M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24168

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24168 2155 44.89 Mlig455_025874

Neo: -

Age: Up-Down-Up

Region-enriched R5: 1.003/0.01412

 PDCD6 Mlig455_025874 {REF} {Length: 843} {Pfam: EF hand [PF00036.34, score=48.9]; EF-hand domain pair [PF13499.8, score=48.3]; EF-hand domain [PF13405.8, score=45.0]; EF-hand domain pair [PF13833.8, score=40.8]; EF hand [PF13202.8, score=27.4]} {Human: ENSG00000249915, PDCD6, programmed cell death 6, [RH, Score=153, Expect=3e-48]} {Mouse: ENSMUSG00000021576, Pdcd6, programmed cell death 6, [Score=154, Expect=1e-47]} {Dmel: FBgn0086378, Alg-2, Apoptosis-linked gene-2, [Score=154, Expect=2e-48]} {Celegans: WBGene00019770, M04F3.4, [Score=135, Expect=4e-41]} {Smed: dd_Smed_v6_3585_0_1, dd_Smed_v6_3585_0_1, [Score=163, Expect=4e-52]} {RNA1509_19462} {RNA1310_34663.1} {RNA815_17202}

Cumulative graph for MligTC455_24168

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.368 5.636 0.09149 0.65002
RegionR2 -0.298 5.636 0.45213 0.83972
RegionR3 -0.171 5.636 0.61660 1.00000
RegionR4 0.938 5.636 0.01987 0.10164
RegionR5 1.003 5.636 0.00151 0.01412
RegionR6 0.262 5.636 0.43550 0.99679
RegionR7 0.187 5.636 0.61857 1.00000
RegionR8 -0.552 5.636 0.26733 0.89136

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.579 5.636 0.64136 1.00000
RegenerationR2 0.218 5.636 0.56173 0.89968
RegenerationR3 0.232 5.636 0.56785 0.89306
RegenerationR4 -0.13 5.636 0.75137 0.97031
RegenerationR5 -0.015 5.636 0.96768 1.00000
RegenerationR6 -0.51 5.636 0.21185 0.55540
RegenerationBL -0.139 5.636 0.72900 1.00000
RegenerationTP 0.154 5.636 0.72488 1.00000


Genes with expression patterns similar to MligTC455_24168

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24168 2155 44.89 Mlig455_025874

Neo: -

Age: Up-Down-Up

Region-enriched R5: 1.003/0.01412

 PDCD6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_025874 {REF} {Length: 843} {Pfam: EF hand [PF00036.34, score=48.9]; EF-hand domain pair [PF13499.8, score=48.3]; EF-hand domain [PF13405.8, score=45.0]; EF-hand domain pair [PF13833.8, score=40.8]; EF hand [PF13202.8, score=27.4]} {Human: ENSG00000249915, PDCD6, programmed cell death 6, [RH, Score=153, Expect=3e-48]} {Mouse: ENSMUSG00000021576, Pdcd6, programmed cell death 6, [Score=154, Expect=1e-47]} {Dmel: FBgn0086378, Alg-2, Apoptosis-linked gene-2, [Score=154, Expect=2e-48]} {Celegans: WBGene00019770, M04F3.4, [Score=135, Expect=4e-41]} {Smed: dd_Smed_v6_3585_0_1, dd_Smed_v6_3585_0_1, [Score=163, Expect=4e-52]} {RNA1509_19462} {RNA1310_34663.1} {RNA815_17202}
2. MligTC455_24169 2159 44.97 Mlig455_025964

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.007/0.01417

 PDCD6 5.995 0.999 1.000 0.999 0.999 0.999 0.999 Mlig455_025964 {REF} {Length: 1033} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=73.5]; EF-hand domain [PF13405.8, score=70.3]; EF hand [PF00036.34, score=67.4]; EF-hand domain pair [PF13833.8, score=55.2]; EF hand [PF13202.8, score=45.6]} {Human: ENSG00000249915, PDCD6, programmed cell death 6, [RH, Score=218, Expect=6e-72]} {Mouse: ENSMUSG00000021576, Pdcd6, programmed cell death 6, [RH, Score=216, Expect=3e-71]} {Dmel: FBgn0086378, Alg-2, Apoptosis-linked gene-2, [Score=225, Expect=3e-75]} {Celegans: WBGene00019770, M04F3.4, [Score=193, Expect=6e-63]} {Smed: dd_Smed_v6_3585_0_1, dd_Smed_v6_3585_0_1, [Score=228, Expect=1e-76]} {RNA1509_19462, RNA1509_51684, RNA1509_8622} {RNA1310_33615, RNA1509_19462, RNA1509_51684, RNA1509_8622} {RNA1509_19462, RNA1509_51684, RNA1509_8622, RNA815_17202}
3. MligTC455_44343 2474 51.54 Mlig455_035067, Mlig455_035084

