TomoSeq data search

Data search

Results for MligTC455_11365

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_11365

53

1.10

Mlig455_009016

Neo: -

Age: Down-Down-Up

Region-enriched R5: 2.995/0.00709

Mlig455_009016 {REF} {Length: 2723} {TRANSSPLICED} {Pfam: Afadin- and alpha -actinin-Binding [PF11559.10, score=54.4]} {Mouse: ENSMUSG00000036825, Ssx2ip, synovial sarcoma, X 2 interacting protein, [RH, Score=91.7, Expect=2e-19]} {RNA1509_10737} {RNA1310_9399} {RNA815_26177}

Cumulative graph for MligTC455_11365

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-6.845	1.35	0.06962	0.59267
RegionR2	0.041	1.35	0.92204	1.00000
RegionR3	1.143	1.35	0.25175	0.79606
RegionR4	2.291	1.35	0.07040	0.24299
RegionR5	2.995	1.35	0.00063	0.00709
RegionR6	1.143	1.35	0.33166	0.91982
RegionR7	-0.019	1.35	0.92022	1.00000
RegionR8	-0.75	1.35	0.98957	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.95	1.35	1.00000	1.00000
RegenerationR2	-0.377	1.35	0.55563	0.89617
RegenerationR3	-2.222	1.35	0.03736	0.34079
RegenerationR4	0.077	1.35	0.85675	1.00000
RegenerationR5	-1.988	1.35	0.01942	0.24066
RegenerationR6	-0.392	1.35	0.61223	0.87544
RegenerationBL	-5.749	1.35	0.01153	0.10939
RegenerationTP	-1.806	1.35	0.21166	0.65443

Genes with expression patterns similar to MligTC455_11365

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_11365	53	1.1	Mlig455_009016	Neo: - Age: Down-Down-Up Region-enriched R5: 2.995/0.00709		3	1.000	1.000	-	1.000	-	-	Mlig455_009016 {REF} {Length: 2723} {TRANSSPLICED} {Pfam: Afadin- and alpha -actinin-Binding [PF11559.10, score=54.4]} {Mouse: ENSMUSG00000036825, Ssx2ip, synovial sarcoma, X 2 interacting protein, [RH, Score=91.7, Expect=2e-19]} {RNA1509_10737} {RNA1310_9399} {RNA815_26177}
2.	MligTC455_51459	181	3.76	Mlig455_010077, Mlig455_063246	Neo: - Age: Down-Up-Up		1.696	0.746	-	-	0.950	-	-	Mlig455_010077 {REF} {Length: 657} {Pfam: Tyrosine hydroxylase N terminal [PF12549.10, score=42.7]} {RNA1310_62596} {RNA815_36555} Mlig455_063246 {REF} {Length: 828} {Pfam: Tyrosine hydroxylase N terminal [PF12549.10, score=52.3]; P-loop ATPase protein family [PF03668.17, score=21.6]} {RNA1310_62596} {RNA815_36555}
3.	MligTC455_04686	254	5.29	Mlig455_014987	Neo: - Age: -	SNUPN	0.967	-	-	-	0.967	-	-	Mlig455_014987 {REF} {Length: 3321} {TRANSSPLICED} {Pfam: Snurportin1 [PF11538.10, score=33.0]} {Human: ENSG00000169371, SNUPN, snurportin 1, [RH, Score=208, Expect=3e-64]} {Mouse: ENSMUSG00000055334, Snupn, snurportin 1, [RH, Score=199, Expect=6e-61]} {Dmel: FBgn0259199, Snup, Snurportin, [RH, Score=136, Expect=4e-37]} {Celegans: WBGene00017746, F23F1.5, Snurportin-1, [RH, Score=180, Expect=5e-54]} {Smed: dd_Smed_v6_12126_1_1, dd_Smed_v6_12126_1_1, [RH, Score=136, Expect=1e-37]} {RNA1509_25458} {RNA1310_16181, RNA1509_25458} {RNA1509_25458, RNA815_6486.1}
4.	MligTC455_27379	321	6.69	Mlig455_025230	Neo: Int S/G2/M Age: Up-Down-Up Region-enriched R5: 1.557/0.00520		0.967	-	-	-	0.967	-	-	Mlig455_025230 {REF} {Length: 4138} {TRANSSPLICED} {RNA1509_24579} {RNA1310_5913.1} {RNA815_3696}
5.	MligTC455_15392	264	5.51	Mlig455_013369	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.072		0.962	-	-	-	0.962	-	-	Mlig455_013369 {REF} {Length: 503} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_51444} {RNA815_25168}
6.	MligTC455_42163	1246	25.95	Mlig455_048416	Neo: Int S/G2/M Age: Down-Down-Up	DR1	0.959	-	-	-	0.959	-	-	Mlig455_048416 {REF} {Length: 1824} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=70.7]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=32.0]; CENP-W protein [PF15510.8, score=24.7]} {Human: ENSG00000117505, DR1, down-regulator of transcription 1, [RH, Score=132, Expect=7e-39]} {Mouse: ENSMUSG00000029265, Dr1, down-regulator of transcription 1, [RH, Score=132, Expect=5e-39]} {Dmel: FBgn0028926, NC2beta, Negative Cofactor 2beta, [RH, Score=127, Expect=6e-37]} {Celegans: WBGene00001092, dro-1, DR1 (One) transcription factor family, [RH, Score=90.1, Expect=1e-22]} {Smed: dd_Smed_v6_7479_0_1, dd_Smed_v6_7479_0_1, [RH, Score=125, Expect=2e-36]} {RNA1509_14024, RNA1509_24840, RNA1509_26197, RNA1509_7108} {RNA1310_37108, RNA1509_14024, RNA1509_24840, RNA1509_26197} {RNA1509_14024, RNA1509_24840, RNA1509_26197, RNA815_17293}
7.	MligTC455_45547	1314	27.37	Mlig455_030172, Mlig455_030174, Mlig455_049258	Neo: - Age: -		0.958	-	-	-	0.958	-	-	Mlig455_030172 {REF} {Length: 362} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25532} {RNA1310_40056} {RNA815_24383.2} Mlig455_030174 {REF} {Length: 361} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25532} {RNA1310_40056} {RNA815_24383.2} Mlig455_049258 {REF} {Length: 360} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25532} {RNA1310_40056} {RNA815_24383.2}
8.	MligTC455_53101	861	17.94	Mlig455_002632	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.796		0.955	-	-	-	0.955	-	-	Mlig455_002632 {REF} {Length: 2212} {TRANSSPLICED} {Pfam: Ragulator complex protein LAMTOR5 [PF16672.7, score=64.8]; Roadblock/LC7 domain [PF03259.19, score=24.2]} {RNA1509_23665, RNA1509_7057} {RNA1310_14581.1, RNA1509_23665} {RNA1509_23665, RNA815_27600.1}
9.	MligTC455_23136	17	0.36	Mlig455_014789, Mlig455_014846	Neo: - Age: -		0.953	-	-	-	0.953	-	-	Mlig455_014789 {REF} {Length: 588} {NoTransDecoderORF} {RNA1509_8369} Mlig455_014846 {REF} {Length: 340} {NoTransDecoderORF} {RNA1509_8369}
10.	MligTC455_24049	236	4.92	Mlig455_006885	Neo: - Age: - Region-enriched R3: 2.719/0.01087 Region-enriched R5: 2.215/0.02455	KLHDC3	0.952	-	-	-	0.952	-	-	Mlig455_006885 {REF} {Length: 7075} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13418.8, score=88.6]; Kelch motif [PF01344.27, score=80.4]; Galactose oxidase, central domain [PF13415.8, score=71.6]; Kelch motif [PF13854.8, score=65.8]; Kelch motif [PF13964.8, score=65.2]; Kelch motif [PF07646.17, score=59.0]} {Human: ENSG00000124702, KLHDC3, kelch domain containing 3, [Score=60.1, Expect=5e-09]; ENSG00000037637, FBXO42, F-box protein 42, [Score=58.9, Expect=2e-08]; ENSG00000099949, LZTR1, leucine zipper like transcription regulator 1, [Score=58.2, Expect=4e-08]} {Mouse: ENSMUSG00000063576, Klhdc3, kelch domain containing 3, [Score=63.2, Expect=3e-10]} {Dmel: FBgn0034704, CG6758, [Score=62.8, Expect=7e-10]} {Celegans: WBGene00009978, F53E4.1, [Score=74.3, Expect=6e-14]} {Smed: dd_Smed_v6_6387_0_1, dd_Smed_v6_6387_0_1, [RH, Score=144, Expect=4e-37]} {RNA1509_22010, RNA1509_27246, RNA1509_39071, RNA1509_39415, RNA1509_50136, RNA1509_52792} {RNA1310_9074, RNA1509_22010, RNA1509_27246, RNA1509_39071, RNA1509_39415, RNA1509_50136, RNA1509_52792} {RNA1509_22010, RNA1509_27246, RNA1509_39071, RNA1509_39415, RNA1509_50136, RNA1509_52792, RNA815_10593}
11.	MligTC455_25110	2841	59.18	Mlig455_013097, Mlig455_013190	Neo: Germline Age: - Region-specific R5: 4.777 Region-enriched R5: 4.391/0.00000 Region-enriched R6: 2.134/0.02217		0.951	-	-	-	0.951	-	-	Mlig455_013097 {REF} {Length: 2671} {RNA1509_11937, RNA1509_17776, RNA1509_2109, RNA1509_33659} {RNA1310_50308, RNA1509_11937, RNA1509_17776, RNA1509_33659} {RNA1509_11937, RNA1509_17776, RNA1509_33659, RNA815_8058.1} Mlig455_013190 {REF} {Length: 2399} {RNA1509_2109} {RNA1310_50308, RNA1509_2109} {RNA1509_2109, RNA815_8058.1}
12.	MligTC455_42725	322	6.7	Mlig455_031037	Neo: Irradiation Age: Down-Up-Up		0.95	-	-	-	0.950	-	-	Mlig455_031037 {REF} {Length: 2498} {TRANSSPLICED} {Pfam: Zinc-finger of C2H2 type [PF12874.9, score=56.6]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=45.7]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=30.3]; U1 zinc finger [PF06220.14, score=26.6]} {Smed: dd_Smed_v6_1455_0_1, dd_Smed_v6_1455_0_1, [RH, Score=80.9, Expect=2e-17]} {RNA1509_27095, RNA1509_57009, RNA1509_6024} {RNA1310_10500.1, RNA1509_27095, RNA1509_57009, RNA1509_6024} {RNA1509_27095, RNA1509_57009, RNA1509_6024, RNA815_3444.1}

Berezikov Lab - 2020-2021 © ERIBA