M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24263

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24263 21 0.43 Mlig455_046532, Mlig455_046640

Neo: Irradiation

Age: Down-Up-Down

Region-enriched R2: 5.925/0.04494

Mlig455_046532 {REF} {Length: 2742} {RNA1509_44930} {RNA1310_21062.2} {RNA815_16757}

Mlig455_046640 {REF} {Length: 2759} {TRANSSPLICED} {RNA1509_44930} {RNA1310_21062.2} {RNA815_17193.1}

Cumulative graph for MligTC455_24263

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.848 1.004 0.99956 1.00000
RegionR2 5.925 1.004 0.00289 0.04494
RegionR3 3.068 1.004 0.02134 0.24620
RegionR4 -3.382 1.004 0.99477 1.00000
RegionR5 1.835 1.004 0.27243 0.59788
RegionR6 -0.351 1.004 0.85020 1.00000
RegionR7 -0.647 1.004 0.99981 1.00000
RegionR8 0.4 1.004 0.99969 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.509 1.004 0.99982 1.00000
RegenerationR2 1.636 1.004 0.14662 0.57847
RegenerationR3 1.931 1.004 0.11065 0.52385
RegenerationR4 4.257 1.004 0.00567 0.10745
RegenerationR5 1.818 1.004 0.04411 0.34436
RegenerationR6 6.105 1.004 0.00036 0.01935
RegenerationBL 1.98 1.004 0.99975 1.00000
RegenerationTP 5.436 1.004 0.04328 0.34520


Genes with expression patterns similar to MligTC455_24263

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24263 21 0.43 Mlig455_046532, Mlig455_046640

Neo: Irradiation

Age: Down-Up-Down

Region-enriched R2: 5.925/0.04494

 4 1.000 1.000 - - 1.000 1.000

Mlig455_046532 {REF} {Length: 2742} {RNA1509_44930} {RNA1310_21062.2} {RNA815_16757}

Mlig455_046640 {REF} {Length: 2759} {TRANSSPLICED} {RNA1509_44930} {RNA1310_21062.2} {RNA815_17193.1}
2. MligTC455_55791 13 0.26 Mlig455_064674

Neo: -

Age: -

 0.994 - - - - 0.994 - Mlig455_064674 {REF} {Length: 343} {NoTransDecoderORF}
3. MligTC455_38980 24 0.5 Mlig455_028382, Mlig455_066206, Mlig455_068842

Neo: -

Age: Up-Down-Up

 FAT4 0.982 - - - - 0.982 -

Mlig455_028382 {REF} {Length: 9853} {Pfam: Cadherin domain [PF00028.19, score=912.0]; Cadherin-like [PF16184.7, score=81.8]; Cadherin-like [PF08266.14, score=67.6]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=598, Expect=1e-171]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [Score=617, Expect=1e-177]} {Dmel: FBgn0001075, ft, fat, [Score=525, Expect=4e-149]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=232, Expect=3e-60]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=248, Expect=3e-65]} {RNA1509_39651} {RNA1310_58.1} {RNA815_7933}

Mlig455_066206 {REF} {Length: 18337} {Pfam: Cadherin domain [PF00028.19, score=1818.5]; Cadherin-like [PF16184.7, score=197.4]; Cadherin-like [PF08266.14, score=93.2]; Aspartic acid proteinase inhibitor [PF16845.7, score=21.7]; Neuraminyllactose-binding hemagglutinin precursor (NLBH) [PF05211.14, score=20.1]; Phage tail assembly chaperone protein, TAC [PF10876.10, score=19.9]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=948, Expect=0.0]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [Score=936, Expect=0.0]} {Dmel: FBgn0001075, ft, fat, [Score=706, Expect=0.0]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=372, Expect=2e-102]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=378, Expect=4e-104]} {RNA1509_3303, RNA1509_40306} {RNA1310_58.1, RNA1509_40306} {RNA1509_40306, RNA815_56.1}

Mlig455_068842 {REF} {Length: 17763} {Pfam: Cadherin domain [PF00028.19, score=1722.6]; Cadherin-like [PF16184.7, score=177.8]; Cadherin-like [PF08266.14, score=92.7]; BON domain [PF04972.19, score=22.2]; Phage tail assembly chaperone protein, TAC [PF10876.10, score=20.3]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=833, Expect=0.0]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [Score=835, Expect=0.0]} {Dmel: FBgn0001075, ft, fat, [Score=697, Expect=0.0]} {Celegans: WBGene00019994, cdh-1, CaDHerin family, [RH, Score=330, Expect=1e-89]} {Smed: dd_Smed_v6_15356_0_1, dd_Smed_v6_15356_0_1, [Score=281, Expect=2e-75]} {RNA1509_43134} {RNA1310_58.1, RNA1509_43134} {RNA1509_43134, RNA815_56.1}
4. MligTC455_36771 27 0.56 Mlig455_032468

Neo: -

Age: -

 CASP10 0.98 - - - - 0.980 - Mlig455_032468 {REF} {Length: 4345} {Pfam: Caspase domain [PF00656.24, score=91.3]} {Human: ENSG00000003400, CASP10, caspase 10, [Score=79.0, Expect=1e-14]; ENSG00000064012, CASP8, caspase 8, [Score=76.6, Expect=7e-14]; ENSG00000165806, CASP7, caspase 7, [Score=76.3, Expect=7e-14]} {Mouse: ENSMUSG00000025076, Casp7, caspase 7, [Score=85.1, Expect=2e-17]} {Dmel: FBgn0019972, Drice, Death related ICE-like caspase, [Score=85.9, Expect=1e-17]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=95.1, Expect=3e-21]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [Score=74.3, Expect=2e-14]} {RNA1509_28485} {RNA1310_3274.1, RNA1509_28485} {RNA1509_28485, RNA815_3447}
5. MligTC455_30595 5 0.11 Mlig455_052242

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_052242 {REF} {Length: 2223} {Pfam: Mab-21 protein [PF03281.16, score=19.5]} {RNA1509_39688} {RNA1310_6142.1} {RNA815_6750.1}
6. MligTC455_19465 216 4.5 Mlig455_011567

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.898

Region-enriched R2: 2.709/0.02014

 LRRC69 0.966 - - - - 0.966 - Mlig455_011567 {REF} {Length: 2449} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=92.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=80.1]; Leucine Rich repeat [PF13516.8, score=33.3]; Leucine Rich Repeat [PF00560.35, score=27.4]} {Human: ENSG00000214954, LRRC69, leucine rich repeat containing 69, [RH, Score=198, Expect=7e-60]} {Mouse: ENSMUSG00000023151, Lrrc69, leucine rich repeat containing 69, [RH, Score=218, Expect=1e-67]} {Dmel: FBgn0033984, Lap1, [Score=105, Expect=3e-24]} {Celegans: WBGene00002632, let-413, [Score=112, Expect=8e-27]} {Smed: dd_Smed_v6_14722_0_1, dd_Smed_v6_14722_0_1, [RH, Score=184, Expect=5e-56]} {RNA1509_41102} {RNA1310_3215.1} {RNA815_13052}
7. MligTC455_21304 7 0.15 Mlig455_061099

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_061099 {REF} {Length: 1248} {RNA1310_36349} {RNA815_50494}
8. MligTC455_51913 10 0.22 Mlig455_027292

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_027292 {REF} {Length: 623} {NoTransDecoderORF} {RNA1310_29520}
9. MligTC455_30510 11 0.22 Mlig455_055207

Neo: -

Age: -

 PPFIBP1 0.958 - - - - - 0.958 Mlig455_055207 {REF} {Length: 3280} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=70.1]; SAM domain (Sterile alpha motif) [PF00536.32, score=49.7]; TolA binding protein trimerisation [PF16331.7, score=19.1]} {Human: ENSG00000110841, PPFIBP1, PPFIA binding protein 1, [RH, Score=198, Expect=8e-54]; ENSG00000166387, PPFIBP2, PPFIA binding protein 2, [RH, Score=192, Expect=4e-52]} {Mouse: ENSMUSG00000016487, Ppfibp1, PTPRF interacting protein, binding protein 1 (liprin beta 1), [RH, Score=197, Expect=5e-53]; ENSMUSG00000036528, Ppfibp2, PTPRF interacting protein, binding protein 2 (liprin beta 2), [RH, Score=194, Expect=5e-52]} {Dmel: FBgn0036376, Liprin-beta, [RH, Score=179, Expect=1e-47]} {Celegans: WBGene00011904, hlb-1, Liprin-beta, [RH, Score=155, Expect=4e-39]} {Smed: dd_Smed_v6_7610_0_2, dd_Smed_v6_7610_0_2, [RH, Score=204, Expect=1e-56]} {RNA1509_21478} {RNA1310_4697} {RNA815_6558}
10. MligTC455_24740 54 1.13 Mlig455_036332, Mlig455_036355

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_036332 {REF} {Length: 268} {NoTransDecoderORF}

Mlig455_036355 {REF} {Length: 3796} {RNA1310_76210}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA