TomoSeq data search

Data search

Results for MligTC455_24778

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_24778	8682	180.88	Mlig455_017187	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.294 Region-enriched R7: 1.507/0.00090	MATN1	Mlig455_017187 {REF} {Length: 5498} {Pfam: von Willebrand factor type A domain [PF00092.30, score=330.9]; von Willebrand factor type A domain [PF13519.8, score=126.3]; von Willebrand factor type A domain [PF13768.8, score=67.2]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=24.6]} {Human: ENSG00000162510, MATN1, matrilin 1, [Score=84.0, Expect=7e-16]; ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=84.0, Expect=2e-15]} {Mouse: ENSMUSG00000040533, Matn1, matrilin 1, cartilage matrix protein, [Score=83.6, Expect=6e-16]; ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=81.3, Expect=1e-14]; ENSMUSG00000032572, Col6a4, collagen, type VI, alpha 4, [Score=80.9, Expect=1e-14]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=77.4, Expect=4e-14]} {RNA1509_14277, RNA1509_40604, RNA1509_724} {RNA1310_1588.1, RNA1509_14277, RNA1509_40604} {RNA1509_14277, RNA1509_40604, RNA815_464}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_24778

8682

180.88

Mlig455_017187

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.294

Region-enriched R7: 1.507/0.00090

MATN1

Mlig455_017187 {REF} {Length: 5498} {Pfam: von Willebrand factor type A domain [PF00092.30, score=330.9]; von Willebrand factor type A domain [PF13519.8, score=126.3]; von Willebrand factor type A domain [PF13768.8, score=67.2]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=24.6]} {Human: ENSG00000162510, MATN1, matrilin 1, [Score=84.0, Expect=7e-16]; ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=84.0, Expect=2e-15]} {Mouse: ENSMUSG00000040533, Matn1, matrilin 1, cartilage matrix protein, [Score=83.6, Expect=6e-16]; ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=81.3, Expect=1e-14]; ENSMUSG00000032572, Col6a4, collagen, type VI, alpha 4, [Score=80.9, Expect=1e-14]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=77.4, Expect=4e-14]} {RNA1509_14277, RNA1509_40604, RNA1509_724} {RNA1310_1588.1, RNA1509_14277, RNA1509_40604} {RNA1509_14277, RNA1509_40604, RNA815_464}

Cumulative graph for MligTC455_24778

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.741	7.492	0.15420	0.77207
RegionR2	-0.37	7.492	0.39641	0.79072
RegionR3	-0.329	7.492	0.38977	0.92001
RegionR4	-0.568	7.492	0.19527	0.47325
RegionR5	-1.02	7.492	0.00983	0.05700
RegionR6	-0.176	7.492	0.64147	1.00000
RegionR7	1.507	7.492	0.00001	0.00090
RegionR8	0.215	7.492	0.61632	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.514	7.492	0.42934	1.00000
RegenerationR2	0.584	7.492	0.23118	0.67852
RegenerationR3	1.118	7.492	0.02295	0.27378
RegenerationR4	1.143	7.492	0.02405	0.24824
RegenerationR5	1.243	7.492	0.01110	0.18618
RegenerationR6	1.284	7.492	0.00807	0.11005
RegenerationBL	0.132	7.492	0.74843	1.00000
RegenerationTP	0.884	7.492	0.04527	0.35345

Genes with expression patterns similar to MligTC455_24778

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_24778	8682	180.88	Mlig455_017187	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.294 Region-enriched R7: 1.507/0.00090	MATN1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_017187 {REF} {Length: 5498} {Pfam: von Willebrand factor type A domain [PF00092.30, score=330.9]; von Willebrand factor type A domain [PF13519.8, score=126.3]; von Willebrand factor type A domain [PF13768.8, score=67.2]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=24.6]} {Human: ENSG00000162510, MATN1, matrilin 1, [Score=84.0, Expect=7e-16]; ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=84.0, Expect=2e-15]} {Mouse: ENSMUSG00000040533, Matn1, matrilin 1, cartilage matrix protein, [Score=83.6, Expect=6e-16]; ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=81.3, Expect=1e-14]; ENSMUSG00000032572, Col6a4, collagen, type VI, alpha 4, [Score=80.9, Expect=1e-14]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=77.4, Expect=4e-14]} {RNA1509_14277, RNA1509_40604, RNA1509_724} {RNA1310_1588.1, RNA1509_14277, RNA1509_40604} {RNA1509_14277, RNA1509_40604, RNA815_464}
2.	MligTC455_46740	11815	246.15	Mlig455_039886	Neo: - Age: - Region-enriched R7: 1.641/0.00015	WSCD2	3.562	-	-	0.857	0.970	0.838	0.897	Mlig455_039886 {REF} {Length: 4970} {Pfam: WSC domain [PF01822.21, score=496.5]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [RH, Score=68.6, Expect=4e-13]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=70.9, Expect=6e-12]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=67.4, Expect=6e-11]} {Celegans: WBGene00009362, F33E2.6, [Score=63.5, Expect=8e-10]} {RNA1509_10624, RNA1509_2420} {RNA1310_1445, RNA1509_10624} {RNA1509_10624, RNA815_405.1}
3.	MligTC455_51110	5002	104.21	Mlig455_040533	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.232 Region-enriched R7: 1.812/0.00045		1.842	-	-	0.952	0.890	-	-	Mlig455_040533 {REF} {Length: 2315} {Pfam: Calpain inhibitor [PF00748.21, score=41.9]} {RNA1509_18906} {RNA1310_53363.1} {RNA815_30685}
4.	MligTC455_43900	2497	52.03	Mlig455_008266, Mlig455_040615	Neo: - Age: Down-Down-Up Regeneration-downregulated BL: -2.170 Regeneration-depleted BL: -2.170		0.954	-	-	-	0.954	-	-	Mlig455_008266 {REF} {Length: 2081} {RNA1509_42441} {RNA1310_16410} {RNA815_11440} Mlig455_040615 {REF} {Length: 2008} {RNA1509_19473, RNA1509_42441} {RNA1310_16410, RNA1509_19473, RNA1509_42441} {RNA1509_19473, RNA1509_42441, RNA815_11440}