Neo: -

Age: -

 RAB24 0.972 - - - 0.972 - -

Mlig455_035067 {REF} {Length: 1208} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=136.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=89.8]; ADP-ribosylation factor family [PF00025.23, score=31.3]} {Human: ENSG00000169228, RAB24, RAB24, member RAS oncogene family, [Score=179, Expect=1e-56]} {Mouse: ENSMUSG00000034789, Rab24, RAB24, member RAS oncogene family, [Score=182, Expect=5e-58]} {Dmel: FBgn0014010, Rab5, [Score=121, Expect=5e-34]} {Celegans: WBGene00004268, rab-5, RAB family, [Score=130, Expect=8e-38]} {Smed: dd_Smed_v6_2486_0_1, dd_Smed_v6_2486_0_1, [Score=167, Expect=2e-52]} {RNA1509_8747} {RNA1310_26427.1} {RNA815_12554.1}

Mlig455_035084 {REF} {Length: 1209} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=135.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=89.8]; ADP-ribosylation factor family [PF00025.23, score=31.2]} {Human: ENSG00000169228, RAB24, RAB24, member RAS oncogene family, [Score=179, Expect=2e-56]} {Mouse: ENSMUSG00000034789, Rab24, RAB24, member RAS oncogene family, [Score=182, Expect=6e-58]} {Dmel: FBgn0014010, Rab5, [Score=120, Expect=1e-33]} {Celegans: WBGene00004268, rab-5, RAB family, [Score=129, Expect=3e-37]} {Smed: dd_Smed_v6_2486_0_1, dd_Smed_v6_2486_0_1, [Score=169, Expect=5e-53]} {RNA1509_8747} {RNA1310_26427.1, RNA1509_8747} {RNA1509_8747, RNA815_12554.1}
4. MligTC455_19789 2643 55.06 Mlig455_005131, Mlig455_005178

Neo: -

Age: -

 VAMP1 0.97 - - - 0.970 - -

Mlig455_005131 {REF} {Length: 1541} {TRANSSPLICED} {Pfam: Synaptobrevin [PF00957.23, score=97.8]} {Human: ENSG00000139190, VAMP1, vesicle associated membrane protein 1, [Score=74.7, Expect=8e-18]; ENSG00000263620, AC129492.3, novel protein, [Score=74.3, Expect=1e-17]; ENSG00000220205, VAMP2, vesicle associated membrane protein 2, [Score=73.9, Expect=1e-17]} {Mouse: ENSMUSG00000030337, Vamp1, vesicle-associated membrane protein 1, [Score=76.3, Expect=1e-18]; ENSMUSG00000020894, Vamp2, vesicle-associated membrane protein 2, [Score=74.3, Expect=2e-17]} {Dmel: FBgn0013342, nSyb, neuronal Synaptobrevin, [Score=80.9, Expect=2e-20]} {Celegans: WBGene00004898, snb-2, SyNaptoBrevin related, [Score=78.2, Expect=1e-19]} {Smed: dd_Smed_v6_9710_0_1, dd_Smed_v6_9710_0_1, [Score=86.3, Expect=2e-22]} {RNA1509_29999, RNA1509_6619} {RNA1310_38273.1, RNA1509_29999} {RNA1509_29999, RNA815_18398.1}

Mlig455_005178 {REF} {Length: 1509} {TRANSSPLICED} {Pfam: Synaptobrevin [PF00957.23, score=97.9]} {Human: ENSG00000139190, VAMP1, vesicle associated membrane protein 1, [Score=74.7, Expect=7e-18]; ENSG00000220205, VAMP2, vesicle associated membrane protein 2, [Score=73.9, Expect=1e-17]; ENSG00000263620, AC129492.3, novel protein, [Score=73.9, Expect=1e-17]} {Mouse: ENSMUSG00000030337, Vamp1, vesicle-associated membrane protein 1, [Score=76.3, Expect=1e-18]; ENSMUSG00000020894, Vamp2, vesicle-associated membrane protein 2, [Score=74.3, Expect=2e-17]} {Dmel: FBgn0013342, nSyb, neuronal Synaptobrevin, [Score=85.1, Expect=3e-21]} {Celegans: WBGene00004898, snb-2, SyNaptoBrevin related, [Score=78.6, Expect=8e-20]} {Smed: dd_Smed_v6_9710_0_1, dd_Smed_v6_9710_0_1, [Score=86.7, Expect=1e-22]} {RNA1509_32543, RNA1509_54849, RNA1509_59405, RNA1509_6619} {RNA1310_38273.2, RNA1509_32543, RNA1509_54849, RNA1509_59405, RNA1509_6619} {RNA1509_32543, RNA1509_54849, RNA1509_59405, RNA1509_6619, RNA815_18398.1}
5. MligTC455_50512 131 2.73 Mlig455_039758

Neo: -

Age: -

 HDAC11 0.958 - - - - 0.958 - Mlig455_039758 {REF} {Length: 3090} {TRANSSPLICED} {Pfam: Histone deacetylase domain [PF00850.21, score=139.2]} {Human: ENSG00000163517, HDAC11, histone deacetylase 11, [Score=301, Expect=2e-101]} {Mouse: ENSMUSG00000034245, Hdac11, histone deacetylase 11, [Score=303, Expect=3e-102]} {Dmel: FBgn0051119, HDAC11, Histone deacetylase 11, [Score=270, Expect=2e-89]} {Celegans: WBGene00007953, hda-11, Histone DeAcetylase, [Score=252, Expect=1e-82]} {Smed: dd_Smed_v6_3401_0_4, dd_Smed_v6_3401_0_4, [Score=244, Expect=2e-79]} {RNA1310_29298} {RNA815_14482}
6. MligTC455_33326 929 19.36 Mlig455_051043

Neo: -

Age: -

 FOXO4 0.956 - - - 0.956 - - Mlig455_051043 {REF} {Length: 2585} {TRANSSPLICED} {Pfam: Forkhead domain [PF00250.20, score=91.4]} {Human: ENSG00000184481, FOXO4, forkhead box O4, [RH, Score=164, Expect=4e-45]; ENSG00000150907, FOXO1, forkhead box O1, [RH, Score=158, Expect=2e-42]; ENSG00000118689, FOXO3, forkhead box O3, [RH, Score=156, Expect=2e-41]} {Mouse: ENSMUSG00000042903, Foxo4, forkhead box O4, [RH, Score=160, Expect=6e-44]; ENSMUSG00000044167, Foxo1, forkhead box O1, [RH, Score=157, Expect=3e-42]; ENSMUSG00000048756, Foxo3, forkhead box O3, [RH, Score=152, Expect=3e-40]; ENSMUSG00000052135, Foxo6, forkhead box O6, [RH, Score=152, Expect=6e-41]} {Dmel: FBgn0038197, foxo, forkhead box, sub-group O, [RH, Score=152, Expect=7e-41]} {Celegans: WBGene00000912, daf-16, Forkhead box protein O, [RH, Score=144, Expect=1e-38]} {Smed: dd_Smed_v6_3040_0_1, dd_Smed_v6_3040_0_1, [Score=97.8, Expect=1e-22]} {RNA1509_29495, RNA1509_51486, RNA1509_8075} {RNA1310_8150, RNA1509_29495, RNA1509_51486, RNA1509_8075} {RNA1509_29495, RNA1509_51486, RNA1509_8075, RNA815_6755.1}
7. MligTC455_45119 702 14.63 Mlig455_041061

Neo: -

Age: logFC(26M/2M)=-0.335

 CFAP61 0.954 - - - 0.954 - - Mlig455_041061 {REF} {Length: 4452} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4821) [PF16092.7, score=292.5]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=33.7]} {Human: ENSG00000089101, CFAP61, cilia and flagella associated protein 61, [RH, Score=1009, Expect=0.0]} {Mouse: ENSMUSG00000037143, Cfap61, cilia and flagella associated protein 61, [RH, Score=1008, Expect=0.0]} {Dmel: FBgn0050268, CG30268, [RH, Score=112, Expect=1e-24]} {Smed: dd_Smed_v6_4908_0_1, dd_Smed_v6_4908_0_1, [RH, Score=784, Expect=0.0]} {RNA1509_1314} {RNA1310_1812.1} {RNA815_503}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA