M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24507

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24507 470 9.78 Mlig455_023223, Mlig455_023224

Neo: -

Age: -

Mlig455_023223 {REF} {Length: 239} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_73518.2} {RNA815_13840}

Mlig455_023224 {REF} {Length: 387} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_19716} {RNA815_13840}

Cumulative graph for MligTC455_24507

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.265 3.57 0.14866 0.76297
RegionR2 1.005 3.57 0.21355 0.57896
RegionR3 0.97 3.57 0.16439 0.68550
RegionR4 -1.37 3.57 0.10514 0.31823
RegionR5 -0.825 3.57 0.19735 0.48589
RegionR6 -0.122 3.57 0.86118 1.00000
RegionR7 1.027 3.57 0.12236 0.66049
RegionR8 1.58 3.57 0.02281 0.29413

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.58 3.57 0.86251 1.00000
RegenerationR2 -1.914 3.57 0.02331 0.25092
RegenerationR3 -2.637 3.57 0.00350 0.10507
RegenerationR4 -0.444 3.57 0.63754 0.92618
RegenerationR5 -1.151 3.57 0.19789 0.63039
RegenerationR6 -1.036 3.57 0.26008 0.60995
RegenerationBL -6.622 3.57 0.00087 0.02074
RegenerationTP -0.03 3.57 0.98989 1.00000


Genes with expression patterns similar to MligTC455_24507

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24507 470 9.78 Mlig455_023223, Mlig455_023224

Neo: -

Age: -

 5 1.000 1.000 1.000 - 1.000 1.000

Mlig455_023223 {REF} {Length: 239} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_73518.2} {RNA815_13840}

Mlig455_023224 {REF} {Length: 387} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_19716} {RNA815_13840}
2. MligTC455_24508 1741 36.26 Mlig455_006045, Mlig455_006046, Mlig455_023285, Mlig455_023286, Mlig455_056744

Neo: -

Age: -

Region-enriched R3: 2.162/0.00074

Regeneration-depleted BL: -4.650
Regeneration-depleted R3: -3.081

 3.75 - 0.993 0.935 - 0.852 0.970

Mlig455_006045 {REF} {Length: 1830} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_27174, RNA1509_32433, RNA1509_34832, RNA1509_41190} {RNA1310_27054.1, RNA1509_27174, RNA1509_32433, RNA1509_34832, RNA1509_41190} {RNA1509_27174, RNA1509_32433, RNA1509_34832, RNA1509_41190, RNA815_12624.1}

Mlig455_006046 {REF} {Length: 1491} {TRANSSPLICED} {RNA1509_41190} {RNA1310_27054.1} {RNA815_12624.1}

Mlig455_023285 {REF} {Length: 1780} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_27054.1} {RNA815_12624.1}

Mlig455_023286 {REF} {Length: 1781} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_27054.1} {RNA815_12624.1}

Mlig455_056744 {REF} {Length: 1491} {TRANSSPLICED} {RNA1509_19154, RNA1509_41190, RNA1509_54970} {RNA1310_27054.1, RNA1509_19154, RNA1509_54970} {RNA1509_19154, RNA1509_54970, RNA815_13840}
3. MligTC455_13923 18 0.38 Mlig455_027566, Mlig455_039121

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_027566 {REF} {Length: 1444} {NoTransDecoderORF} {RNA1509_58025} {RNA1310_89044} {RNA815_59752}

Mlig455_039121 {REF} {Length: 395} {NoTransDecoderORF} {RNA1509_58025} {RNA1310_3355.1} {RNA815_59752}
4. MligTC455_26306 88 1.83 Mlig455_042029

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_042029 {REF} {Length: 1756} {Pfam: Soluble NSF attachment protein, SNAP [PF14938.8, score=172.1]; Tetratricopeptide repeat [PF13424.8, score=21.0]} {Celegans: WBGene00017016, snap-1, SNAP (Soluble NSF Attachment Protein) homolog, [Score=134, Expect=2e-37]} {Smed: dd_Smed_v6_2480_0_1, dd_Smed_v6_2480_0_1, [Score=111, Expect=6e-29]} {RNA1509_30138} {RNA1310_37045} {RNA815_18403}
5. MligTC455_31625 130 2.7 Mlig455_069168

Neo: -

Age: Up-Down-Up

 0.957 - - - - 0.957 - Mlig455_069168 {REF} {Length: 4740} {RNA1509_55535} {RNA1310_35152.1} {RNA815_5895}
6. MligTC455_12526 15 0.31 Mlig455_002108

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_002108 {REF} {Length: 1517} {NoTransDecoderORF} {RNA1310_38807} {RNA815_47102}
7. MligTC455_37927 29 0.59 Mlig455_005071, Mlig455_014052, Mlig455_025140, Mlig455_039469, Mlig455_070126

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_005071 {REF} {Length: 965} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=28.7]; Myb/SANT-like DNA-binding domain [PF13837.8, score=20.2]} {RNA1310_46038}

Mlig455_014052 {REF} {Length: 1489} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=32.8]; Myb/SANT-like DNA-binding domain [PF13837.8, score=22.5]} {RNA1310_68333}

Mlig455_025140 {REF} {Length: 761} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=35.9]; Myb/SANT-like DNA-binding domain [PF13837.8, score=23.0]} {RNA1310_46038}

Mlig455_039469 {REF} {Length: 1212} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=25.1]} {RNA1310_46038} {RNA815_30681}

Mlig455_070126 {REF} {Length: 1489} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=32.8]; Myb/SANT-like DNA-binding domain [PF13837.8, score=22.5]} {RNA1310_68333}
8. MligTC455_48143 323 6.73 Mlig455_032501, Mlig455_068680

Neo: -

Age: -

 SLC22A3, SLC22A7 0.956 0.956 - - - - -

Mlig455_032501 {REF} {Length: 2321} {Pfam: Sugar (and other) transporter [PF00083.26, score=58.7]} {Human: ENSG00000146477, SLC22A3, solute carrier family 22 member 3, [Score=143, Expect=2e-36]; ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=140, Expect=3e-35]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=139, Expect=5e-35]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=137, Expect=3e-34]} {Mouse: ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=151, Expect=3e-39]; ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [Score=145, Expect=2e-37]} {Dmel: FBgn0034479, CG8654, [Score=143, Expect=6e-37]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=122, Expect=1e-29]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=134, Expect=9e-34]} {RNA1509_31974} {RNA1310_8802} {RNA815_4742}

Mlig455_068680 {REF} {Length: 2607} {Pfam: Sugar (and other) transporter [PF00083.26, score=89.9]; Major Facilitator Superfamily [PF07690.18, score=62.1]} {Human: ENSG00000137204, SLC22A7, solute carrier family 22 member 7, [Score=192, Expect=1e-53]; ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=190, Expect=1e-52]} {Mouse: ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=202, Expect=4e-57]} {Dmel: FBgn0034479, CG8654, [Score=196, Expect=1e-55]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=175, Expect=1e-47]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=167, Expect=5e-45]} {RNA1509_31974} {RNA1310_8802, RNA1509_31974} {RNA1509_31974, RNA815_4742}
9. MligTC455_51910 381 7.95 Mlig455_055053

Neo: Int S/G2/M

Age: -

Region-enriched R7: 2.241/0.00092
Region-enriched R4: 2.046/0.00108

 0.956 - - - - 0.956 - Mlig455_055053 {REF} {Length: 1668} {Pfam: TLR4 regulator and MIR-interacting MSAP [PF11938.10, score=23.5]} {RNA1509_13772, RNA1509_29974, RNA1509_36939, RNA1509_39947} {RNA1310_19407, RNA1509_13772, RNA1509_29974, RNA1509_36939, RNA1509_39947} {RNA1509_13772, RNA1509_29974, RNA1509_36939, RNA1509_39947, RNA815_8251}
10. MligTC455_39061 77 1.61 Mlig455_034578

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.706

 0.955 - - - - 0.955 - Mlig455_034578 {REF} {Length: 3300} {Smed: dd_Smed_v6_10049_0_1, dd_Smed_v6_10049_0_1, [RH, Score=131, Expect=2e-32]} {RNA1509_7991} {RNA1310_1271.1} {RNA815_16754}
11. MligTC455_46176 40 0.83 Mlig455_063902

Neo: Int S/G2/M

Age: -

 0.955 - - - - 0.955 - Mlig455_063902 {REF} {Length: 2105} {RNA1509_8906} {RNA1310_18621.1} {RNA815_15980.1}
12. MligTC455_57616 11 0.23 Mlig455_029418

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_029418 {REF} {Length: 242} {NoTransDecoderORF}
13. MligTC455_23254 56 1.16 Mlig455_020486

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_020486 {REF} {Length: 1473} {TRANSSPLICED} {RNA1310_31763} {RNA815_30486}
14. MligTC455_36961 50 1.05 Mlig455_031335

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_031335 {REF} {Length: 519} {RNA1509_53976} {RNA1310_63130} {RNA815_33431}
15. MligTC455_08220 262 5.46 Mlig455_040420, Mlig455_050466

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.762

Region-specific R4: 7.664

 0.953 - - - - 0.953 -

Mlig455_040420 {REF} {Length: 872} {NoTransDecoderORF} {RNA1509_41535} {RNA1310_49483, RNA1509_41535} {RNA1509_41535, RNA815_27007}

Mlig455_050466 {REF} {Length: 515} {NoTransDecoderORF} {RNA1509_42782} {RNA1310_49483, RNA1509_42782} {RNA1509_42782, RNA815_27007}
16. MligTC455_32504 82 1.71 Mlig455_063417, Mlig455_066632

Neo: -

Age: -

 CDK14 0.953 - - 0.953 - - -

Mlig455_063417 {REF} {Length: 3467} {Pfam: Protein kinase domain [PF00069.27, score=215.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=99.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=372, Expect=7e-121]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=357, Expect=1e-115]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=373, Expect=5e-121]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [Score=355, Expect=2e-114]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=393, Expect=2e-128]} {Celegans: WBGene00022519, ZC123.4, [Score=324, Expect=2e-101]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=429, Expect=1e-139]} {RNA1310_26798} {RNA815_16334}

Mlig455_066632 {REF} {Length: 3728} {Pfam: Protein kinase domain [PF00069.27, score=219.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=98.2]; DDHD domain [PF02862.19, score=24.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=347, Expect=3e-110]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=336, Expect=4e-107]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=350, Expect=2e-111]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [Score=336, Expect=1e-106]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=362, Expect=9e-116]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=309, Expect=6e-95]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=381, Expect=1e-120]} {RNA1310_26798} {RNA815_16334}
17. MligTC455_21369 20 0.41 Mlig455_004493

Neo: Germline

Age: -

 0.952 - - - - 0.952 - Mlig455_004493 {REF} {Length: 649} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=184.3]} {RNA1310_256.1} {RNA815_3111}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA