TomoSeq data search

Data search

Results for MligTC455_45991

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_45991

443

9.24

Mlig455_037183, Mlig455_043981, Mlig455_052335

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.420

Mlig455_037183 {REF} {Length: 1448} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}

Mlig455_043981 {REF} {Length: 1986} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}

Mlig455_052335 {REF} {Length: 1323} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.5]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}

Cumulative graph for MligTC455_45991

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.303	3.673	0.84934	1.00000
RegionR2	0.738	3.673	0.27594	0.66136
RegionR3	0.004	3.673	0.99561	1.00000
RegionR4	-0.599	3.673	0.37905	0.70311
RegionR5	-0.283	3.673	0.59001	0.94794
RegionR6	-0.108	3.673	0.85251	1.00000
RegionR7	-0.028	3.673	0.96967	1.00000
RegionR8	0.58	3.673	0.52093	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.103	3.673	0.23923	0.96582
RegenerationR2	0.453	3.673	0.40022	0.81448
RegenerationR3	1.216	3.673	0.05121	0.39218
RegenerationR4	1.123	3.673	0.09140	0.47224
RegenerationR5	0.613	3.673	0.30108	0.72821
RegenerationR6	0.493	3.673	0.44165	0.76522
RegenerationBL	0.009	3.673	0.99066	1.00000
RegenerationTP	-0.208	3.673	0.79554	1.00000

Genes with expression patterns similar to MligTC455_45991

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_45991	443	9.24	Mlig455_037183, Mlig455_043981, Mlig455_052335	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.420		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_037183 {REF} {Length: 1448} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741} Mlig455_043981 {REF} {Length: 1986} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741} Mlig455_052335 {REF} {Length: 1323} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.5]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}
2.	MligTC455_29761	117	2.44	Mlig455_013621	Neo: - Age: - Region-enriched R4: 3.464/0.00365	BEST1	2.634	-	0.953	-	0.756	0.925	-	Mlig455_013621 {REF} {Length: 8372} {TRANSSPLICED} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=182.0]} {Human: ENSG00000167995, BEST1, bestrophin 1, [Score=124, Expect=1e-29]; ENSG00000142959, BEST4, bestrophin 4, [Score=124, Expect=5e-30]; ENSG00000127325, BEST3, bestrophin 3, [Score=118, Expect=1e-27]} {Mouse: ENSMUSG00000037418, Best1, bestrophin 1, [Score=143, Expect=1e-36]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=228, Expect=3e-66]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=173, Expect=2e-47]} {Smed: dd_Smed_v6_8073_0_1, dd_Smed_v6_8073_0_1, [Score=355, Expect=8e-118]} {RNA1509_54677} {RNA1310_17634} {RNA815_11997}
3.	MligTC455_37381	849	17.7	Mlig455_023394	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.979		2.538	-	0.955	-	-	0.849	0.734	Mlig455_023394 {REF} {Length: 1607} {Pfam: Cytochrome P450 [PF00067.24, score=23.4]} {RNA1509_34868} {RNA1310_14317} {RNA815_5514}
4.	MligTC455_20959	140	2.92	Mlig455_047580	Neo: - Age: -		1.775	-	-	-	0.812	0.963	-	Mlig455_047580 {REF} {Length: 2548} {RNA1509_41536} {RNA1310_20925} {RNA815_17486.1}
5.	MligTC455_23613	70	1.45	Mlig455_006682	Neo: - Age: -		1.718	-	-	-	0.765	0.953	-	Mlig455_006682 {REF} {Length: 3166} {NoTransDecoderORF} {RNA1509_50385} {RNA1310_46920, RNA1509_50385} {RNA1509_50385, RNA815_50336}
6.	MligTC455_47731	19	0.4	Mlig455_061021	Neo: - Age: -		0.978	-	-	-	0.978	-	-	Mlig455_061021 {REF} {Length: 1271} {NoTransDecoderORF} {RNA1509_46050} {RNA1310_22065.1}
7.	MligTC455_19798	1529	31.86	Mlig455_054303	Neo: - Age: logFC(26M/2M)=-0.360 Region-enriched R4: 1.481/0.00175	B9D1	0.972	-	-	-	-	0.972	-	Mlig455_054303 {REF} {Length: 1067} {TRANSSPLICED} {Pfam: Ciliary basal body-associated, B9 protein [PF07162.13, score=125.4]} {Human: ENSG00000108641, B9D1, B9 domain containing 1, [RH, Score=206, Expect=4e-67]} {Mouse: ENSMUSG00000001039, B9d1, B9 protein domain 1, [RH, Score=204, Expect=1e-66]} {Dmel: FBgn0038342, B9d1, [RH, Score=111, Expect=3e-30]} {Smed: dd_Smed_v6_5678_0_1, dd_Smed_v6_5678_0_1, [RH, Score=192, Expect=1e-62]} {RNA1509_9510} {RNA1310_32143, RNA1509_9510} {RNA1509_9510, RNA815_15669}
8.	MligTC455_27887	63	1.32	Mlig455_005896	Neo: - Age: Down-Down-Up		0.966	-	0.966	-	-	-	-	Mlig455_005896 {REF} {Length: 2030} {TRANSSPLICED} {Pfam: AP-5 complex subunit sigma-1 [PF15001.8, score=43.7]} {RNA1509_48400} {RNA1310_26125} {RNA815_7192}
9.	MligTC455_42193	205	4.28	Mlig455_014809	Neo: - Age: Down-Up-Down, logFC(26M/2M)=1.778		0.963	-	-	-	-	0.963	-	Mlig455_014809 {REF} {Length: 1752} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=40.7]; Capsular polysaccharide synthesis protein [PF05704.14, score=19.2]} {Smed: dd_Smed_v6_11922_0_1, dd_Smed_v6_11922_0_1, [Score=113, Expect=2e-29]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}
10.	MligTC455_25004	370	7.7	Mlig455_049927	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.569 Region-enriched R4: 2.246/0.03082	MAP3K19	0.959	-	-	-	-	0.959	-	Mlig455_049927 {REF} {Length: 6523} {Pfam: Protein kinase domain [PF00069.27, score=304.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=256.2]; Ankyrin repeats (3 copies) [PF12796.9, score=74.0]; Ankyrin repeats (many copies) [PF13857.8, score=51.9]; Ankyrin repeat [PF13606.8, score=49.2]; Ankyrin repeats (many copies) [PF13637.8, score=36.9]; Fungal protein kinase [PF17667.3, score=34.3]; Kinase-like [PF14531.8, score=29.8]; Ankyrin repeat [PF00023.32, score=26.2]; Ternary complex associated domain 9 [PF19974.1, score=24.1]; ABC1 atypical kinase-like domain [PF03109.18, score=22.3]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=140, Expect=3e-34]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=140, Expect=2e-34]} {Dmel: FBgn0024329, Mekk1, [Score=114, Expect=5e-25]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=116, Expect=7e-26]} {Smed: dd_Smed_v6_11735_0_1, dd_Smed_v6_11735_0_1, [RH, Score=112, Expect=5e-27]} {RNA1509_12652} {RNA1310_1303.1} {RNA815_406.1}
11.	MligTC455_38421	370	7.7	Mlig455_044722	Neo: - Age: Up-Down-Down	NAPRT	0.959	-	-	-	-	0.959	-	Mlig455_044722 {REF} {Length: 3922} {TRANSSPLICED} {Pfam: Nicotinate phosphoribosyltransferase C-terminal domain [PF17956.3, score=134.1]; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain [PF17767.3, score=126.7]; Nicotinate phosphoribosyltransferase (NAPRTase) family [PF04095.18, score=49.5]} {Human: ENSG00000147813, NAPRT, nicotinate phosphoribosyltransferase, [RH, Score=498, Expect=7e-172]; ENSG00000278488, NAPRT, nicotinate phosphoribosyltransferase, [RH, Score=498, Expect=7e-172]} {Mouse: ENSMUSG00000022574, Naprt, nicotinate phosphoribosyltransferase, [RH, Score=500, Expect=5e-173]} {Dmel: FBgn0031589, CG3714, [RH, Score=708, Expect=0.0]} {Celegans: WBGene00021882, nprt-1, Nicotinate phosphoribosyltransferase, [RH, Score=666, Expect=0.0]} {Smed: dd_Smed_v6_12183_0_2, dd_Smed_v6_12183_0_2, [RH, Score=716, Expect=0.0]} {RNA1509_6179} {RNA1310_9656.2} {RNA815_2619.1}
12.	MligTC455_50024	354	7.37	Mlig455_003621, Mlig455_070701	Neo: - Age: Down-Up-Down	ATF7IP	0.954	-	-	-	-	0.954	-	Mlig455_003621 {REF} {Length: 4513} {TRANSSPLICED} {Pfam: Fibronectin-III type domain [PF16794.7, score=92.7]} {Human: ENSG00000171681, ATF7IP, activating transcription factor 7 interacting protein, [RH, Score=103, Expect=8e-22]} {Mouse: ENSMUSG00000030213, Atf7ip, activating transcription factor 7 interacting protein, [RH, Score=101, Expect=2e-21]} {Dmel: FBgn0027499, wde, windei, [RH, Score=90.9, Expect=3e-18]} {Smed: dd_Smed_v6_9372_0_1, dd_Smed_v6_9372_0_1, [RH, Score=75.5, Expect=2e-14]} {RNA1509_10271, RNA1509_53701} {RNA1310_5928.1, RNA1509_53701} {RNA1509_53701, RNA815_4314.1} Mlig455_070701 {REF} {Length: 4470} {TRANSSPLICED} {RNA1509_10271} {RNA1310_5928.1} {RNA815_4314.1}
13.	MligTC455_41139	569	11.86	Mlig455_001282	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.661	SLC6A3	0.952	-	-	-	-	0.952	-	Mlig455_001282 {REF} {Length: 2522} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=533.2]} {Human: ENSG00000142319, SLC6A3, solute carrier family 6 member 3, [Score=451, Expect=1e-150]; ENSG00000276996, SLC6A3, solute carrier family 6 member 3, [Score=451, Expect=1e-150]; ENSG00000103546, SLC6A2, solute carrier family 6 member 2, [Score=439, Expect=8e-146]} {Mouse: ENSMUSG00000021609, Slc6a3, solute carrier family 6 (neurotransmitter transporter, dopamine), member 3, [Score=452, Expect=3e-151]; ENSMUSG00000055368, Slc6a2, solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2, [Score=443, Expect=9e-148]} {Dmel: FBgn0010414, SerT, Serotonin transporter, [Score=420, Expect=8e-139]} {Celegans: WBGene00003387, mod-5, Transporter, [Score=371, Expect=1e-119]} {Smed: dd_Smed_v6_22486_0_1, dd_Smed_v6_22486_0_1, [Score=497, Expect=1e-168]} {RNA1509_9639} {RNA1310_4480.1, RNA1509_9639} {RNA1509_9639, RNA815_1493}
14.	MligTC455_26230	55	1.15	Mlig455_006974	Neo: - Age: -		0.951	-	0.951	-	-	-	-	Mlig455_006974 {REF} {Length: 3113} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=54.1]} {RNA1509_2844} {RNA1310_68356} {RNA815_32175}
15.	MligTC455_34398	159	3.32	Mlig455_036864	Neo: - Age: -	PLEKHG1	0.951	-	0.951	-	-	-	-	Mlig455_036864 {REF} {Length: 2918} {Pfam: RhoGEF domain [PF00621.22, score=60.6]} {Human: ENSG00000120278, PLEKHG1, pleckstrin homology and RhoGEF domain containing G1, [Score=119, Expect=2e-27]} {Mouse: ENSMUSG00000040624, Plekhg1, pleckstrin homology domain containing, family G (with RhoGef domain) member 1, [Score=102, Expect=4e-22]} {Dmel: FBgn0050115, GEFmeso, Guanine nucleotide exchange factor in mesoderm, [Score=101, Expect=4e-22]} {Celegans: WBGene00015704, tiam-1, TIAM (Mammalian Tumor Invasion And Metastasis factor) homolog, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_4803_0_1, dd_Smed_v6_4803_0_1, [Score=90.1, Expect=1e-18]} {RNA1509_37218} {RNA1310_6141} {RNA815_9194.1}
16.	MligTC455_42621	154	3.21	Mlig455_028447	Neo: - Age: - Region-enriched R8: 3.203/0.03357		0.951	-	0.951	-	-	-	-	Mlig455_028447 {REF} {Length: 2832} {RNA1509_16747} {RNA1310_10498} {RNA815_4332.1}
17.	MligTC455_25003	427	8.9	Mlig455_011659	Neo: - Age: -	MAP3K19	0.95	-	-	-	-	0.950	-	Mlig455_011659 {REF} {Length: 5884} {Pfam: Protein kinase domain [PF00069.27, score=305.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=256.4]; Ankyrin repeats (3 copies) [PF12796.9, score=75.6]; Caspase domain [PF00656.24, score=56.2]; Ankyrin repeats (many copies) [PF13857.8, score=53.1]; Ankyrin repeat [PF13606.8, score=52.2]; Ankyrin repeats (many copies) [PF13637.8, score=40.8]; Fungal protein kinase [PF17667.3, score=34.3]; Ankyrin repeat [PF00023.32, score=31.5]; Kinase-like [PF14531.8, score=29.8]; Ternary complex associated domain 9 [PF19974.1, score=24.2]; ABC1 atypical kinase-like domain [PF03109.18, score=22.3]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=140, Expect=2e-34]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=140, Expect=2e-34]} {Dmel: FBgn0024329, Mekk1, [Score=114, Expect=5e-25]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=116, Expect=8e-26]} {Smed: dd_Smed_v6_11735_0_1, dd_Smed_v6_11735_0_1, [RH, Score=113, Expect=2e-27]} {RNA1509_12652, RNA1509_6764} {RNA1310_1303.1, RNA1509_12652, RNA1509_6764} {RNA1509_12652, RNA1509_6764, RNA815_406.1}

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