M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23180

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23180 59 1.22 Mlig455_018797

Neo: -

Age: -

 RPS18 Mlig455_018797 {REF} {Length: 472} {TRANSSPLICED} {Pfam: Ribosomal protein S13/S18 [PF00416.24, score=155.0]} {Human: ENSG00000231500, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000235650, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000096150, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000226225, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000223367, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]} {Mouse: ENSMUSG00000008668, Rps18, ribosomal protein S18, [RH, Score=215, Expect=1e-72]; ENSMUSG00000113061, Gm11361, predicted pseudogene 11361, [RH, Score=213, Expect=1e-71]; ENSMUSG00000069117, Gm10260, predicted gene 10260, [RH, Score=211, Expect=5e-71]} {Dmel: FBgn0010411, RpS18, Ribosomal protein S18, [RH, Score=213, Expect=5e-72]} {Celegans: WBGene00004487, rps-18, Ribosomal Protein, Small subunit, [RH, Score=201, Expect=4e-67]} {Smed: dd_Smed_v6_99_0_1, dd_Smed_v6_99_0_1, [RH, Score=202, Expect=1e-67]} {RNA1509_19061} {RNA1310_59111.1} {RNA815_18233.1}

Cumulative graph for MligTC455_23180

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.59 1.436 0.99969 1.00000
RegionR2 0.076 1.436 0.50333 0.88255
RegionR3 -1.15 1.436 0.99969 1.00000
RegionR4 2.871 1.436 0.26464 0.56894
RegionR5 1.844 1.436 0.21544 0.51453
RegionR6 -0.977 1.436 0.99970 1.00000
RegionR7 1.666 1.436 0.28318 0.91657
RegionR8 -1.739 1.436 0.99994 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.856 1.436 1.00000 1.00000
RegenerationR2 2.015 1.436 0.02665 0.27037
RegenerationR3 4.234 1.436 0.00709 0.15369
RegenerationR4 2.596 1.436 0.06467 0.40576
RegenerationR5 1.348 1.436 0.25887 0.69055
RegenerationR6 3.569 1.436 0.05263 0.28725
RegenerationBL 2.027 1.436 0.24703 0.60183
RegenerationTP 1.192 1.436 0.61873 0.97171


Genes with expression patterns similar to MligTC455_23180

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23180 59 1.22 Mlig455_018797

Neo: -

Age: -

 RPS18 3 - - - 1.000 1.000 1.000 Mlig455_018797 {REF} {Length: 472} {TRANSSPLICED} {Pfam: Ribosomal protein S13/S18 [PF00416.24, score=155.0]} {Human: ENSG00000231500, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000235650, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000096150, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000226225, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]; ENSG00000223367, RPS18, ribosomal protein S18, [RH, Score=215, Expect=2e-72]} {Mouse: ENSMUSG00000008668, Rps18, ribosomal protein S18, [RH, Score=215, Expect=1e-72]; ENSMUSG00000113061, Gm11361, predicted pseudogene 11361, [RH, Score=213, Expect=1e-71]; ENSMUSG00000069117, Gm10260, predicted gene 10260, [RH, Score=211, Expect=5e-71]} {Dmel: FBgn0010411, RpS18, Ribosomal protein S18, [RH, Score=213, Expect=5e-72]} {Celegans: WBGene00004487, rps-18, Ribosomal Protein, Small subunit, [RH, Score=201, Expect=4e-67]} {Smed: dd_Smed_v6_99_0_1, dd_Smed_v6_99_0_1, [RH, Score=202, Expect=1e-67]} {RNA1509_19061} {RNA1310_59111.1} {RNA815_18233.1}
2. MligTC455_10848 46 0.96 Mlig455_042721

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_042721 {REF} {Length: 589} {TRANSSPLICED} {RNA1509_14772} {RNA1310_8010} {RNA815_3364.2}
3. MligTC455_10849 55 1.14 Mlig455_042823

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_042823 {REF} {Length: 479} {NoTransDecoderORF}
4. MligTC455_23400 7 0.16 Mlig455_026159

Neo: -

Age: -

 AVPR1B 0.961 - - - - 0.961 - Mlig455_026159 {REF} {Length: 3115} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=105.2]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=29.5]} {Human: ENSG00000198049, AVPR1B, arginine vasopressin receptor 1B, [Score=114, Expect=8e-27]; ENSG00000187258, NPSR1, neuropeptide S receptor 1, [Score=110, Expect=2e-25]} {Mouse: ENSMUSG00000043659, Npsr1, neuropeptide S receptor 1, [Score=110, Expect=1e-25]; ENSMUSG00000020123, Avpr1a, arginine vasopressin receptor 1A, [Score=107, Expect=2e-24]} {Dmel: FBgn0039396, CCAP-R, Crustacean cardioactive peptide receptor, [Score=118, Expect=7e-28]} {Celegans: WBGene00015646, mlt-10, [Score=171, Expect=5e-45]} {Smed: dd_Smed_v6_35162_0_1, dd_Smed_v6_35162_0_1, [Score=110, Expect=4e-26]} {RNA1509_52929} {RNA1310_25125} {RNA815_32669}
5. MligTC455_14331 9 0.18 Mlig455_036281

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_036281 {REF} {Length: 831} {NoTransDecoderORF} {RNA1509_35447} {RNA1310_64055} {RNA815_50141}
6. MligTC455_21337 11 0.23 Mlig455_047767

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_047767 {REF} {Length: 4066} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_2938.1} {RNA815_14343.2}
7. MligTC455_19383 82 1.71 Mlig455_032414

Neo: Germline

Age: -

Region-enriched R4: 3.681/0.00002

 GABBR2 0.951 - - - - 0.951 - Mlig455_032414 {REF} {Length: 3517} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=167.6]; Receptor family ligand binding region [PF01094.30, score=72.5]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=303, Expect=3e-88]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=303, Expect=1e-88]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=338, Expect=1e-99]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=298, Expect=2e-87]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=159, Expect=9e-45]} {RNA1509_48457} {RNA1310_18461} {RNA815_14519}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA