, Low in Lung Cancer 1 protein [PF14945.8, score=128.5]} {Human: ENSG00000124237, C20orf85, chromosome 20 open reading frame 85, [RH, Score=85.5, Expect=1e-21]} {Mouse: ENSMUSG00000027518, 1700021F07Rik, RIKEN cDNA 1700021F07 gene, [RH, Score=85.1, Expect=1e-21]} {Smed: dd_Smed_v6_2729_0_1, dd_Smed_v6_2729_0_1, [RH, Score=145, Expect=2e-45]} {RNA1509_16311} {RNA1310_26269} {RNA815_13848}

Cumulative graph for MligTC455_22949

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.679 6.306 0.00523 0.22718
RegionR2 0.242 6.306 0.41041 0.80378
RegionR3 0.906 6.306 0.00014 0.00611
RegionR4 0.996 6.306 0.00037 0.00471
RegionR5 0.482 6.306 0.04230 0.16592
RegionR6 0.376 6.306 0.13612 0.66272
RegionR7 -0.399 6.306 0.18030 0.77758
RegionR8 -0.922 6.306 0.01198 0.20993

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.084 6.306 0.28209 0.98183
RegenerationR2 0.179 6.306 0.51979 0.87915
RegenerationR3 -0.413 6.306 0.15711 0.58863
RegenerationR4 -0.26 6.306 0.38742 0.80575
RegenerationR5 -0.206 6.306 0.47581 0.84467
RegenerationR6 -0.676 6.306 0.02750 0.20720
RegenerationBL -0.386 6.306 0.22834 0.57852
RegenerationTP 0.429 6.306 0.20007 0.64078


Genes with expression patterns similar to MligTC455_22949

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22949 3351 69.82 Mlig455_015109

Neo: -

Age: Down-Up-Up

 C20orf85 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_015109 {REF} {Length: 1203} {Pfam: Normal lung function maintenance, Low in Lung Cancer 1 protein [PF14945.8, score=128.5]} {Human: ENSG00000124237, C20orf85, chromosome 20 open reading frame 85, [RH, Score=85.5, Expect=1e-21]} {Mouse: ENSMUSG00000027518, 1700021F07Rik, RIKEN cDNA 1700021F07 gene, [RH, Score=85.1, Expect=1e-21]} {Smed: dd_Smed_v6_2729_0_1, dd_Smed_v6_2729_0_1, [RH, Score=145, Expect=2e-45]} {RNA1509_16311} {RNA1310_26269} {RNA815_13848}
2. MligTC455_22948 1477 30.78 Mlig455_015227

Neo: -

Age: -

Region-enriched R3: 1.320/0.00028

 C20orf85 5.06 0.957 0.705 0.958 0.712 0.780 0.948 Mlig455_015227 {REF} {Length: 3065} {Pfam: Normal lung function maintenance, Low in Lung Cancer 1 protein [PF14945.8, score=128.4]} {Human: ENSG00000124237, C20orf85, chromosome 20 open reading frame 85, [RH, Score=85.1, Expect=3e-21]} {Mouse: ENSMUSG00000027518, 1700021F07Rik, RIKEN cDNA 1700021F07 gene, [RH, Score=84.7, Expect=2e-21]} {Smed: dd_Smed_v6_2729_0_1, dd_Smed_v6_2729_0_1, [RH, Score=145, Expect=3e-45]} {RNA1509_16311} {RNA1310_26269} {RNA815_13848}
3. MligTC455_46131 1863 38.82 Mlig455_017150

Neo: -

Age: logFC(26M/2M)=-0.243

 RSPH4A 1.851 - - 0.883 - - 0.968 Mlig455_017150 {REF} {Length: 2059} {TRANSSPLICED} {Pfam: Radial spokehead-like protein [PF04712.14, score=620.9]} {Human: ENSG00000111834, RSPH4A, radial spoke head component 4A, [RH, Score=464, Expect=7e-156]} {Mouse: ENSMUSG00000039552, Rsph4a, radial spoke head 4 homolog A (Chlamydomonas), [RH, Score=481, Expect=5e-163]} {Dmel: FBgn0034957, CG3121, [RH, Score=217, Expect=5e-62]} {Smed: dd_Smed_v6_3854_0_1, dd_Smed_v6_3854_0_1, [RH, Score=438, Expect=8e-149]} {RNA1509_2070} {RNA1310_12908, RNA1509_2070} {RNA1509_2070, RNA815_4463.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA