Data search
Results for MligTC455_23613
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_23613 | 70 | 1.45 | Mlig455_006682 | Neo: - Age: - |
Mlig455_006682 {REF} {Length: 3166} {NoTransDecoderORF} {RNA1509_50385} {RNA1310_46920, RNA1509_50385} {RNA1509_50385, RNA815_50336} |
Cumulative graph for MligTC455_23613
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 5.707 | 1.295 | 0.02424 | 0.41566 | |
| RegionR2 | -0.544 | 1.295 | 0.84108 | 1.00000 | |
| RegionR3 | -2.229 | 1.295 | 0.99893 | 1.00000 | |
| RegionR4 | 0.502 | 1.295 | 0.62834 | 0.93672 | |
| RegionR5 | 0.943 | 1.295 | 0.31255 | 0.65147 | |
| RegionR6 | -0.157 | 1.295 | 0.73918 | 1.00000 | |
| RegionR7 | -2.674 | 1.295 | 1.00000 | 1.00000 | |
| RegionR8 | -1.548 | 1.295 | 1.00000 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -8.021 | 1.295 | 0.10842 | 0.83103 | |
| RegenerationR2 | 1.012 | 1.295 | 0.40939 | 0.81994 | |
| RegenerationR3 | 2.324 | 1.295 | 0.19419 | 0.62981 | |
| RegenerationR4 | 1.232 | 1.295 | 0.37934 | 0.80062 | |
| RegenerationR5 | -0.148 | 1.295 | 0.81008 | 0.99142 | |
| RegenerationR6 | 1.307 | 1.295 | 0.43896 | 0.76307 | |
| RegenerationBL | 1.929 | 1.295 | 0.36072 | 0.72971 | |
| RegenerationTP | -0.529 | 1.295 | 0.82962 | 1.00000 |
Genes with expression patterns similar to MligTC455_23613
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_23613 | 70 | 1.45 | Mlig455_006682 | Neo: - Age: - |
3 | - | - | - | 1.000 | 1.000 | 1.000 | Mlig455_006682 {REF} {Length: 3166} {NoTransDecoderORF} {RNA1509_50385} {RNA1310_46920, RNA1509_50385} {RNA1509_50385, RNA815_50336} | |
| 2. | MligTC455_45991 | 443 | 9.24 | Mlig455_037183, Mlig455_043981, Mlig455_052335 | Neo: - |
1.718 | - | - | - | 0.765 | 0.953 | - | Mlig455_037183 {REF} {Length: 1448} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741} Mlig455_043981 {REF} {Length: 1986} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741} Mlig455_052335 {REF} {Length: 1323} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.5]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741} |
|
| 3. | MligTC455_22792 | 813 | 16.94 | Mlig455_006911 | Neo: - |
PPP1R10 | 0.966 | - | - | - | - | 0.966 | - | Mlig455_006911 {REF} {Length: 4431} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=34.5} {Pfam: TFIIS helical bundle-like domain [PF08711.13, score=20.9]; Negative regulator of genetic competence (MecA) [PF05389.14, score=18.7]} {Human: ENSG00000204569, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]; ENSG00000230995, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]; ENSG00000238104, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]; ENSG00000235291, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]; ENSG00000206489, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]; ENSG00000227804, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]; ENSG00000231737, PPP1R10, protein phosphatase 1 regulatory subunit 10, [RH, Score=98.6, Expect=2e-20]} {Mouse: ENSMUSG00000039220, Ppp1r10, protein phosphatase 1, regulatory subunit 10, [RH, Score=95.1, Expect=2e-19]} {Dmel: FBgn0053526, PNUTS, [RH, Score=87.4, Expect=4e-17]} {Smed: dd_Smed_v6_3726_0_1, dd_Smed_v6_3726_0_1, [Score=93.2, Expect=2e-19]} {RNA1509_35861, RNA1509_3759, RNA1509_41300} {RNA1310_6625, RNA1509_35861, RNA1509_41300} {RNA1509_35861, RNA1509_41300, RNA815_5489} |
| 4. | MligTC455_02585 | 10 | 0.22 | Mlig455_027270 | Neo: - Age: - |
0.961 | - | - | - | - | - | 0.961 | Mlig455_027270 {REF} {Length: 834} {RNA1509_15660} {RNA1310_28914} {RNA815_32453} | |
| 5. | MligTC455_42193 | 205 | 4.28 | Mlig455_014809 | Neo: - |
0.96 | - | - | - | - | 0.960 | - | Mlig455_014809 {REF} {Length: 1752} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=40.7]; Capsular polysaccharide synthesis protein [PF05704.14, score=19.2]} {Smed: dd_Smed_v6_11922_0_1, dd_Smed_v6_11922_0_1, [Score=113, Expect=2e-29]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321} | |
| 6. | MligTC455_44850 | 2381 | 49.6 | Mlig455_014259 | Neo: - Age: logFC(26M/2M)=-0.355 |
LEXM | 0.952 | - | - | - | - | 0.952 | - | Mlig455_014259 {REF} {Length: 2739} {Human: ENSG00000162398, LEXM, lymphocyte expansion molecule, [RH, Score=169, Expect=2e-47]} {Mouse: ENSMUSG00000054362, Lexm, lymphocyte expansion molecule, [RH, Score=173, Expect=3e-49]} {Smed: dd_Smed_v6_10776_0_1, dd_Smed_v6_10776_0_1, [RH, Score=361, Expect=3e-122]} {RNA1509_2011} {RNA1310_14442.1, RNA1509_2011} {RNA1509_2011, RNA815_5377} |
| 7. | MligTC455_17505 | 844 | 17.58 | Mlig455_015141 | Neo: - Age: Down-Down-Up, logFC(26M/2M)=1.515 Region-enriched R4: 1.911/0.01373 |
0.951 | - | - | - | - | 0.951 | - | Mlig455_015141 {REF} {Length: 2900} {TRANSSPLICED} {RNA1509_40438, RNA1509_53510} {RNA1310_5427, RNA1509_40438} {RNA1509_40438, RNA815_2140.1} |
Berezikov Lab - 2020-2021 © ERIBA