M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30595

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30595 5 0.11 Mlig455_052242

Neo: -

Age: -

 Mlig455_052242 {REF} {Length: 2223} {Pfam: Mab-21 protein [PF03281.16, score=19.5]} {RNA1509_39688} {RNA1310_6142.1} {RNA815_6750.1}

Cumulative graph for MligTC455_30595

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_30595

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30595 5 0.11 Mlig455_052242

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_052242 {REF} {Length: 2223} {Pfam: Mab-21 protein [PF03281.16, score=19.5]} {RNA1509_39688} {RNA1310_6142.1} {RNA815_6750.1}
2. MligTC455_17323 15 0.32 Mlig455_012298

Neo: Int S/G2/M

Age: -

 0.992 - - - - 0.992 - Mlig455_012298 {REF} {Length: 2351} {RNA1310_93397} {RNA815_47617}
3. MligTC455_08211 5 0.09 Mlig455_038301

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_038301 {REF} {Length: 512} {NoTransDecoderORF}
4. MligTC455_17370 13 0.27 Mlig455_014235

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_014235 {REF} {Length: 465} {NoTransDecoderORF} {RNA1310_77462}
5. MligTC455_36771 27 0.56 Mlig455_032468

Neo: -

Age: -

 CASP10 0.987 - - - - 0.987 - Mlig455_032468 {REF} {Length: 4345} {Pfam: Caspase domain [PF00656.24, score=91.3]} {Human: ENSG00000003400, CASP10, caspase 10, [Score=79.0, Expect=1e-14]; ENSG00000064012, CASP8, caspase 8, [Score=76.6, Expect=7e-14]; ENSG00000165806, CASP7, caspase 7, [Score=76.3, Expect=7e-14]} {Mouse: ENSMUSG00000025076, Casp7, caspase 7, [Score=85.1, Expect=2e-17]} {Dmel: FBgn0019972, Drice, Death related ICE-like caspase, [Score=85.9, Expect=1e-17]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=95.1, Expect=3e-21]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [Score=74.3, Expect=2e-14]} {RNA1509_28485} {RNA1310_3274.1, RNA1509_28485} {RNA1509_28485, RNA815_3447}
6. MligTC455_02837 29 0.61 Mlig455_004700

Neo: -

Age: -

Region-enriched R6: 6.687/0.01418

 0.985 - - - - 0.985 - Mlig455_004700 {REF} {Length: 1630} {RNA1509_44223} {RNA1310_194.1} {RNA815_27158}
7. MligTC455_49303 64 1.33 Mlig455_058897

Neo: -

Age: -

 SALL3 0.984 - - - - 0.984 - Mlig455_058897 {REF} {Length: 4598} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=70.9]; C2H2-type zinc finger [PF13894.8, score=55.8]; Zinc-finger double domain [PF13465.8, score=55.4]; Zinc-finger of C2H2 type [PF12874.9, score=45.8]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=39.1]} {Human: ENSG00000256463, SALL3, spalt like transcription factor 3, [Score=92.4, Expect=3e-18]; ENSG00000277015, SALL3, spalt like transcription factor 3, [Score=92.4, Expect=3e-18]; ENSG00000263310, SALL3, spalt like transcription factor 3, [Score=92.4, Expect=3e-18]; ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=91.3, Expect=5e-18]; ENSG00000130856, ZNF236, zinc finger protein 236, [Score=90.9, Expect=1e-17]; ENSG00000103449, SALL1, spalt like transcription factor 1, [Score=90.1, Expect=2e-17]} {Mouse: ENSMUSG00000024565, Sall3, spalt like transcription factor 3, [Score=92.0, Expect=2e-18]; ENSMUSG00000027547, Sall4, spalt like transcription factor 4, [Score=91.7, Expect=3e-18]; ENSMUSG00000031665, Sall1, spalt like transcription factor 1, [Score=90.1, Expect=1e-17]} {Dmel: FBgn0261648, salm, spalt major, [RH, Score=97.4, Expect=5e-20]} {Celegans: WBGene00004773, sem-4, SEM-4 long form, [RH, Score=97.4, Expect=2e-20]} {Smed: dd_Smed_v6_14176_0_1, dd_Smed_v6_14176_0_1, [RH, Score=121, Expect=2e-28]} {RNA1310_43057} {RNA815_29425}
8. MligTC455_57312 3 0.06 Mlig455_043531

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_043531 {REF} {Length: 430} {Pfam: Leucine rich repeat N-terminal domain [PF01462.20, score=32.6]}
9. MligTC455_27751 8 0.16 Mlig455_006257

Neo: -

Age: Up-Down-Up

 ALKBH3 0.982 - - - - 0.982 - Mlig455_006257 {REF} {Length: 2864} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=76.9]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=108, Expect=3e-25]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=101, Expect=5e-23]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=81.6, Expect=1e-16]} {RNA1509_23004} {RNA1310_19653} {RNA815_20132}
10. MligTC455_24740 54 1.13 Mlig455_036332, Mlig455_036355

Neo: -

Age: -

 0.981 - - - - 0.981 -

Mlig455_036332 {REF} {Length: 268} {NoTransDecoderORF}

Mlig455_036355 {REF} {Length: 3796} {RNA1310_76210}
11. MligTC455_55389 7 0.14 Mlig455_051098

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_051098 {REF} {Length: 79} {NoTransDecoderORF} {RNA1310_22135}
12. MligTC455_21304 7 0.15 Mlig455_061099

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_061099 {REF} {Length: 1248} {RNA1310_36349} {RNA815_50494}
13. MligTC455_51913 10 0.22 Mlig455_027292

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_027292 {REF} {Length: 623} {NoTransDecoderORF} {RNA1310_29520}
14. MligTC455_30852 46 0.96 Mlig455_019345, Mlig455_019563, Mlig455_059135

Neo: -

Age: -

 GRIA2, GRIK2, GRIK4 0.974 - - - - 0.974 -

Mlig455_019345 {REF} {Length: 3399} {Pfam: Ligand-gated ion channel [PF00060.28, score=95.4]; Receptor family ligand binding region [PF01094.30, score=56.8]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=44.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=25.8]; Iron-containing alcohol dehydrogenase [PF13685.8, score=21.9]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=159, Expect=1e-39]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=157, Expect=9e-39]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=159, Expect=7e-40]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=155, Expect=2e-38]} {Dmel: FBgn0039927, CG11155, [Score=160, Expect=3e-40]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=126, Expect=1e-29]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [RH, Score=281, Expect=4e-87]} {RNA1509_10728} {RNA1310_122.1} {RNA815_8415.1}

Mlig455_019563 {REF} {Length: 2692} {Pfam: Ligand-gated ion channel [PF00060.28, score=91.5]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=98.6, Expect=6e-23]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=95.9, Expect=5e-22]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=94.7, Expect=1e-21]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=96.7, Expect=2e-22]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=95.9, Expect=3e-22]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=94.7, Expect=9e-22]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=92.8, Expect=4e-21]} {Dmel: FBgn0038837, CG3822, [Score=99.4, Expect=2e-23]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=92.8, Expect=2e-21]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=176, Expect=4e-53]} {RNA1310_21734.1} {RNA815_52393}

Mlig455_059135 {REF} {Length: 3434} {Pfam: Receptor family ligand binding region [PF01094.30, score=58.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=45.1]; Iron-containing alcohol dehydrogenase [PF13685.8, score=23.1]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=71.6, Expect=2e-12]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=70.5, Expect=3e-12]} {Dmel: FBgn0038837, CG3822, [Score=62.0, Expect=1e-09]} {Celegans: WBGene00001617, glr-6, GLutamate Receptor family (AMPA), [Score=68.6, Expect=6e-12]} {Smed: dd_Smed_v6_41723_0_2, dd_Smed_v6_41723_0_2, [Score=85.1, Expect=8e-18]} {RNA1509_10728} {RNA1310_122.1} {RNA815_8415.1}
15. MligTC455_09304 155 3.23 Mlig455_065453

Neo: -

Age: Down-Up-Down

Region-enriched R4: 3.745/0.02737
Region-enriched R5: 2.382/0.04543

 0.973 - - - - 0.973 - Mlig455_065453 {REF} {Length: 2759} {TRANSSPLICED} {RNA1509_35599} {RNA1310_29110} {RNA815_21725}
16. MligTC455_16785 99 2.06 Mlig455_061289, Mlig455_061323, Mlig455_062675

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_061289 {REF} {Length: 2624} {RNA1509_55425} {RNA1310_21283, RNA1509_55425} {RNA1509_55425, RNA815_20966}

Mlig455_061323 {REF} {Length: 2546} {RNA1509_55425} {RNA1310_21283} {RNA815_20966}

Mlig455_062675 {REF} {Length: 2625} {RNA1509_55425} {RNA1310_21283} {RNA815_20966}
17. MligTC455_19465 216 4.5 Mlig455_011567

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.898

Region-enriched R2: 2.709/0.02014

 LRRC69 0.969 - - - - 0.969 - Mlig455_011567 {REF} {Length: 2449} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=92.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=80.1]; Leucine Rich repeat [PF13516.8, score=33.3]; Leucine Rich Repeat [PF00560.35, score=27.4]} {Human: ENSG00000214954, LRRC69, leucine rich repeat containing 69, [RH, Score=198, Expect=7e-60]} {Mouse: ENSMUSG00000023151, Lrrc69, leucine rich repeat containing 69, [RH, Score=218, Expect=1e-67]} {Dmel: FBgn0033984, Lap1, [Score=105, Expect=3e-24]} {Celegans: WBGene00002632, let-413, [Score=112, Expect=8e-27]} {Smed: dd_Smed_v6_14722_0_1, dd_Smed_v6_14722_0_1, [RH, Score=184, Expect=5e-56]} {RNA1509_41102} {RNA1310_3215.1} {RNA815_13052}
18. MligTC455_12092 26 0.53 Mlig455_037145, Mlig455_038506

Neo: -

Age: -

Region-enriched R2: 8.236/0.00174

 0.968 - - - - 0.968 -

Mlig455_037145 {REF} {Length: 1565} {RNA1310_83153} {RNA815_43915}

Mlig455_038506 {REF} {Length: 1558} {RNA1310_83153} {RNA815_43915}
19. MligTC455_11983 31 0.65 Mlig455_018799, Mlig455_018971

Neo: -

Age: -

 0.967 - - - - 0.967 -

Mlig455_018799 {REF} {Length: 1330} {TRANSSPLICED} {Smed: dd_Smed_v6_1404_0_1, dd_Smed_v6_1404_0_1, [Score=79.7, Expect=4e-16]}

Mlig455_018971 {REF} {Length: 1242} {Smed: dd_Smed_v6_1404_0_1, dd_Smed_v6_1404_0_1, [Score=77.4, Expect=2e-15]}
20. MligTC455_24263 21 0.43 Mlig455_046532, Mlig455_046640

Neo: Irradiation

Age: Down-Up-Down

Region-enriched R2: 5.925/0.04494

 0.967 - - - - 0.967 -

Mlig455_046532 {REF} {Length: 2742} {RNA1509_44930} {RNA1310_21062.2} {RNA815_16757}

Mlig455_046640 {REF} {Length: 2759} {TRANSSPLICED} {RNA1509_44930} {RNA1310_21062.2} {RNA815_17193.1}
21. MligTC455_33778 301 6.27 Mlig455_039535

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_039535 {REF} {Length: 1526} {NoTransDecoderORF} {RNA1509_24833} {RNA1310_46713} {RNA815_28917}
22. MligTC455_53349 48 1 Mlig455_034044, Mlig455_060425

Neo: -

Age: -

Region-enriched R8: 4.743/0.03399

 0.966 - - - - 0.966 -

Mlig455_034044 {REF} {Length: 117} {NoTransDecoderORF} {RNA1310_129264}

Mlig455_060425 {REF} {Length: 180} {NoTransDecoderORF} {RNA1310_129264}
23. MligTC455_51603 39 0.81 Mlig455_016769

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_016769 {REF} {Length: 1577} {RNA1509_44500} {RNA1310_22352} {RNA815_21481}
24. MligTC455_14909 13 0.27 Mlig455_002498

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_002498 {REF} {Length: 2555} {NoTransDecoderORF} {RNA1509_58323} {RNA1310_36708} {RNA815_57793}
25. MligTC455_50541 82 1.71 Mlig455_010939

Neo: -

Age: Down-Down-Up

 NFIA 0.963 - - - - 0.963 - Mlig455_010939 {REF} {Length: 3569} {Human: ENSG00000162599, NFIA, nuclear factor I A, [Score=85.1, Expect=1e-16]; ENSG00000147862, NFIB, nuclear factor I B, [Score=84.3, Expect=2e-16]; ENSG00000008441, NFIX, nuclear factor I X, [Score=82.4, Expect=7e-16]; ENSG00000141905, NFIC, nuclear factor I C, [Score=81.6, Expect=1e-15]} {Mouse: ENSMUSG00000028565, Nfia, nuclear factor I/A, [Score=84.7, Expect=9e-17]; ENSMUSG00000008575, Nfib, nuclear factor I/B, [Score=84.3, Expect=1e-16]; ENSMUSG00000055053, Nfic, nuclear factor I/C, [Score=83.2, Expect=2e-16]; ENSMUSG00000001911, Nfix, nuclear factor I/X, [Score=81.6, Expect=9e-16]} {Dmel: FBgn0042696, NfI, Nuclear factor I, [Score=84.7, Expect=1e-16]} {Celegans: WBGene00003592, nfi-1, NFI (Nuclear Factor I) family, [Score=90.9, Expect=1e-18]} {Smed: dd_Smed_v6_12312_0_1, dd_Smed_v6_12312_0_1, [Score=151, Expect=8e-38]} {RNA1310_40008.1} {RNA815_37863}
26. MligTC455_55791 13 0.26 Mlig455_064674

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_064674 {REF} {Length: 343} {NoTransDecoderORF}
27. MligTC455_09802 39 0.81 Mlig455_045247

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_045247 {REF} {Length: 309} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=25.4} {RNA1509_45595} {RNA1310_67684} {RNA815_31014}
28. MligTC455_36096 3 0.06 Mlig455_040358

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_040358 {REF} {Length: 313} {RNA1509_10231} {RNA1310_38128} {RNA815_298.1}
29. MligTC455_41436 50 1.04 Mlig455_038820, Mlig455_038831, Mlig455_038905

Neo: -

Age: Up-Down-Down

 PCDHA1 0.958 - - - - 0.958 -

Mlig455_038820 {REF} {Length: 5696} {Pfam: Cadherin domain [PF00028.19, score=219.7]; Cadherin-like [PF16184.7, score=28.8]; Cadherin-like [PF08266.14, score=20.3]} {Human: ENSG00000204970, PCDHA1, protocadherin alpha 1, [Score=229, Expect=3e-61]; ENSG00000156453, PCDH1, protocadherin 1, [Score=223, Expect=6e-59]; ENSG00000253953, PCDHGB4, protocadherin gamma subfamily B, 4, [Score=218, Expect=9e-58]} {Mouse: ENSMUSG00000103585, Pcdhgb4, protocadherin gamma subfamily B, 4, [Score=227, Expect=5e-61]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=225, Expect=5e-60]; ENSMUSG00000103749, Pcdhgb5, protocadherin gamma subfamily B, 5, [Score=225, Expect=2e-60]; ENSMUSG00000104063, Pcdhgb7, protocadherin gamma subfamily B, 7, [Score=217, Expect=1e-57]; ENSMUSG00000103442, Pcdha1, protocadherin alpha 1, [Score=216, Expect=2e-57]} {Dmel: FBgn0284247, ds, dachsous, [Score=180, Expect=2e-45]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=133, Expect=5e-31]} {Smed: dd_Smed_v6_13040_0_1, dd_Smed_v6_13040_0_1, [RH, Score=379, Expect=7e-114]} {RNA1509_45283} {RNA1310_7504, RNA1509_45283} {RNA1509_45283, RNA815_15214}

Mlig455_038831 {REF} {Length: 3827} {Pfam: Cadherin domain [PF00028.19, score=208.3]; Cadherin-like [PF16184.7, score=26.1]; Cadherin-like [PF08266.14, score=18.5]} {Human: ENSG00000204970, PCDHA1, protocadherin alpha 1, [Score=209, Expect=8e-55]; ENSG00000156453, PCDH1, protocadherin 1, [Score=205, Expect=3e-53]; ENSG00000253953, PCDHGB4, protocadherin gamma subfamily B, 4, [Score=199, Expect=9e-52]; ENSG00000253910, PCDHGB2, protocadherin gamma subfamily B, 2, [Score=199, Expect=6e-52]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=208, Expect=1e-54]; ENSMUSG00000103749, Pcdhgb5, protocadherin gamma subfamily B, 5, [Score=202, Expect=4e-53]; ENSMUSG00000103585, Pcdhgb4, protocadherin gamma subfamily B, 4, [Score=201, Expect=2e-52]} {Dmel: FBgn0024836, stan, starry night, [Score=161, Expect=1e-39]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=130, Expect=3e-30]} {Smed: dd_Smed_v6_13040_0_1, dd_Smed_v6_13040_0_1, [Score=352, Expect=5e-104]} {RNA1509_45283} {RNA1310_7504} {RNA815_15214}

Mlig455_038905 {REF} {Length: 4854} {Pfam: Cadherin domain [PF00028.19, score=220.4]; Cadherin-like [PF16184.7, score=28.3]} {Human: ENSG00000204970, PCDHA1, protocadherin alpha 1, [Score=230, Expect=2e-62]; ENSG00000156453, PCDH1, protocadherin 1, [Score=225, Expect=2e-59]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=227, Expect=2e-60]; ENSMUSG00000103749, Pcdhgb5, protocadherin gamma subfamily B, 5, [Score=224, Expect=3e-60]; ENSMUSG00000103585, Pcdhgb4, protocadherin gamma subfamily B, 4, [Score=223, Expect=6e-60]} {Dmel: FBgn0284247, ds, dachsous, [Score=182, Expect=7e-46]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=151, Expect=1e-36]} {Smed: dd_Smed_v6_13040_0_1, dd_Smed_v6_13040_0_1, [RH, Score=377, Expect=5e-113]} {RNA1509_45283} {RNA1310_7504} {RNA815_15214}
30. MligTC455_05494 51 1.06 Mlig455_004276, Mlig455_004287, Mlig455_004362

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_004276 {REF} {Length: 1694} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.1]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.2]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=151, Expect=1e-41]} {RNA1310_39315} {RNA815_27280}

Mlig455_004287 {REF} {Length: 4218} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.1]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.2]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=151, Expect=1e-41]} {RNA1509_28642} {RNA1310_39315} {RNA815_27280}

Mlig455_004362 {REF} {Length: 400} {NoTransDecoderORF} {RNA1310_149581}
31. MligTC455_16123 16 0.34 Mlig455_017712, Mlig455_017765

Neo: -

Age: -

 GABRA3, GABRA4 0.952 - - - - 0.952 -

Mlig455_017712 {REF} {Length: 1526} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=157.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=96.6]} {Human: ENSG00000109158, GABRA4, gamma-aminobutyric acid type A receptor alpha4 subunit, [RH, Score=284, Expect=3e-89]; ENSG00000113327, GABRG2, gamma-aminobutyric acid type A receptor gamma2 subunit, [RH, Score=280, Expect=2e-88]} {Mouse: ENSMUSG00000020428, Gabra6, gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6, [RH, Score=294, Expect=2e-94]; ENSMUSG00000029211, Gabra4, gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4, [RH, Score=283, Expect=3e-89]} {Dmel: FBgn0030707, CG8916, [Score=346, Expect=4e-114]} {Celegans: WBGene00008551, lgc-36, Ligand-Gated ion Channel, [RH, Score=278, Expect=1e-87]} {Smed: dd_Smed_v6_24908_0_1, dd_Smed_v6_24908_0_1, [Score=404, Expect=2e-138]} {RNA1310_12235.2} {RNA815_15667.1}

Mlig455_017765 {REF} {Length: 1428} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=65.6]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=51.8]} {Human: ENSG00000011677, GABRA3, gamma-aminobutyric acid type A receptor alpha3 subunit, [Score=151, Expect=1e-40]; ENSG00000186297, GABRA5, gamma-aminobutyric acid type A receptor alpha5 subunit, [Score=147, Expect=2e-39]; ENSG00000109158, GABRA4, gamma-aminobutyric acid type A receptor alpha4 subunit, [Score=147, Expect=1e-38]; ENSG00000145863, GABRA6, gamma-aminobutyric acid type A receptor alpha6 subunit, [Score=145, Expect=1e-38]; ENSG00000113327, GABRG2, gamma-aminobutyric acid type A receptor gamma2 subunit, [Score=144, Expect=9e-38]} {Mouse: ENSMUSG00000020428, Gabra6, gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6, [Score=155, Expect=1e-42]} {Dmel: FBgn0030707, CG8916, [Score=199, Expect=1e-58]} {Celegans: WBGene00013914, lgc-37, Ligand-Gated ion Channel, [Score=163, Expect=2e-45]} {Smed: dd_Smed_v6_24908_0_1, dd_Smed_v6_24908_0_1, [Score=209, Expect=2e-63]} {RNA1310_65637} {RNA815_15667.1}
32. MligTC455_08556 40 0.84 Mlig455_020308

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_020308 {REF} {Length: 1035} {NoTransDecoderORF} {RNA1310_87996}
33. MligTC455_39985 28 0.58 Mlig455_022339, Mlig455_022351

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_022339 {REF} {Length: 783} {RNA1509_47318} {RNA1310_125793} {RNA815_2914.1}

Mlig455_022351 {REF} {Length: 1105} {Pfam: WSC domain [PF01822.21, score=64.2]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=64.7, Expect=8e-12]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=51.6, Expect=2e-07]} {RNA1310_59980.1} {RNA815_55549}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA