M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23136

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23136 17 0.36 Mlig455_014789, Mlig455_014846

Neo: -

Age: -

Mlig455_014789 {REF} {Length: 588} {NoTransDecoderORF} {RNA1509_8369}

Mlig455_014846 {REF} {Length: 340} {NoTransDecoderORF} {RNA1509_8369}

Cumulative graph for MligTC455_23136

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.088 0.765 0.99982 1.00000
RegionR2 -0.802 0.765 1.00000 1.00000
RegionR3 -0.345 0.765 0.99964 1.00000
RegionR4 0.747 0.765 1.00000 1.00000
RegionR5 -0.096 0.765 0.99963 1.00000
RegionR6 -0.356 0.765 1.00000 1.00000
RegionR7 -0.169 0.765 1.00000 1.00000
RegionR8 -0.067 0.765 0.99986 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.614 0.765 1.00000 1.00000
RegenerationR2 2.764 0.765 0.29162 0.73441
RegenerationR3 2.935 0.765 0.50363 0.85860
RegenerationR4 1.378 0.765 0.56179 0.89765
RegenerationR5 4.933 0.765 0.25269 0.68569
RegenerationR6 2.086 0.765 0.56573 0.84886
RegenerationBL -0.09 0.765 1.00000 1.00000
RegenerationTP 3.009 0.765 0.56820 0.94355


Genes with expression patterns similar to MligTC455_23136

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23136 17 0.36 Mlig455_014789, Mlig455_014846

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000

Mlig455_014789 {REF} {Length: 588} {NoTransDecoderORF} {RNA1509_8369}

Mlig455_014846 {REF} {Length: 340} {NoTransDecoderORF} {RNA1509_8369}
2. MligTC455_45547 1314 27.37 Mlig455_030172, Mlig455_030174, Mlig455_049258

Neo: -

Age: -

 0.97 - - - 0.970 - -

Mlig455_030172 {REF} {Length: 362} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25532} {RNA1310_40056} {RNA815_24383.2}

Mlig455_030174 {REF} {Length: 361} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25532} {RNA1310_40056} {RNA815_24383.2}

Mlig455_049258 {REF} {Length: 360} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25532} {RNA1310_40056} {RNA815_24383.2}
3. MligTC455_25273 169 3.52 Mlig455_024016

Neo: -

Age: logFC(26M/2M)=0.753

Region-enriched R5: 2.384/0.01038

 0.965 - - - - 0.965 - Mlig455_024016 {REF} {Length: 480} {TRANSSPLICED} {Pfam: Complex 1 protein (LYR family) [PF05347.17, score=56.5]; Complex1_LYR-like [PF13233.8, score=25.0]} {Dmel: FBgn0259832, CG34229, [RH, Score=54.3, Expect=3e-11]} {Smed: dd_Smed_v6_3692_0_1, dd_Smed_v6_3692_0_1, [RH, Score=47.8, Expect=5e-09]} {RNA1310_65243} {RNA815_33572}
4. MligTC455_45720 122 2.53 Mlig455_017856

Neo: -

Age: Up-Down-Down

 0.964 - - - - 0.964 - Mlig455_017856 {REF} {Length: 4797} {TRANSSPLICED} {RNA1509_41174} {RNA1310_29724} {RNA815_13192}
5. MligTC455_48381 400 8.34 Mlig455_024700

Neo: -

Age: -

Region-enriched R2: 2.412/0.00825

 PRPF18 0.963 - - - 0.963 - - Mlig455_024700 {REF} {Length: 1807} {Pfam: Prp18 domain [PF02840.17, score=177.2]; pre-mRNA processing factor 4 (PRP4) like [PF08799.13, score=36.9]} {Human: ENSG00000165630, PRPF18, pre-mRNA processing factor 18, [RH, Score=253, Expect=7e-82]} {Mouse: ENSMUSG00000039449, Prpf18, pre-mRNA processing factor 18, [RH, Score=252, Expect=3e-81]} {Dmel: FBgn0027784, Prp18, [RH, Score=255, Expect=6e-83]} {Celegans: WBGene00009320, F32B6.3, [RH, Score=199, Expect=7e-61]} {Smed: dd_Smed_v6_7260_0_1, dd_Smed_v6_7260_0_1, [RH, Score=241, Expect=4e-77]} {RNA1509_45931, RNA1509_7732} {RNA1310_23290, RNA1509_45931, RNA1509_7732} {RNA1509_45931, RNA1509_7732, RNA815_1460.1}
6. MligTC455_36620 55 1.15 Mlig455_025782, Mlig455_064407

Neo: -

Age: Up-Down-Down

Region-enriched R2: 7.390/0.00016

Regeneration-enriched R3: 6.407
Regeneration-enriched R5: 4.676

 MAB21L2 0.962 - - - - 0.962 -

Mlig455_025782 {REF} {Length: 2174} {Pfam: Mab-21 protein [PF03281.16, score=229.1]} {Human: ENSG00000181541, MAB21L2, mab-21 like 2, [RH, Score=540, Expect=0.0]; ENSG00000180660, MAB21L1, mab-21 like 1, [RH, Score=532, Expect=0.0]} {Mouse: ENSMUSG00000057777, Mab21l2, mab-21-like 2 (C. elegans), [RH, Score=541, Expect=0.0]; ENSMUSG00000056947, Mab21l1, mab-21-like 1 (C. elegans), [RH, Score=532, Expect=0.0]} {Dmel: FBgn0029003, mab-21, [RH, Score=526, Expect=0.0]} {Celegans: WBGene00003112, mab-21, Protein male abnormal 21, [RH, Score=412, Expect=2e-143]} {Smed: dd_Smed_v6_14783_0_1, dd_Smed_v6_14783_0_1, [RH, Score=462, Expect=2e-162]} {RNA1509_59733} {RNA1310_10365.2} {RNA815_9407}

Mlig455_064407 {REF} {Length: 2273} {Pfam: Mab-21 protein [PF03281.16, score=229.1]} {Human: ENSG00000181541, MAB21L2, mab-21 like 2, [RH, Score=540, Expect=0.0]; ENSG00000180660, MAB21L1, mab-21 like 1, [RH, Score=532, Expect=0.0]} {Mouse: ENSMUSG00000057777, Mab21l2, mab-21-like 2 (C. elegans), [RH, Score=541, Expect=0.0]; ENSMUSG00000056947, Mab21l1, mab-21-like 1 (C. elegans), [RH, Score=532, Expect=0.0]} {Dmel: FBgn0029003, mab-21, [RH, Score=526, Expect=0.0]} {Celegans: WBGene00003112, mab-21, Protein male abnormal 21, [RH, Score=412, Expect=2e-143]} {Smed: dd_Smed_v6_14783_0_1, dd_Smed_v6_14783_0_1, [RH, Score=462, Expect=2e-162]} {RNA1509_59733} {RNA1310_10365.2} {RNA815_9407}
7. MligTC455_51459 181 3.76 Mlig455_010077, Mlig455_063246

Neo: -

Age: Down-Up-Up

 0.961 - - - 0.961 - -

Mlig455_010077 {REF} {Length: 657} {Pfam: Tyrosine hydroxylase N terminal [PF12549.10, score=42.7]} {RNA1310_62596} {RNA815_36555}

Mlig455_063246 {REF} {Length: 828} {Pfam: Tyrosine hydroxylase N terminal [PF12549.10, score=52.3]; P-loop ATPase protein family [PF03668.17, score=21.6]} {RNA1310_62596} {RNA815_36555}
8. MligTC455_06407 25 0.52 Mlig455_055014

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_055014 {REF} {Length: 492} {NoTransDecoderORF}
9. MligTC455_25766 42 0.88 Mlig455_008785, Mlig455_008821, Mlig455_008919

Neo: -

Age: -

Region-enriched R2: 5.588/0.00166

 0.957 - - - - - 0.957

Mlig455_008785 {REF} {Length: 1744} {RNA1310_20437} {RNA815_15201}

Mlig455_008821 {REF} {Length: 2074} {RNA1310_20437} {RNA815_15201}

Mlig455_008919 {REF} {Length: 2074} {RNA1310_20437} {RNA815_15201}
10. MligTC455_44250 119 2.48 Mlig455_017680, Mlig455_025702

Neo: -

Age: -

Region-enriched R4: 3.311/0.01850
Region-enriched R5: 2.298/0.04884

Regeneration-downregulated R4: -3.713

Regeneration-depleted R4: -3.713

 0.957 - - - 0.957 - -

Mlig455_017680 {REF} {Length: 779} {TRANSSPLICED} {Pfam: Zinc ribbon domain [PF09723.12, score=18.7]} {RNA1509_30177} {RNA1310_18791} {RNA815_10594.2}

Mlig455_025702 {REF} {Length: 282} {NoTransDecoderORF}
11. MligTC455_23290 1654 34.45 Mlig455_020468

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.348

Region-enriched R5: 3.723/0.00000

 0.955 - - - 0.955 - - Mlig455_020468 {REF} {Length: 695} {TRANSSPLICED} {Pfam: PAN domain [PF14295.8, score=20.2]} {RNA1509_23905} {RNA1310_32661.1} {RNA815_18183.1}
12. MligTC455_11365 53 1.1 Mlig455_009016

Neo: -

Age: Down-Down-Up

Region-enriched R5: 2.995/0.00709

 0.953 - - - 0.953 - - Mlig455_009016 {REF} {Length: 2723} {TRANSSPLICED} {Pfam: Afadin- and alpha -actinin-Binding [PF11559.10, score=54.4]} {Mouse: ENSMUSG00000036825, Ssx2ip, synovial sarcoma, X 2 interacting protein, [RH, Score=91.7, Expect=2e-19]} {RNA1509_10737} {RNA1310_9399} {RNA815_26177}
13. MligTC455_25735 1287 26.8 Mlig455_006924, Mlig455_017938

Neo: Germline

Age: -

Region-enriched R5: 4.032/0.00000

 CCNB1 0.95 - - - 0.950 - -

Mlig455_006924 {REF} {Length: 2221} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=85.9]; Cyclin, C-terminal domain [PF02984.21, score=68.3]} {Human: ENSG00000134057, CCNB1, cyclin B1, [Score=123, Expect=6e-31]} {Mouse: ENSMUSG00000041431, Ccnb1, cyclin B1, [Score=114, Expect=2e-28]; ENSMUSG00000032218, Ccnb2, cyclin B2, [Score=111, Expect=5e-27]} {Dmel: FBgn0000405, CycB, Cyclin B, [Score=115, Expect=4e-28]} {Celegans: WBGene00000866, cyb-2.1, CYclin B, [Score=73.9, Expect=1e-14]} {RNA1509_4622} {RNA1310_12732, RNA1509_4622} {RNA1509_4622, RNA815_4626}

Mlig455_017938 {REF} {Length: 2165} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=85.9]; Cyclin, C-terminal domain [PF02984.21, score=68.0]} {Human: ENSG00000134057, CCNB1, cyclin B1, [Score=123, Expect=7e-31]} {Mouse: ENSMUSG00000041431, Ccnb1, cyclin B1, [Score=114, Expect=3e-28]; ENSMUSG00000032218, Ccnb2, cyclin B2, [Score=109, Expect=2e-26]} {Dmel: FBgn0000405, CycB, Cyclin B, [Score=115, Expect=5e-28]} {Celegans: WBGene00000866, cyb-2.1, CYclin B, [Score=73.2, Expect=3e-14]} {RNA1509_4622} {RNA1310_12732} {RNA815_4626}
14. MligTC455_42725 322 6.7 Mlig455_031037

Neo: Irradiation

Age: Down-Up-Up

 0.95 - - - 0.950 - - Mlig455_031037 {REF} {Length: 2498} {TRANSSPLICED} {Pfam: Zinc-finger of C2H2 type [PF12874.9, score=56.6]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=45.7]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=30.3]; U1 zinc finger [PF06220.14, score=26.6]} {Smed: dd_Smed_v6_1455_0_1, dd_Smed_v6_1455_0_1, [RH, Score=80.9, Expect=2e-17]} {RNA1509_27095, RNA1509_57009, RNA1509_6024} {RNA1310_10500.1, RNA1509_27095, RNA1509_57009, RNA1509_6024} {RNA1509_27095, RNA1509_57009, RNA1509_6024, RNA815_3444.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA