M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32504

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32504 82 1.71 Mlig455_063417, Mlig455_066632

Neo: -

Age: -

 CDK14

Mlig455_063417 {REF} {Length: 3467} {Pfam: Protein kinase domain [PF00069.27, score=215.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=99.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=372, Expect=7e-121]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=357, Expect=1e-115]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=373, Expect=5e-121]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [Score=355, Expect=2e-114]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=393, Expect=2e-128]} {Celegans: WBGene00022519, ZC123.4, [Score=324, Expect=2e-101]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=429, Expect=1e-139]} {RNA1310_26798} {RNA815_16334}

Mlig455_066632 {REF} {Length: 3728} {Pfam: Protein kinase domain [PF00069.27, score=219.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=98.2]; DDHD domain [PF02862.19, score=24.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=347, Expect=3e-110]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=336, Expect=4e-107]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=350, Expect=2e-111]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [Score=336, Expect=1e-106]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=362, Expect=9e-116]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=309, Expect=6e-95]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=381, Expect=1e-120]} {RNA1310_26798} {RNA815_16334}

Cumulative graph for MligTC455_32504

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.834 1.762 0.99961 1.00000
RegionR2 0.635 1.762 0.60942 0.95753
RegionR3 1.791 1.762 0.15223 0.66070
RegionR4 0.708 1.762 0.57334 0.89128
RegionR5 0.999 1.762 0.39900 0.75581
RegionR6 -0.61 1.762 0.89590 1.00000
RegionR7 2.299 1.762 0.10040 0.60538
RegionR8 -2.988 1.762 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.479 1.762 0.99992 1.00000
RegenerationR2 1.213 1.762 0.16447 0.60222
RegenerationR3 -1.217 1.762 0.19884 0.63349
RegenerationR4 -0.261 1.762 0.83580 0.99916
RegenerationR5 -0.976 1.762 0.31770 0.74162
RegenerationR6 0.457 1.762 0.69810 0.92333
RegenerationBL 2.335 1.762 0.12508 0.42004
RegenerationTP -3.515 1.762 1.00000 1.00000


Genes with expression patterns similar to MligTC455_32504

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32504 82 1.71 Mlig455_063417, Mlig455_066632

Neo: -

Age: -

 CDK14 5 1.000 - 1.000 1.000 1.000 1.000

Mlig455_063417 {REF} {Length: 3467} {Pfam: Protein kinase domain [PF00069.27, score=215.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=99.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=372, Expect=7e-121]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=357, Expect=1e-115]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=373, Expect=5e-121]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [Score=355, Expect=2e-114]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=393, Expect=2e-128]} {Celegans: WBGene00022519, ZC123.4, [Score=324, Expect=2e-101]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=429, Expect=1e-139]} {RNA1310_26798} {RNA815_16334}

Mlig455_066632 {REF} {Length: 3728} {Pfam: Protein kinase domain [PF00069.27, score=219.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=98.2]; DDHD domain [PF02862.19, score=24.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=347, Expect=3e-110]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=336, Expect=4e-107]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=350, Expect=2e-111]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [Score=336, Expect=1e-106]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=362, Expect=9e-116]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=309, Expect=6e-95]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=381, Expect=1e-120]} {RNA1310_26798} {RNA815_16334}
2. MligTC455_20800 22 0.46 Mlig455_036668

Neo: Germline

Age: -

 0.992 - - - - - 0.992 Mlig455_036668 {REF} {Length: 967} {RNA1310_38630} {RNA815_25111}
3. MligTC455_45522 524 10.92 Mlig455_024216

Neo: -

Age: -

 SH3GLB1 0.982 - - - - 0.982 - Mlig455_024216 {REF} {Length: 2196} {Pfam: BAR domain [PF03114.20, score=213.0]; BAR domain of APPL family [PF16746.7, score=30.8]; Bin/amphiphysin/Rvs domain for vesicular trafficking [PF10455.11, score=29.7]} {Human: ENSG00000097033, SH3GLB1, SH3 domain containing GRB2 like, endophilin B1, [RH, Score=264, Expect=4e-87]} {Mouse: ENSMUSG00000037062, Sh3glb1, SH3-domain GRB2-like B1 (endophilin), [RH, Score=265, Expect=7e-88]} {Dmel: FBgn0034433, EndoB, Endophilin B, [RH, Score=231, Expect=2e-74]} {Celegans: WBGene00001335, F35A5.8, Endophilin-Related Protein, [RH, Score=227, Expect=3e-73]} {Smed: dd_Smed_v6_1387_0_2, dd_Smed_v6_1387_0_2, [RH, Score=199, Expect=6e-64]} {RNA1509_34163, RNA1509_37386, RNA1509_43220, RNA1509_55485} {RNA1310_19399, RNA1509_34163, RNA1509_37386, RNA1509_43220, RNA1509_55485} {RNA1509_34163, RNA1509_37386, RNA1509_43220, RNA1509_55485, RNA815_8016.2}
4. MligTC455_09148 17 0.35 Mlig455_006518

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_006518 {REF} {Length: 793} {Pfam: Gram-negative bacterial TonB protein C-terminal [PF03544.16, score=21.1]; Choline sulfatase enzyme C terminal [PF12411.10, score=19.2]}
5. MligTC455_18201 2066 43.04 Mlig455_012852

Neo: -

Age: logFC(26M/2M)=-0.426

 TSGA10 0.973 - - - - 0.973 - Mlig455_012852 {REF} {Length: 3652} {TRANSSPLICED} {Pfam: Takusan [PF04822.15, score=19.1]} {Human: ENSG00000135951, TSGA10, testis specific 10, [Score=167, Expect=1e-42]; ENSG00000174799, CEP135, centrosomal protein 135, [Score=159, Expect=4e-39]} {Mouse: ENSMUSG00000036403, Cep135, centrosomal protein 135, [Score=163, Expect=1e-40]; ENSMUSG00000060771, Tsga10, testis specific 10, [Score=157, Expect=2e-39]} {Dmel: FBgn0036480, Cep135, Centrosomal protein 135kDa, [Score=51.2, Expect=5e-06]} {Smed: dd_Smed_v6_5218_0_1, dd_Smed_v6_5218_0_1, [Score=177, Expect=1e-45]} {RNA1509_8974} {RNA1310_4398.1, RNA1509_8974} {RNA1509_8974, RNA815_1443.1}
6. MligTC455_31981 341 7.11 Mlig455_020923

Neo: -

Age: -

 DIS3L2 0.973 - - - - 0.973 - Mlig455_020923 {REF} {Length: 724} {Pfam: DIS3-like exonuclease 2 C terminal [PF17877.3, score=42.2]} {Human: ENSG00000144535, DIS3L2, DIS3 like 3'-5' exoribonuclease 2, [Score=50.8, Expect=7e-08]} {Mouse: ENSMUSG00000053333, Dis3l2, DIS3 like 3'-5' exoribonuclease 2, [Score=53.1, Expect=2e-08]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=49.7, Expect=2e-07]} {Smed: dd_Smed_v6_7044_0_1, dd_Smed_v6_7044_0_1, [Score=68.9, Expect=3e-14]} {RNA1509_57497} {RNA1310_4374.3} {RNA815_1234.1}
7. MligTC455_31982 348 7.25 Mlig455_020999

Neo: -

Age: -

 DIS3L2 0.968 - - - - 0.968 - Mlig455_020999 {REF} {Length: 2751} {TRANSSPLICED} {Pfam: RNB domain [PF00773.21, score=279.9]; DIS3-like exonuclease 2 C terminal [PF17877.3, score=36.6]; Rrp44-like cold shock domain [PF17216.5, score=27.4]; Dis3-like cold-shock domain 2 (CSD2) [PF17849.3, score=23.3]} {Human: ENSG00000144535, DIS3L2, DIS3 like 3'-5' exoribonuclease 2, [Score=358, Expect=3e-110]} {Mouse: ENSMUSG00000053333, Dis3l2, DIS3 like 3'-5' exoribonuclease 2, [Score=366, Expect=1e-113]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [Score=254, Expect=2e-71]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=325, Expect=8e-99]} {Smed: dd_Smed_v6_7044_0_1, dd_Smed_v6_7044_0_1, [Score=344, Expect=5e-106]} {RNA1509_57497} {RNA1310_4374.3} {RNA815_1234.1}
8. MligTC455_22179 26 0.54 Mlig455_032664

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_032664 {REF} {Length: 5190} {Pfam: Glycine rich protein [PF12810.9, score=30.2]} {RNA1310_33363.2} {RNA815_25152}
9. MligTC455_18357 10 0.21 Mlig455_042448

Neo: -

Age: logFC(26M/2M)=-0.393

 NWD2 0.96 - - - - 0.960 - Mlig455_042448 {REF} {Length: 6870} {Pfam: Domain of unknown function (DUF4062) [PF13271.8, score=45.8]; NACHT domain [PF05729.14, score=35.8]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=296, Expect=3e-80]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=304, Expect=7e-83]} {Dmel: FBgn0038397, CG10185, [Score=443, Expect=3e-127]} {Celegans: WBGene00020254, T05C3.2, [Score=403, Expect=4e-114]} {Smed: dd_Smed_v6_11085_0_2, dd_Smed_v6_11085_0_2, [Score=246, Expect=2e-65]} {RNA1509_48979} {RNA1310_12147} {RNA815_29824}
10. MligTC455_26939 72 1.49 Mlig455_033291

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_033291 {REF} {Length: 6212} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.0]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=4e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}
11. MligTC455_43733 869 18.1 Mlig455_034271, Mlig455_034309

Neo: -

Age: Down-Up-Up

 0.956 - - - - 0.956 -

Mlig455_034271 {REF} {Length: 2291} {Pfam: Protein kinase domain [PF00069.27, score=27.1]} {RNA1509_10827} {RNA1310_17438} {RNA815_7916}

Mlig455_034309 {REF} {Length: 2300} {RNA1509_10827} {RNA1310_9412} {RNA815_7916}
12. MligTC455_43734 871 18.15 Mlig455_067307, Mlig455_067323

Neo: -

Age: logFC(26M/2M)=-0.518

 SIK3 0.956 - - - - 0.956 -

Mlig455_067307 {REF} {Length: 3849} {Pfam: Protein kinase domain [PF00069.27, score=49.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=24.7]} {Human: ENSG00000160584, SIK3, SIK family kinase 3, [Score=71.6, Expect=3e-12]; ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [Score=70.5, Expect=5e-12]} {Mouse: ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=70.5, Expect=4e-12]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [Score=70.1, Expect=5e-12]} {Dmel: FBgn0025625, Sik2, Salt-inducible kinase 2, [Score=61.6, Expect=2e-09]} {Celegans: WBGene00006814, unc-82, [Score=61.6, Expect=2e-09]} {Smed: dd_Smed_v6_5124_0_2, dd_Smed_v6_5124_0_2, [Score=68.6, Expect=8e-12]} {RNA1509_10827} {RNA1310_9412, RNA1509_10827} {RNA1509_10827, RNA815_7916}

Mlig455_067323 {REF} {Length: 2835} {Pfam: Protein kinase domain [PF00069.27, score=49.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=24.7]} {Human: ENSG00000160584, SIK3, SIK family kinase 3, [Score=71.6, Expect=3e-12]; ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [Score=70.5, Expect=5e-12]} {Mouse: ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=70.5, Expect=4e-12]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [Score=70.1, Expect=5e-12]} {Dmel: FBgn0025625, Sik2, Salt-inducible kinase 2, [Score=61.6, Expect=2e-09]} {Celegans: WBGene00006814, unc-82, [Score=61.6, Expect=2e-09]} {Smed: dd_Smed_v6_5124_0_2, dd_Smed_v6_5124_0_2, [Score=68.6, Expect=8e-12]} {RNA1509_10827} {RNA1310_9412} {RNA815_7916}
13. MligTC455_24507 470 9.78 Mlig455_023223, Mlig455_023224

Neo: -

Age: -

 0.953 - - 0.953 - - -

Mlig455_023223 {REF} {Length: 239} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_73518.2} {RNA815_13840}

Mlig455_023224 {REF} {Length: 387} {NoTransDecoderORF} {RNA1509_41190} {RNA1310_19716} {RNA815_13840}
14. MligTC455_29737 119 2.48 Mlig455_049700, Mlig455_049706, Mlig455_070465

Neo: -

Age: -

Region-enriched R4: 5.563/0.03218

 0.951 - - - - 0.951 -

Mlig455_049700 {REF} {Length: 1135} {NoTransDecoderORF} {RNA1509_57671} {RNA1310_18142} {RNA815_55954}

Mlig455_049706 {REF} {Length: 1000} {NoTransDecoderORF} {RNA1509_34937} {RNA1310_18142} {RNA815_55954}

Mlig455_070465 {REF} {Length: 884} {NoTransDecoderORF} {RNA1509_34937} {RNA1310_18142} {RNA815_55954}
15. MligTC455_53506 16 0.33 Mlig455_004919, Mlig455_019741, Mlig455_019743

Neo: -

Age: Up-Down-Down

 ITPR1, ITPR2 0.951 - - - - - 0.951

Mlig455_004919 {REF} {Length: 9067} {Pfam: RIH domain [PF01365.23, score=102.9]; RyR and IP3R Homology associated [PF08454.13, score=65.6]; MIR domain [PF02815.21, score=50.6]; Ion transport protein [PF00520.33, score=20.2]} {Human: ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=187, Expect=2e-46]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=183, Expect=2e-45]; ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=182, Expect=5e-45]} {Dmel: FBgn0011286, RyR, Ryanodine receptor, [Score=114, Expect=1e-24]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=137, Expect=8e-32]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [RH, Score=2927, Expect=0.0]} {RNA1509_12464} {RNA1310_155.2} {RNA815_10324}

Mlig455_019741 {REF} {Length: 3103} {Pfam: RyR and IP3R Homology associated [PF08454.13, score=51.6]; Ion transport protein [PF00520.33, score=20.9]} {Human: ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=132, Expect=1e-30]; ENSG00000198838, RYR3, ryanodine receptor 3, [Score=131, Expect=3e-30]; ENSG00000196218, RYR1, ryanodine receptor 1, [Score=129, Expect=2e-29]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=132, Expect=1e-30]; ENSMUSG00000057378, Ryr3, ryanodine receptor 3, [Score=131, Expect=2e-30]; ENSMUSG00000030592, Ryr1, ryanodine receptor 1, skeletal muscle, [Score=128, Expect=2e-29]} {Dmel: FBgn0011286, RyR, Ryanodine receptor, [Score=114, Expect=3e-25]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=137, Expect=2e-32]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [Score=772, Expect=0.0]} {RNA1509_12464} {RNA1310_155.2} {RNA815_21927}

Mlig455_019743 {REF} {Length: 3513} {Pfam: RIH domain [PF01365.23, score=79.3]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=68.3]; MIR domain [PF02815.21, score=62.5]} {Human: ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=161, Expect=3e-39]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=159, Expect=7e-39]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=126, Expect=5e-29]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [Score=1147, Expect=0.0]} {RNA1509_12464} {RNA1310_155.1} {RNA815_101}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA