M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23703

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23703 308 6.41 Mlig455_000461

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.388

 NTAN1 Mlig455_000461 {REF} {Length: 2576} {TRANSSPLICED} {Pfam: Protein N-terminal asparagine amidohydrolase [PF14736.8, score=199.5]} {Human: ENSG00000157045, NTAN1, N-terminal asparagine amidase, [RH, Score=148, Expect=1e-41]; ENSG00000275779, NTAN1, N-terminal asparagine amidase, [RH, Score=148, Expect=1e-41]} {Mouse: ENSMUSG00000022681, Ntan1, N-terminal Asn amidase, [Score=139, Expect=2e-38]} {Dmel: FBgn0034371, SP2637, [RH, Score=142, Expect=9e-40]} {Smed: dd_Smed_v6_10581_0_1, dd_Smed_v6_10581_0_1, [RH, Score=128, Expect=2e-34]} {RNA1509_26314} {RNA1310_28360, RNA1509_26314} {RNA1509_26314, RNA815_16333}

Cumulative graph for MligTC455_23703

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.814 3.178 0.54335 1.00000
RegionR2 1.154 3.178 0.15621 0.49455
RegionR3 -0.344 3.178 0.56608 1.00000
RegionR4 0.041 3.178 0.97398 1.00000
RegionR5 -1.334 3.178 0.01544 0.07993
RegionR6 -0.351 3.178 0.55940 1.00000
RegionR7 -1.307 3.178 0.15749 0.73342
RegionR8 1.327 3.178 0.09820 0.58998

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.559 3.178 0.43177 1.00000
RegenerationR2 0.679 3.178 0.32564 0.76381
RegenerationR3 0.961 3.178 0.22388 0.65905
RegenerationR4 -0.567 3.178 0.51505 0.87747
RegenerationR5 1.008 3.178 0.14840 0.56539
RegenerationR6 -0.036 3.178 0.97208 1.00000
RegenerationBL 0.136 3.178 0.91166 1.00000
RegenerationTP -0.508 3.178 0.66223 0.99508


Genes with expression patterns similar to MligTC455_23703

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23703 308 6.41 Mlig455_000461

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.388

 NTAN1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000461 {REF} {Length: 2576} {TRANSSPLICED} {Pfam: Protein N-terminal asparagine amidohydrolase [PF14736.8, score=199.5]} {Human: ENSG00000157045, NTAN1, N-terminal asparagine amidase, [RH, Score=148, Expect=1e-41]; ENSG00000275779, NTAN1, N-terminal asparagine amidase, [RH, Score=148, Expect=1e-41]} {Mouse: ENSMUSG00000022681, Ntan1, N-terminal Asn amidase, [Score=139, Expect=2e-38]} {Dmel: FBgn0034371, SP2637, [RH, Score=142, Expect=9e-40]} {Smed: dd_Smed_v6_10581_0_1, dd_Smed_v6_10581_0_1, [RH, Score=128, Expect=2e-34]} {RNA1509_26314} {RNA1310_28360, RNA1509_26314} {RNA1509_26314, RNA815_16333}
2. MligTC455_11964 18 0.38 Mlig455_063846

Neo: -

Age: Up-Down-Up

 1.682 - - 0.952 0.730 - - Mlig455_063846 {REF} {Length: 2728} {RNA1310_40220} {RNA815_27849}
3. MligTC455_31068 152 3.16 Mlig455_041420

Neo: -

Age: -

 MAN2C1 0.968 - - - - 0.968 - Mlig455_041420 {REF} {Length: 5198} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 38 N-terminal domain [PF01074.24, score=253.1]; Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=96.5]; Alpha mannosidase middle domain [PF09261.13, score=67.9]} {Human: ENSG00000140400, MAN2C1, mannosidase alpha class 2C member 1, [Score=567, Expect=0.0]} {Mouse: ENSMUSG00000032295, Man2c1, mannosidase, alpha, class 2C, member 1, [Score=555, Expect=0.0]} {Smed: dd_Smed_v6_7449_0_11, dd_Smed_v6_7449_0_11, [Score=683, Expect=0.0]} {RNA1509_13703, RNA1509_54285} {RNA1310_2504.1, RNA1509_54285} {RNA1509_54285, RNA815_715}
4. MligTC455_47319 582 12.13 Mlig455_011136

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.265

 CYBB 0.961 - 0.961 - - - - Mlig455_011136 {REF} {Length: 2151} {TRANSSPLICED} {Pfam: Ferric reductase NAD binding domain [PF08030.14, score=92.3]; FAD-binding domain [PF08022.14, score=69.6]; Ferric reductase like transmembrane component [PF01794.21, score=60.2]} {Human: ENSG00000165168, CYBB, cytochrome b-245 beta chain, [RH, Score=442, Expect=4e-149]; ENSG00000074771, NOX3, NADPH oxidase 3, [RH, Score=436, Expect=1e-146]} {Mouse: ENSMUSG00000015340, Cybb, cytochrome b-245, beta polypeptide, [RH, Score=438, Expect=1e-147]; ENSMUSG00000023802, Nox3, NADPH oxidase 3, [RH, Score=419, Expect=2e-140]} {Dmel: FBgn0283531, Duox, Dual oxidase, [Score=207, Expect=1e-56]} {Celegans: WBGene00000253, bli-3, Dual oxidase 1, [Score=170, Expect=2e-44]} {RNA1509_13517, RNA1509_38950} {RNA1310_7291.1, RNA1509_13517, RNA1509_38950} {RNA1509_13517, RNA1509_38950, RNA815_8310.1}
5. MligTC455_38004 456 9.51 Mlig455_061459

Neo: -

Age: Up-Down-Up

 UGCG 0.96 - - - - - 0.960 Mlig455_061459 {REF} {Length: 4786} {TRANSSPLICED} {Pfam: Glycosyl transferase family 21 [PF13506.8, score=119.1]; Glycosyltransferase like family 2 [PF13641.8, score=53.3]; Glycosyl transferase family group 2 [PF13632.8, score=40.9]} {Human: ENSG00000148154, UGCG, UDP-glucose ceramide glucosyltransferase, [Score=289, Expect=4e-94]} {Mouse: ENSMUSG00000028381, Ugcg, UDP-glucose ceramide glucosyltransferase, [Score=289, Expect=2e-94]} {Dmel: FBgn0067102, GlcT-1, Ceramide glucosyltransferase, [Score=281, Expect=9e-91]} {Celegans: WBGene00017625, cgt-2, Ceramide glucosyltransferase 2, [Score=259, Expect=3e-82]} {Smed: dd_Smed_v6_7543_0_1, dd_Smed_v6_7543_0_1, [RH, Score=322, Expect=1e-107]} {RNA1509_23639, RNA1509_48397, RNA1509_52582, RNA1509_52729} {RNA1310_22818, RNA1509_23639, RNA1509_48397, RNA1509_52729} {RNA1509_23639, RNA1509_48397, RNA1509_52729, RNA815_19911}
6. MligTC455_41344 123 2.55 Mlig455_034107

Neo: -

Age: Up-Down-Down

Region-enriched R4: 3.291/0.03980
Region-enriched R5: 2.510/0.03238

 0.96 - - - - - 0.960 Mlig455_034107 {REF} {Length: 415} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_58646} {RNA1310_54641} {RNA815_15629}
7. MligTC455_30364 252 5.25 Mlig455_058073

Neo: -

Age: logFC(26M/2M)=0.482

 0.959 - - - - - 0.959 Mlig455_058073 {REF} {Length: 3291} {TRANSSPLICED} {RNA1509_33897} {RNA1310_18647} {RNA815_14645}
8. MligTC455_30363 240 5 Mlig455_011101

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.846

 0.955 - - - - - 0.955 Mlig455_011101 {REF} {Length: 2013} {NoTransDecoderORF} {RNA1509_33897} {RNA1310_18647} {RNA815_14645}
9. MligTC455_50535 173 3.61 Mlig455_023102

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_023102 {REF} {Length: 3760} {TRANSSPLICED} {RNA1509_45068} {RNA1310_5375} {RNA815_1878}
10. MligTC455_49993 152 3.17 Mlig455_068971

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.374

 0.954 - - - - - 0.954 Mlig455_068971 {REF} {Length: 4440} {TRANSSPLICED} {RNA1509_46549, RNA1509_53939} {RNA1310_6208.1, RNA1509_46549, RNA1509_53939} {RNA1509_46549, RNA1509_53939, RNA815_18742}
11. MligTC455_52442 73 1.53 Mlig455_007385

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_007385 {REF} {Length: 1068} {NoTransDecoderORF} {RNA1310_134979}
12. MligTC455_16669 260 5.41 Mlig455_054337

Neo: -

Age: -

 ESCO2 0.951 - - - - - 0.951 Mlig455_054337 {REF} {Length: 1561} {TRANSSPLICED} {Pfam: ESCO1/2 acetyl-transferase [PF13880.8, score=71.9]; zinc-finger of acetyl-transferase ESCO [PF13878.8, score=51.1]} {Human: ENSG00000171320, ESCO2, establishment of sister chromatid cohesion N-acetyltransferase 2, [RH, Score=129, Expect=4e-33]} {Mouse: ENSMUSG00000022034, Esco2, establishment of sister chromatid cohesion N-acetyltransferase 2, [RH, Score=123, Expect=2e-31]; ENSMUSG00000024293, Esco1, establishment of sister chromatid cohesion N-acetyltransferase 1, [RH, Score=117, Expect=2e-30]} {Celegans: WBGene00017269, F08F8.4, [RH, Score=68.2, Expect=5e-13]} {Smed: dd_Smed_v6_15894_0_1, dd_Smed_v6_15894_0_1, [RH, Score=152, Expect=5e-45]} {RNA1509_41105, RNA1509_54656} {RNA1310_33289, RNA1509_41105} {RNA1509_41105, RNA815_18780}
13. MligTC455_10701 47 0.97 Mlig455_011740

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_011740 {REF} {Length: 4438} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=73.4]; Integrase zinc binding domain [PF17921.3, score=57.0]; Integrase core domain [PF00665.28, score=50.1]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.8]; Aspartyl protease [PF13650.8, score=25.7]; Retroviral aspartyl protease [PF00077.22, score=20.4]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=271, Expect=3e-75]} {RNA1509_54157} {RNA1310_5940.1} {RNA815_7551.1}
14. MligTC455_42692 297 6.2 Mlig455_027473

Neo: Irradiation

Age: Up-Down-Down

 GCFC2 0.95 - - - - - 0.950 Mlig455_027473 {REF} {Length: 3517} {TRANSSPLICED} {Pfam: GC-rich sequence DNA-binding factor-like protein [PF07842.14, score=37.9]} {Human: ENSG00000005436, GCFC2, GC-rich sequence DNA-binding factor 2, [RH, Score=178, Expect=5e-46]} {Mouse: ENSMUSG00000035125, Gcfc2, GC-rich sequence DNA binding factor 2, [RH, Score=172, Expect=3e-44]; ENSMUSG00000022974, Paxbp1, PAX3 and PAX7 binding protein 1, [RH, Score=168, Expect=1e-42]} {Dmel: FBgn0037466, CG1965, [RH, Score=154, Expect=2e-38]} {Celegans: WBGene00009672, F43G9.12, [RH, Score=125, Expect=4e-29]} {Smed: dd_Smed_v6_11179_0_1, dd_Smed_v6_11179_0_1, [RH, Score=202, Expect=1e-54]} {RNA1509_16602, RNA1509_20486, RNA1509_28455} {RNA1310_5802.1, RNA1509_16602, RNA1509_20486, RNA1509_28455} {RNA1509_16602, RNA1509_20486, RNA1509_28455, RNA815_7547}
15. MligTC455_46864 116 2.43 Mlig455_014247

Neo: -

Age: Down-Up-Down

 RASSF5 0.95 - - - - - 0.950 Mlig455_014247 {REF} {Length: 2930} {TRANSSPLICED} {Pfam: Ras association (RalGDS/AF-6) domain [PF00788.25, score=33.9]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=31.5]; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain [PF16517.7, score=30.1]} {Human: ENSG00000266094, RASSF5, Ras association domain family member 5, [Score=76.3, Expect=5e-15]; ENSG00000068028, RASSF1, Ras association domain family member 1, [Score=76.3, Expect=5e-15]} {Mouse: ENSMUSG00000010067, Rassf1, Ras association (RalGDS/AF-6) domain family member 1, [Score=82.0, Expect=4e-17]} {Celegans: WBGene00011995, rsf-1, RASSF (Ras-association domain family) homolog, [Score=98.2, Expect=5e-22]} {Smed: dd_Smed_v6_5323_0_1, dd_Smed_v6_5323_0_1, [Score=110, Expect=2e-26]} {RNA1509_20974} {RNA1310_11862} {RNA815_13937}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA