TomoSeq data search

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Results for MligTC455_23658

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_23658

5269

109.77

Mlig455_020388, Mlig455_058433

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.201/0.00027

NEDD8

Mlig455_020388 {REF} {Length: 731} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=90.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=58.5]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=21.1]; Ubiquitin-like domain [PF14560.8, score=20.7]} {Human: ENSG00000285246, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]; ENSG00000129559, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]} {Mouse: ENSMUSG00000010376, Nedd8, neural precursor cell expressed, developmentally down-regulated gene 8, [RH, Score=119, Expect=7e-37]} {Dmel: FBgn0032725, Nedd8, [RH, Score=134, Expect=1e-42]} {Celegans: WBGene00003587, ned-8, NEDD8, [RH, Score=132, Expect=3e-42]} {Smed: dd_Smed_v6_403_0_1, dd_Smed_v6_403_0_1, [RH, Score=133, Expect=1e-42]} {RNA1509_29083, RNA1509_6695} {RNA1310_34741, RNA1509_29083} {RNA1509_29083, RNA815_23503}

Mlig455_058433 {REF} {Length: 1384} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=90.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=58.5]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=21.1]; Ubiquitin-like domain [PF14560.8, score=20.7]} {Human: ENSG00000285246, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]; ENSG00000129559, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]} {Mouse: ENSMUSG00000010376, Nedd8, neural precursor cell expressed, developmentally down-regulated gene 8, [RH, Score=119, Expect=7e-37]} {Dmel: FBgn0032725, Nedd8, [RH, Score=134, Expect=1e-42]} {Celegans: WBGene00003587, ned-8, NEDD8, [RH, Score=132, Expect=3e-42]} {Smed: dd_Smed_v6_403_0_1, dd_Smed_v6_403_0_1, [RH, Score=133, Expect=1e-42]} {RNA1509_12405, RNA1509_3499, RNA1509_4548, RNA1509_51126, RNA1509_6695} {RNA1310_34741, RNA1509_12405, RNA1509_3499, RNA1509_4548, RNA1509_51126, RNA1509_6695} {RNA1509_12405, RNA1509_3499, RNA1509_4548, RNA1509_51126, RNA1509_6695, RNA815_23503}

Cumulative graph for MligTC455_23658

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.592	6.944	0.20201	0.83964
RegionR2	-0.801	6.944	0.00868	0.09228
RegionR3	0.336	6.944	0.17077	0.69658
RegionR4	1.201	6.944	0.00001	0.00027
RegionR5	0.514	6.944	0.02789	0.12299
RegionR6	0.162	6.944	0.51266	1.00000
RegionR7	-0.213	6.944	0.42879	1.00000
RegionR8	-0.606	6.944	0.06508	0.49392

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.702	6.944	0.29164	0.98966
RegenerationR2	-0.071	6.944	0.81671	0.99442
RegenerationR3	-0.291	6.944	0.34987	0.77052
RegenerationR4	-0.347	6.944	0.27594	0.72143
RegenerationR5	-0.003	6.944	0.99091	1.00000
RegenerationR6	-0.029	6.944	0.92680	1.00000
RegenerationBL	-0.584	6.944	0.05995	0.28451
RegenerationTP	-0.35	6.944	0.29686	0.74212

Genes with expression patterns similar to MligTC455_23658

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_23658	5269	109.77	Mlig455_020388, Mlig455_058433	Neo: Int S/G2/M Age: - Region-enriched R4: 1.201/0.00027	NEDD8	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_020388 {REF} {Length: 731} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=90.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=58.5]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=21.1]; Ubiquitin-like domain [PF14560.8, score=20.7]} {Human: ENSG00000285246, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]; ENSG00000129559, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]} {Mouse: ENSMUSG00000010376, Nedd8, neural precursor cell expressed, developmentally down-regulated gene 8, [RH, Score=119, Expect=7e-37]} {Dmel: FBgn0032725, Nedd8, [RH, Score=134, Expect=1e-42]} {Celegans: WBGene00003587, ned-8, NEDD8, [RH, Score=132, Expect=3e-42]} {Smed: dd_Smed_v6_403_0_1, dd_Smed_v6_403_0_1, [RH, Score=133, Expect=1e-42]} {RNA1509_29083, RNA1509_6695} {RNA1310_34741, RNA1509_29083} {RNA1509_29083, RNA815_23503} Mlig455_058433 {REF} {Length: 1384} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=90.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=58.5]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=21.1]; Ubiquitin-like domain [PF14560.8, score=20.7]} {Human: ENSG00000285246, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]; ENSG00000129559, NEDD8, neural precursor cell expressed, developmentally down-regulated 8, [RH, Score=134, Expect=1e-42]} {Mouse: ENSMUSG00000010376, Nedd8, neural precursor cell expressed, developmentally down-regulated gene 8, [RH, Score=119, Expect=7e-37]} {Dmel: FBgn0032725, Nedd8, [RH, Score=134, Expect=1e-42]} {Celegans: WBGene00003587, ned-8, NEDD8, [RH, Score=132, Expect=3e-42]} {Smed: dd_Smed_v6_403_0_1, dd_Smed_v6_403_0_1, [RH, Score=133, Expect=1e-42]} {RNA1509_12405, RNA1509_3499, RNA1509_4548, RNA1509_51126, RNA1509_6695} {RNA1310_34741, RNA1509_12405, RNA1509_3499, RNA1509_4548, RNA1509_51126, RNA1509_6695} {RNA1509_12405, RNA1509_3499, RNA1509_4548, RNA1509_51126, RNA1509_6695, RNA815_23503}
2.	MligTC455_31066	2522	52.54	Mlig455_013779, Mlig455_013903	Neo: - Age: logFC(26M/2M)=0.252 Region-enriched R4: 1.112/0.01187	ABCD3	1.823	-	-	-	0.952	-	0.871	Mlig455_013779 {REF} {Length: 3247} {TRANSSPLICED} {Pfam: ABC transporter transmembrane region 2 [PF06472.17, score=292.3]; ABC transporter [PF00005.29, score=62.6]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.5]} {Human: ENSG00000117528, ABCD3, ATP binding cassette subfamily D member 3, [RH, Score=825, Expect=0.0]} {Mouse: ENSMUSG00000028127, Abcd3, ATP-binding cassette, sub-family D (ALD), member 3, [RH, Score=824, Expect=0.0]} {Dmel: FBgn0031069, Pmp70, Peroxisomal Membrane Protein 70 kDa, [RH, Score=716, Expect=0.0]} {Celegans: WBGene00004059, pmp-2, Peroxisomal Membrane Protein related, [RH, Score=735, Expect=0.0]} {Smed: dd_Smed_v6_6907_0_1, dd_Smed_v6_6907_0_1, [RH, Score=691, Expect=0.0]} {RNA1509_13661, RNA1509_7546} {RNA1310_9097, RNA1509_13661} {RNA1509_13661, RNA815_3150} Mlig455_013903 {REF} {Length: 3245} {TRANSSPLICED} {Pfam: ABC transporter transmembrane region 2 [PF06472.17, score=292.3]; ABC transporter [PF00005.29, score=62.6]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.5]} {Human: ENSG00000117528, ABCD3, ATP binding cassette subfamily D member 3, [RH, Score=824, Expect=0.0]} {Mouse: ENSMUSG00000028127, Abcd3, ATP-binding cassette, sub-family D (ALD), member 3, [RH, Score=824, Expect=0.0]} {Dmel: FBgn0031069, Pmp70, Peroxisomal Membrane Protein 70 kDa, [RH, Score=717, Expect=0.0]} {Celegans: WBGene00004059, pmp-2, Peroxisomal Membrane Protein related, [RH, Score=735, Expect=0.0]} {Smed: dd_Smed_v6_6907_0_1, dd_Smed_v6_6907_0_1, [RH, Score=691, Expect=0.0]} {RNA1509_23727, RNA1509_7546} {RNA1310_9097, RNA1509_23727, RNA1509_7546} {RNA1509_23727, RNA1509_7546, RNA815_3150}
3.	MligTC455_23256	1851	38.55	Mlig455_038700	Neo: - Age: logFC(26M/2M)=0.556 Region-enriched R4: 1.320/0.00319 Region-enriched R5: 1.042/0.00372	POLR2L	1.717	-	0.764	-	0.953	-	-	Mlig455_038700 {REF} {Length: 631} {TRANSSPLICED} {Pfam: RNA polymerases N / 8 kDa subunit [PF01194.19, score=105.2]} {Human: ENSG00000177700, POLR2L, RNA polymerase II subunit L, [RH, Score=105, Expect=1e-31]} {Mouse: ENSMUSG00000038489, Polr2l, polymerase (RNA) II (DNA directed) polypeptide L, [RH, Score=105, Expect=8e-32]} {Dmel: FBgn0039218, Rpb10, [RH, Score=104, Expect=1e-31]} {Celegans: WBGene00021347, rpb-10, DNA-directed RNA polymerases I, II, and III subunit RPABC5, [RH, Score=106, Expect=2e-32]} {Smed: dd_Smed_v6_6731_0_1, dd_Smed_v6_6731_0_1, [RH, Score=107, Expect=5e-33]} {RNA1509_13354, RNA1509_20815, RNA1509_53967} {RNA1310_54340, RNA1509_13354, RNA1509_20815, RNA1509_53967} {RNA1509_13354, RNA1509_20815, RNA1509_53967, RNA815_28190}
4.	MligTC455_23255	1839	38.31	Mlig455_038687	Neo: - Age: - Region-enriched R4: 1.354/0.00273 Region-enriched R5: 1.032/0.00470	POLR2L	1.7	-	0.749	-	0.951	-	-	Mlig455_038687 {REF} {Length: 625} {TRANSSPLICED} {Pfam: RNA polymerases N / 8 kDa subunit [PF01194.19, score=105.2]} {Human: ENSG00000177700, POLR2L, RNA polymerase II subunit L, [RH, Score=105, Expect=1e-31]} {Mouse: ENSMUSG00000038489, Polr2l, polymerase (RNA) II (DNA directed) polypeptide L, [RH, Score=105, Expect=8e-32]} {Dmel: FBgn0039218, Rpb10, [RH, Score=104, Expect=1e-31]} {Celegans: WBGene00021347, rpb-10, DNA-directed RNA polymerases I, II, and III subunit RPABC5, [RH, Score=106, Expect=2e-32]} {Smed: dd_Smed_v6_6731_0_1, dd_Smed_v6_6731_0_1, [RH, Score=107, Expect=5e-33]} {RNA1509_53967} {RNA1310_54340} {RNA815_28190}
5.	MligTC455_49127	2061	42.93	Mlig455_001896	Neo: - Age: Down-Up-Up		0.985	-	-	-	0.985	-	-	Mlig455_001896 {REF} {Length: 894} {TRANSSPLICED} {Pfam: Roadblock/LC7 domain [PF03259.19, score=24.8]} {Dmel: FBgn0035469, CG14977, [RH, Score=50.8, Expect=2e-09]} {RNA1509_20564, RNA1509_25268, RNA1509_3565, RNA1509_46438, RNA1509_53218} {RNA1310_29229, RNA1509_20564, RNA1509_25268, RNA1509_46438, RNA1509_53218} {RNA1509_20564, RNA1509_25268, RNA1509_46438, RNA1509_53218, RNA815_11630.1}
6.	MligTC455_34376	3394	70.7	Mlig455_068724	Neo: Int S/G2/M Age: Down-Up-Up	PAM16	0.967	-	-	-	0.967	-	-	Mlig455_068724 {REF} {Length: 866} {TRANSSPLICED} {Pfam: Pam16 [PF03656.15, score=121.0]} {Human: ENSG00000217930, PAM16, presequence translocase associated motor 16, [RH, Score=98.2, Expect=2e-26]; ENSG00000282228, PAM16, presequence translocase associated motor 16, [RH, Score=98.2, Expect=2e-26]} {Mouse: ENSMUSG00000045886, Gm9803, predicted gene 9803, [RH, Score=100, Expect=1e-27]; ENSMUSG00000014301, Pam16, presequence translocase-asssociated motor 16 homolog (S. cerevisiae), [RH, Score=100, Expect=1e-27]} {Dmel: FBgn0038387, blp, black pearl, [RH, Score=114, Expect=4e-33]} {Celegans: WBGene00009734, F45G2.8, Mitochondrial import inner membrane translocase subunit tim-16, [RH, Score=106, Expect=4e-30]} {Smed: dd_Smed_v6_1720_0_1, dd_Smed_v6_1720_0_1, [RH, Score=110, Expect=7e-32]} {RNA1509_17135} {RNA1310_40855.1} {RNA815_19465}
7.	MligTC455_18399	4227	88.07	Mlig455_028751	Neo: Int S/G2/M Age: logFC(26M/2M)=0.949 Region-enriched R5: 1.135/0.00000	C1orf123	0.959	-	-	-	0.959	-	-	Mlig455_028751 {REF} {Length: 2418} {TRANSSPLICED} {Pfam: Eukaryotic protein of unknown function (DUF866) [PF05907.15, score=172.7]; Myb DNA-binding like [PF15963.7, score=87.8]; Myb-like DNA-binding domain [PF00249.33, score=19.6]} {Human: ENSG00000162384, C1orf123, chromosome 1 open reading frame 123, [RH, Score=181, Expect=3e-53]} {Mouse: ENSMUSG00000028608, 0610037L13Rik, RIKEN cDNA 0610037L13 gene, [RH, Score=184, Expect=4e-54]} {Dmel: FBgn0033810, CG4646, [RH, Score=139, Expect=2e-38]} {Celegans: WBGene00009776, F46B6.12, UPF0587 protein F46B6.12, [RH, Score=150, Expect=2e-42]} {Smed: dd_Smed_v6_8635_0_1, dd_Smed_v6_8635_0_1, [RH, Score=153, Expect=1e-43]} {RNA1509_11977, RNA1509_31410, RNA1509_52861, RNA1509_5315, RNA1509_54892} {RNA1310_18434, RNA1509_11977, RNA1509_31410, RNA1509_52861, RNA1509_54892} {RNA1509_11977, RNA1509_31410, RNA1509_52861, RNA1509_54892, RNA815_17428.1}
8.	MligTC455_45343	471	9.81	Mlig455_047861	Neo: - Age: Up-Down-Down	CMPK1	0.951	-	-	-	0.951	-	-	Mlig455_047861 {REF} {Length: 2539} {TRANSSPLICED} {Pfam: Adenylate kinase [PF00406.24, score=133.5]; AAA domain [PF13207.8, score=98.3]; AAA domain [PF13238.8, score=21.5]} {Human: ENSG00000162368, CMPK1, cytidine/uridine monophosphate kinase 1, [RH, Score=189, Expect=2e-60]} {Mouse: ENSMUSG00000028719, Cmpk1, cytidine monophosphate (UMP-CMP) kinase 1, [RH, Score=184, Expect=1e-58]} {Dmel: FBgn0028833, Dak1, [RH, Score=183, Expect=3e-58]} {Celegans: WBGene00009575, F40F8.1, UMP-CMP kinase 2, [RH, Score=190, Expect=2e-61]} {Smed: dd_Smed_v6_3353_0_1, dd_Smed_v6_3353_0_1, [RH, Score=210, Expect=1e-69]} {RNA1509_10945} {RNA1310_27658.1} {RNA815_12645}
9.	MligTC455_44814	1388	28.92	Mlig455_070303	Neo: - Age: - Region-enriched R5: 1.401/0.00000 Region-enriched R4: 1.114/0.00890	BOLA1	0.95	-	-	-	0.950	-	-	Mlig455_070303 {REF} {Length: 641} {TRANSSPLICED} {Pfam: BolA-like protein [PF01722.20, score=85.8]} {Human: ENSG00000178096, BOLA1, bolA family member 1, [Score=100, Expect=2e-27]} {Mouse: ENSMUSG00000015943, Bola1, bolA-like 1 (E. coli), [Score=93.2, Expect=8e-25]} {Dmel: FBgn0051126, CG31126, [Score=99.8, Expect=2e-27]} {Celegans: WBGene00019658, K11H12.1, Putative bolA-like protein K11H12.1, [Score=67.4, Expect=2e-15]} {Smed: dd_Smed_v6_21377_0_1, dd_Smed_v6_21377_0_1, [Score=45.4, Expect=4e-07]} {RNA1509_7811} {RNA1310_5962, RNA1509_7811} {RNA1509_7811, RNA815_28559}

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