M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23161

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23161 308 6.41 Mlig455_008114

Neo: -

Age: logFC(26M/2M)=-0.619

Regeneration-downregulated R2: -2.232

Regeneration-depleted R2: -2.232

 Mlig455_008114 {REF} {Length: 1229} {TRANSSPLICED} {RNA1509_26396} {RNA1310_29311} {RNA815_12314}

Cumulative graph for MligTC455_23161

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.037 2.945 0.45997 1.00000
RegionR2 0.65 2.945 0.21093 0.57521
RegionR3 -0.373 2.945 0.41328 0.93869
RegionR4 -1.15 2.945 0.03249 0.14371
RegionR5 -1.083 2.945 0.02106 0.10071
RegionR6 0.041 2.945 0.92678 1.00000
RegionR7 1.334 2.945 0.00754 0.14448
RegionR8 1.619 2.945 0.00838 0.17024

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.979 2.945 0.24491 0.96633
RegenerationR2 -2.232 2.945 0.00000 0.00074 Specific for R2: -2.232
RegenerationR3 -0.751 2.945 0.14152 0.56765
RegenerationR4 -0.872 2.945 0.09470 0.47915
RegenerationR5 -1.045 2.945 0.04656 0.34990
RegenerationR6 -1.113 2.945 0.03376 0.23003
RegenerationBL -2.226 2.945 0.00080 0.01968
RegenerationTP -1.095 2.945 0.05247 0.37479


Genes with expression patterns similar to MligTC455_23161

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23161 308 6.41 Mlig455_008114

Neo: -

Age: logFC(26M/2M)=-0.619

Regeneration-downregulated R2: -2.232

Regeneration-depleted R2: -2.232

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_008114 {REF} {Length: 1229} {TRANSSPLICED} {RNA1509_26396} {RNA1310_29311} {RNA815_12314}
2. MligTC455_43755 1306 27.21 Mlig455_010280

Neo: -

Age: -

Region-enriched R7: 1.117/0.04060

Regeneration-downregulated BL: -2.741

Regeneration-depleted BL: -2.741

 SMTN 1.86 - - - 0.894 - 0.966 Mlig455_010280 {REF} {Length: 2087} {Pfam: Calponin homology (CH) domain [PF00307.33, score=83.4]; Smoothelin cytoskeleton protein [PF12510.10, score=35.2]; CAMSAP CH domain [PF11971.10, score=32.4]} {Human: ENSG00000183963, SMTN, smoothelin, [RH, Score=168, Expect=2e-45]} {Mouse: ENSMUSG00000020439, Smtn, smoothelin, [RH, Score=162, Expect=2e-43]} {Dmel: FBgn0085446, CG34417, [RH, Score=160, Expect=7e-43]} {Celegans: WBGene00020530, T15B12.1, [RH, Score=144, Expect=4e-39]} {Smed: dd_Smed_v6_2554_0_1, dd_Smed_v6_2554_0_1, [RH, Score=176, Expect=2e-54]} {RNA1509_21748} {RNA1310_16112} {RNA815_14550}
3. MligTC455_28540 358 7.46 Mlig455_048261

Neo: -

Age: logFC(26M/2M)=-0.449

 SEC14L1 1.731 - 0.773 - 0.958 - - Mlig455_048261 {REF} {Length: 3272} {Pfam: CRAL/TRIO domain [PF00650.22, score=88.1]; CRAL/TRIO, N-terminal domain [PF03765.17, score=29.5]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.3]} {Human: ENSG00000129657, SEC14L1, SEC14 like lipid binding 1, [Score=62.8, Expect=5e-10]} {Mouse: ENSMUSG00000020823, Sec14l1, SEC14-like lipid binding 1, [Score=62.8, Expect=4e-10]} {Dmel: FBgn0031814, retm, real-time, [Score=65.9, Expect=2e-11]} {Celegans: WBGene00011962, T23G5.2, CRAL-TRIO domain-containing protein T23G5.2, [Score=64.7, Expect=4e-11]} {Smed: dd_Smed_v6_1619_0_1, dd_Smed_v6_1619_0_1, [Score=297, Expect=1e-98]} {RNA1509_15886} {RNA1310_19297, RNA1509_15886} {RNA1509_15886, RNA815_8981}
4. MligTC455_39409 684 14.26 Mlig455_066730, Mlig455_066744

Neo: -

Age: logFC(26M/2M)=0.461

 ANK2 1.682 - - - - 0.731 0.951

Mlig455_066730 {REF} {Length: 6677} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=428.2]; Ankyrin repeats (3 copies) [PF12796.9, score=416.7]; Ankyrin repeats (many copies) [PF13857.8, score=272.9]; Ankyrin repeat [PF13606.8, score=250.8]; Ankyrin repeat [PF00023.32, score=209.0]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=162, Expect=2e-39]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=159, Expect=3e-38]; ENSG00000139645, ANKRD52, ankyrin repeat domain 52, [Score=158, Expect=2e-38]} {Mouse: ENSMUSG00000014498, Ankrd52, ankyrin repeat domain 52, [Score=160, Expect=3e-39]; ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=159, Expect=2e-38]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=157, Expect=3e-38]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=168, Expect=1e-41]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=169, Expect=7e-42]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=181, Expect=1e-46]} {RNA1509_15876, RNA1509_25981, RNA1509_2870, RNA1509_59048} {RNA1310_604.1, RNA1509_25981, RNA1509_2870, RNA1509_59048} {RNA1509_25981, RNA1509_2870, RNA1509_59048, RNA815_475}

Mlig455_066744 {REF} {Length: 6677} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=477.8]; Ankyrin repeats (3 copies) [PF12796.9, score=475.9]; Ankyrin repeats (many copies) [PF13857.8, score=301.9]; Ankyrin repeat [PF13606.8, score=287.5]; Ankyrin repeat [PF00023.32, score=236.6]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=163, Expect=7e-40]; ENSG00000151150, ANK3, ankyrin 3, [Score=162, Expect=2e-39]; ENSG00000029534, ANK1, ankyrin 1, [Score=160, Expect=1e-38]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=159, Expect=3e-38]; ENSG00000139645, ANKRD52, ankyrin repeat domain 52, [Score=157, Expect=5e-38]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=162, Expect=1e-39]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=162, Expect=1e-39]; ENSMUSG00000014498, Ankrd52, ankyrin repeat domain 52, [Score=160, Expect=4e-39]; ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=160, Expect=1e-38]; ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=154, Expect=2e-37]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=169, Expect=9e-42]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=169, Expect=9e-42]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=181, Expect=3e-46]} {RNA1509_15876} {RNA1310_604.1, RNA1509_15876} {RNA1509_15876, RNA815_475}
5. MligTC455_15228 38 0.8 Mlig455_023876

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_023876 {REF} {Length: 827} {RNA1509_31914} {RNA1310_102040} {RNA815_22831}
6. MligTC455_26976 207 4.3 Mlig455_036300

Neo: -

Age: -

 TSPAN19 0.965 - - - - - 0.965 Mlig455_036300 {REF} {Length: 1765} {Pfam: Tetraspanin family [PF00335.22, score=76.9]} {Human: ENSG00000231738, TSPAN19, tetraspanin 19, [Score=55.8, Expect=1e-08]} {Mouse: ENSMUSG00000025351, Cd63, CD63 antigen, [Score=58.5, Expect=9e-10]} {Celegans: WBGene00023491, tsp-21, Tetraspanin, [Score=45.8, Expect=1e-05]} {Smed: dd_Smed_v6_854_1_1, dd_Smed_v6_854_1_1, [RH, Score=114, Expect=3e-30]} {RNA1509_5067} {RNA1310_22887} {RNA815_9455}
7. MligTC455_37514 135 2.82 Mlig455_017094

Neo: -

Age: -

 SLC7A2 0.962 - - - - - 0.962 Mlig455_017094 {REF} {Length: 3449} {TRANSSPLICED} {Pfam: Amino acid permease [PF13520.8, score=166.5]; Amino acid permease [PF00324.23, score=101.3]; C-terminus of AA_permease [PF13906.8, score=75.6]} {Human: ENSG00000003989, SLC7A2, solute carrier family 7 member 2, [RH, Score=555, Expect=0.0]} {Mouse: ENSMUSG00000031596, Slc7a2, solute carrier family 7 (cationic amino acid transporter, y+ system), member 2, [Score=554, Expect=0.0]; ENSMUSG00000041313, Slc7a1, solute carrier family 7 (cationic amino acid transporter, y+ system), member 1, [Score=549, Expect=0.0]} {Dmel: FBgn0036764, CG5535, [Score=511, Expect=3e-174]} {Celegans: WBGene00017747, F23F1.6, [Score=361, Expect=1e-116]} {Smed: dd_Smed_v6_16390_0_1, dd_Smed_v6_16390_0_1, [Score=451, Expect=6e-154]} {RNA1509_53203} {RNA1310_13785, RNA1509_53203} {RNA1509_53203, RNA815_48762}
8. MligTC455_53343 164 3.42 Mlig455_005711

Neo: -

Age: -

 0.955 - - 0.955 - - - Mlig455_005711 {REF} {Length: 2226} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=59.9]} {RNA1509_5566} {RNA1310_28834} {RNA815_8475}
9. MligTC455_31522 488 10.16 Mlig455_006598

Neo: -

Age: Down-Up-Down

 0.954 - - - - - 0.954 Mlig455_006598 {REF} {Length: 8383} {RNA1509_25311} {RNA1310_2138} {RNA815_5558.1}
10. MligTC455_00722 98 2.04 Mlig455_029527

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_029527 {REF} {Length: 63} {NoTransDecoderORF}
11. MligTC455_34282 11497 239.51 Mlig455_058016, Mlig455_058207

Neo: -

Age: -

 CSRP2 0.95 - - - - - 0.950

Mlig455_058016 {REF} {Length: 1598} {Pfam: LIM domain [PF00412.24, score=84.0]} {Human: ENSG00000175183, CSRP2, cysteine and glycine rich protein 2, [RH, Score=172, Expect=2e-54]; ENSG00000129170, CSRP3, cysteine and glycine rich protein 3, [RH, Score=164, Expect=6e-51]} {Mouse: ENSMUSG00000020186, Csrp2, cysteine and glycine-rich protein 2, [RH, Score=171, Expect=4e-54]; ENSMUSG00000030470, Csrp3, cysteine and glycine-rich protein 3, [RH, Score=166, Expect=6e-52]} {Dmel: FBgn0014863, Mlp84B, Muscle LIM protein at 84B, [RH, Score=179, Expect=3e-54]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [RH, Score=138, Expect=1e-42]} {Smed: dd_Smed_v6_373_0_1, dd_Smed_v6_373_0_1, [RH, Score=226, Expect=4e-76]} {RNA1509_5127, RNA1509_788} {RNA1310_19220, RNA1509_5127} {RNA1509_5127, RNA815_7609.1}

Mlig455_058207 {REF} {Length: 1641} {Pfam: LIM domain [PF00412.24, score=84.0]} {Human: ENSG00000175183, CSRP2, cysteine and glycine rich protein 2, [RH, Score=172, Expect=2e-54]; ENSG00000129170, CSRP3, cysteine and glycine rich protein 3, [RH, Score=164, Expect=6e-51]} {Mouse: ENSMUSG00000020186, Csrp2, cysteine and glycine-rich protein 2, [RH, Score=171, Expect=4e-54]; ENSMUSG00000030470, Csrp3, cysteine and glycine-rich protein 3, [RH, Score=166, Expect=6e-52]} {Dmel: FBgn0014863, Mlp84B, Muscle LIM protein at 84B, [RH, Score=179, Expect=3e-54]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [RH, Score=138, Expect=1e-42]} {Smed: dd_Smed_v6_373_0_1, dd_Smed_v6_373_0_1, [RH, Score=226, Expect=4e-76]} {RNA1509_788} {RNA1310_19220, RNA1509_788} {RNA1509_788, RNA815_7609.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA