TomoSeq data search

Data search

Results for MligTC455_24586

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_24586	20	0.41	Mlig455_051919, Mlig455_053126, Mlig455_064052	Neo: - Age: Up-Down-Down	ASPRV1, KCTD1	Mlig455_051919 {REF} {Length: 5292} {Pfam: Phage integrase family [PF00589.24, score=21.0]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=60.8, Expect=3e-09]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=60.8, Expect=3e-09]} {RNA1509_37808} {RNA1310_227.1} {RNA815_2993.1} Mlig455_053126 {REF} {Length: 4200} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=34.1]; Aspartyl protease [PF13650.8, score=28.3]; Aspartyl protease [PF09668.12, score=26.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=23.0]; Zinc knuckle [PF00098.25, score=22.9]; Protein of unknown function (DUF1759) [PF03564.17, score=21.7]} {Human: ENSG00000244617, ASPRV1, aspartic peptidase retroviral like 1, [RH, Score=59.7, Expect=9e-09]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=57.8, Expect=2e-08]} {RNA1509_37808, RNA1509_54359} {RNA1310_391, RNA1509_54359} {RNA1509_54359, RNA815_2993.1} Mlig455_064052 {REF} {Length: 667} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=29.7]; Aspartyl protease [PF13650.8, score=22.4]; Aspartyl protease [PF09668.12, score=20.4]} {Human: ENSG00000244617, ASPRV1, aspartic peptidase retroviral like 1, [Score=50.4, Expect=6e-07]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=52.4, Expect=7e-08]} {RNA1509_30677} {RNA1310_391} {RNA815_131.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_24586

0.41

Mlig455_051919, Mlig455_053126, Mlig455_064052

Neo: -

Age: Up-Down-Down

ASPRV1, KCTD1

Mlig455_051919 {REF} {Length: 5292} {Pfam: Phage integrase family [PF00589.24, score=21.0]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=60.8, Expect=3e-09]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=60.8, Expect=3e-09]} {RNA1509_37808} {RNA1310_227.1} {RNA815_2993.1}

Mlig455_053126 {REF} {Length: 4200} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=34.1]; Aspartyl protease [PF13650.8, score=28.3]; Aspartyl protease [PF09668.12, score=26.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=23.0]; Zinc knuckle [PF00098.25, score=22.9]; Protein of unknown function (DUF1759) [PF03564.17, score=21.7]} {Human: ENSG00000244617, ASPRV1, aspartic peptidase retroviral like 1, [RH, Score=59.7, Expect=9e-09]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=57.8, Expect=2e-08]} {RNA1509_37808, RNA1509_54359} {RNA1310_391, RNA1509_54359} {RNA1509_54359, RNA815_2993.1}

Mlig455_064052 {REF} {Length: 667} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=29.7]; Aspartyl protease [PF13650.8, score=22.4]; Aspartyl protease [PF09668.12, score=20.4]} {Human: ENSG00000244617, ASPRV1, aspartic peptidase retroviral like 1, [Score=50.4, Expect=6e-07]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=52.4, Expect=7e-08]} {RNA1509_30677} {RNA1310_391} {RNA815_131.1}

Cumulative graph for MligTC455_24586

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.966	0.857	1.00000	1.00000
RegionR2	2.742	0.857	0.07244	0.32841
RegionR3	-0.152	0.857	0.99993	1.00000
RegionR4	-0.408	0.857	0.99991	1.00000
RegionR5	-0.147	0.857	0.99991	1.00000
RegionR6	-0.249	0.857	0.99994	1.00000
RegionR7	-0.381	0.857	0.99998	1.00000
RegionR8	-0.438	0.857	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.081	0.857	1.00000	1.00000
RegenerationR2	0.475	0.857	0.70728	0.95867
RegenerationR3	3.792	0.857	0.04279	0.36178
RegenerationR4	3.481	0.857	0.03340	0.29471
RegenerationR5	2.985	0.857	0.04391	0.34357
RegenerationR6	-0.231	0.857	0.99997	1.00000
RegenerationBL	0.279	0.857	0.74890	1.00000
RegenerationTP	4.155	0.857	0.13910	0.55683

Genes with expression patterns similar to MligTC455_24586

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_24586	20	0.41	Mlig455_051919, Mlig455_053126, Mlig455_064052	Neo: - Age: Up-Down-Down	ASPRV1, KCTD1	2	-	-	-	-	1.000	1.000	Mlig455_051919 {REF} {Length: 5292} {Pfam: Phage integrase family [PF00589.24, score=21.0]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=60.8, Expect=3e-09]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=60.8, Expect=3e-09]} {RNA1509_37808} {RNA1310_227.1} {RNA815_2993.1} Mlig455_053126 {REF} {Length: 4200} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=34.1]; Aspartyl protease [PF13650.8, score=28.3]; Aspartyl protease [PF09668.12, score=26.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=23.0]; Zinc knuckle [PF00098.25, score=22.9]; Protein of unknown function (DUF1759) [PF03564.17, score=21.7]} {Human: ENSG00000244617, ASPRV1, aspartic peptidase retroviral like 1, [RH, Score=59.7, Expect=9e-09]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=57.8, Expect=2e-08]} {RNA1509_37808, RNA1509_54359} {RNA1310_391, RNA1509_54359} {RNA1509_54359, RNA815_2993.1} Mlig455_064052 {REF} {Length: 667} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=29.7]; Aspartyl protease [PF13650.8, score=22.4]; Aspartyl protease [PF09668.12, score=20.4]} {Human: ENSG00000244617, ASPRV1, aspartic peptidase retroviral like 1, [Score=50.4, Expect=6e-07]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=52.4, Expect=7e-08]} {RNA1509_30677} {RNA1310_391} {RNA815_131.1}
2.	MligTC455_35504	41	0.84	Mlig455_049183	Neo: - Age: -		0.96	-	-	-	-	-	0.960	Mlig455_049183 {REF} {Length: 1391} {NoTransDecoderORF} {RNA1310_47762} {RNA815_47085}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts