M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24809

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24809 537 11.19 Mlig455_003129

Neo: -

Age: -

 SLC11A2 Mlig455_003129 {REF} {Length: 3341} {Pfam: Natural resistance-associated macrophage protein [PF01566.20, score=389.1]} {Human: ENSG00000110911, SLC11A2, solute carrier family 11 member 2, [RH, Score=595, Expect=0.0]; ENSG00000018280, SLC11A1, solute carrier family 11 member 1, [RH, Score=570, Expect=0.0]} {Mouse: ENSMUSG00000023030, Slc11a2, solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2, [RH, Score=622, Expect=0.0]} {Dmel: FBgn0011672, Mvl, Malvolio, [RH, Score=617, Expect=0.0]} {Celegans: WBGene00004876, smf-1, NRAMP-like transporter smf-1, [RH, Score=548, Expect=0.0]} {Smed: dd_Smed_v6_4739_0_1, dd_Smed_v6_4739_0_1, [RH, Score=660, Expect=0.0]} {RNA1509_10227} {RNA1310_10668.1} {RNA815_4424.1}

Cumulative graph for MligTC455_24809

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.722 3.879 0.43580 1.00000
RegionR2 0.796 3.879 0.08487 0.35788
RegionR3 0.026 3.879 0.93834 1.00000
RegionR4 -0.392 3.879 0.32669 0.64460
RegionR5 0.203 3.879 0.50399 0.86723
RegionR6 0.432 3.879 0.21814 0.79730
RegionR7 -0.085 3.879 0.86416 1.00000
RegionR8 -0.257 3.879 0.68854 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.742 3.879 0.22457 0.95604
RegenerationR2 -0.119 3.879 0.75643 0.97535
RegenerationR3 0.337 3.879 0.42295 0.81746
RegenerationR4 0.25 3.879 0.54006 0.88849
RegenerationR5 0.069 3.879 0.84423 1.00000
RegenerationR6 -0.202 3.879 0.64786 0.89714
RegenerationBL -1.187 3.879 0.12311 0.41669
RegenerationTP 0.723 3.879 0.22028 0.66348


Genes with expression patterns similar to MligTC455_24809

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24809 537 11.19 Mlig455_003129

Neo: -

Age: -

 SLC11A2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_003129 {REF} {Length: 3341} {Pfam: Natural resistance-associated macrophage protein [PF01566.20, score=389.1]} {Human: ENSG00000110911, SLC11A2, solute carrier family 11 member 2, [RH, Score=595, Expect=0.0]; ENSG00000018280, SLC11A1, solute carrier family 11 member 1, [RH, Score=570, Expect=0.0]} {Mouse: ENSMUSG00000023030, Slc11a2, solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2, [RH, Score=622, Expect=0.0]} {Dmel: FBgn0011672, Mvl, Malvolio, [RH, Score=617, Expect=0.0]} {Celegans: WBGene00004876, smf-1, NRAMP-like transporter smf-1, [RH, Score=548, Expect=0.0]} {Smed: dd_Smed_v6_4739_0_1, dd_Smed_v6_4739_0_1, [RH, Score=660, Expect=0.0]} {RNA1509_10227} {RNA1310_10668.1} {RNA815_4424.1}
2. MligTC455_50713 1646 34.29 Mlig455_004991

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.627

Region-enriched R5: 1.244/0.00002
Region-enriched R4: 1.149/0.00387

 MAP1LC3C 1.772 - - - - 0.822 0.950 Mlig455_004991 {REF} {Length: 1864} {TRANSSPLICED} {Pfam: Autophagy protein Atg8 ubiquitin like [PF02991.18, score=130.5]; Ubiquitin-like autophagy protein Apg12 [PF04110.15, score=20.0]} {Human: ENSG00000197769, MAP1LC3C, microtubule associated protein 1 light chain 3 gamma, [Score=150, Expect=4e-47]} {Mouse: ENSMUSG00000031812, Map1lc3b, microtubule-associated protein 1 light chain 3 beta, [Score=125, Expect=6e-38]; ENSMUSG00000027602, Map1lc3a, microtubule-associated protein 1 light chain 3 alpha, [Score=122, Expect=9e-37]} {Dmel: FBgn0052672, Atg8a, Autophagy-related 8a, [Score=98.6, Expect=2e-27]} {Celegans: WBGene00002981, lgg-2, [RH, Score=107, Expect=8e-31]} {Smed: dd_Smed_v6_1441_0_1, dd_Smed_v6_1441_0_1, [Score=104, Expect=9e-30]} {RNA1509_20665, RNA1509_27527, RNA1509_29537, RNA1509_44101} {RNA1310_32049.1, RNA1509_20665, RNA1509_27527, RNA1509_29537, RNA1509_44101} {RNA1509_20665, RNA1509_27527, RNA1509_29537, RNA1509_44101, RNA815_14707}
3. MligTC455_33882 644 13.41 Mlig455_055943

Neo: -

Age: -

 STX12 0.98 - - - - - 0.980 Mlig455_055943 {REF} {Length: 3583} {TRANSSPLICED} {Pfam: SNARE domain [PF05739.21, score=62.2]; Syntaxin-like protein [PF14523.8, score=58.6]} {Human: ENSG00000117758, STX12, syntaxin 12, [Score=132, Expect=1e-36]} {Mouse: ENSMUSG00000019998, Stx7, syntaxin 7, [Score=126, Expect=1e-34]; ENSMUSG00000028879, Stx12, syntaxin 12, [Score=125, Expect=2e-34]} {Dmel: FBgn0267849, Syx7, Syntaxin 7, [Score=108, Expect=8e-28]} {Celegans: WBGene00009478, syx-7, SYntaXin, [Score=95.9, Expect=2e-23]} {Smed: dd_Smed_v6_4152_0_1, dd_Smed_v6_4152_0_1, [Score=107, Expect=4e-28]} {RNA1509_15629, RNA1509_38250, RNA1509_55825} {RNA1310_27494, RNA1509_15629, RNA1509_55825} {RNA1509_15629, RNA1509_55825, RNA815_14197}
4. MligTC455_51346 1159 24.15 Mlig455_069672

Neo: -

Age: Up-Down-Up

 PRDX5 0.98 - - - - - 0.980 Mlig455_069672 {REF} {Length: 1869} {TRANSSPLICED} {Pfam: Redoxin [PF08534.12, score=108.5]; AhpC/TSA family [PF00578.23, score=44.1]} {Human: ENSG00000126432, PRDX5, peroxiredoxin 5, [Score=132, Expect=8e-39]} {Mouse: ENSMUSG00000024953, Prdx5, peroxiredoxin 5, [Score=123, Expect=2e-35]} {Dmel: FBgn0038570, Prx5, Peroxiredoxin 5, [Score=139, Expect=4e-42]} {Smed: dd_Smed_v6_1290_0_1, dd_Smed_v6_1290_0_1, [Score=157, Expect=2e-49]} {RNA1509_41717, RNA1509_58546} {RNA1310_37609, RNA1509_41717, RNA1509_58546} {RNA1509_41717, RNA1509_58546, RNA815_25605}
5. MligTC455_39051 649 13.51 Mlig455_009777, Mlig455_054926

Neo: -

Age: -

 0.96 - - - - - 0.960

Mlig455_009777 {REF} {Length: 1081} {NoTransDecoderORF} {RNA1509_31588, RNA1509_38997} {RNA1310_28624.1, RNA1509_31588, RNA1509_38997} {RNA1509_31588, RNA1509_38997, RNA815_15427}

Mlig455_054926 {REF} {Length: 1048} {NoTransDecoderORF} {RNA1509_38997} {RNA1310_28624.1} {RNA815_15427}
6. MligTC455_20308 614 12.79 Mlig455_022336

Neo: -

Age: -

 PLPP1 0.955 - - - - - 0.955 Mlig455_022336 {REF} {Length: 2324} {TRANSSPLICED} {Pfam: PAP2 superfamily [PF01569.23, score=92.7]} {Human: ENSG00000067113, PLPP1, phospholipid phosphatase 1, [Score=131, Expect=2e-35]; ENSG00000141934, PLPP2, phospholipid phosphatase 2, [Score=128, Expect=3e-34]} {Mouse: ENSMUSG00000021759, Plpp1, phospholipid phosphatase 1, [RH, Score=134, Expect=8e-37]} {Dmel: FBgn0037166, CG11426, [RH, Score=137, Expect=2e-37]} {Celegans: WBGene00018756, F53C3.13, [Score=125, Expect=3e-33]} {Smed: dd_Smed_v6_1907_0_1, dd_Smed_v6_1907_0_1, [Score=120, Expect=1e-31]} {RNA1509_45886, RNA1509_5086} {RNA1310_10493.1, RNA1509_45886, RNA1509_5086} {RNA1509_45886, RNA1509_5086, RNA815_8680.2}
7. MligTC455_53443 302 6.3 Mlig455_057740

Neo: -

Age: logFC(26M/2M)=0.560

 NUP98 0.955 - - - - - 0.955 Mlig455_057740 {REF} {Length: 3802} {TRANSSPLICED} {Pfam: Nuclear protein 96 [PF12110.10, score=234.9]} {Human: ENSG00000110713, NUP98, nucleoporin 98, [RH, Score=224, Expect=1e-62]} {Mouse: ENSMUSG00000063550, Nup98, nucleoporin 98, [RH, Score=239, Expect=3e-66]} {Dmel: FBgn0039120, Nup98-96, Nucleoporin 98-96kD, [RH, Score=212, Expect=4e-57]} {Celegans: WBGene00003796, npp-10, Nuclear pore complex protein Nup98-Nup96 Nuclear pore complex protein Nup98 Nuclear pore complex protein Nup96, [RH, Score=124, Expect=1e-28]} {Smed: dd_Smed_v6_5347_0_1, dd_Smed_v6_5347_0_1, [RH, Score=196, Expect=3e-52]} {RNA1509_11771} {RNA1310_8788} {RNA815_6858}
8. MligTC455_36811 5077 105.77 Mlig455_009072, Mlig455_009087, Mlig455_058111

Neo: -

Age: -

 EIF4H 0.954 - - - - - 0.954

Mlig455_009072 {REF} {Length: 2686} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.0]} {Human: ENSG00000106682, EIF4H, eukaryotic translation initiation factor 4H, [Score=99.0, Expect=8e-24]} {Mouse: ENSMUSG00000040731, Eif4h, eukaryotic translation initiation factor 4H, [Score=101, Expect=6e-25]} {Dmel: FBgn0262734, eIF4H1, eukaryotic translation initiation factor 4H1, [Score=89.0, Expect=5e-20]} {Celegans: WBGene00011156, R09B3.3, [Score=47.0, Expect=6e-07]} {Smed: dd_Smed_v6_4137_0_1, dd_Smed_v6_4137_0_1, [RH, Score=117, Expect=9e-31]} {RNA1509_59418} {RNA1310_23392.1} {RNA815_343.1}

Mlig455_009087 {REF} {Length: 2504} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.2]} {Human: ENSG00000106682, EIF4H, eukaryotic translation initiation factor 4H, [Score=99.8, Expect=1e-24]} {Mouse: ENSMUSG00000040731, Eif4h, eukaryotic translation initiation factor 4H, [Score=102, Expect=7e-26]} {Dmel: FBgn0262734, eIF4H1, eukaryotic translation initiation factor 4H1, [Score=90.9, Expect=3e-21]} {Celegans: WBGene00011156, R09B3.3, [Score=45.4, Expect=1e-06]} {Smed: dd_Smed_v6_4137_0_1, dd_Smed_v6_4137_0_1, [RH, Score=117, Expect=2e-31]} {RNA1509_20638, RNA1509_42318} {RNA1310_23392.1, RNA1509_20638, RNA1509_42318} {RNA1509_20638, RNA1509_42318, RNA815_343.1}

Mlig455_058111 {REF} {Length: 2515} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.2]} {Human: ENSG00000106682, EIF4H, eukaryotic translation initiation factor 4H, [Score=99.4, Expect=2e-24]} {Mouse: ENSMUSG00000040731, Eif4h, eukaryotic translation initiation factor 4H, [Score=102, Expect=1e-25]} {Dmel: FBgn0262734, eIF4H1, eukaryotic translation initiation factor 4H1, [Score=89.7, Expect=1e-20]} {Celegans: WBGene00011156, R09B3.3, [Score=45.4, Expect=1e-06]} {Smed: dd_Smed_v6_4137_0_1, dd_Smed_v6_4137_0_1, [RH, Score=117, Expect=3e-31]} {RNA1509_20638, RNA1509_59418} {RNA1310_23392.1, RNA1509_59418} {RNA1509_59418, RNA815_343.1}
9. MligTC455_45601 917 19.11 Mlig455_009807

Neo: -

Age: -

 SLC15A4 0.954 - - - - - 0.954 Mlig455_009807 {REF} {Length: 2847} {TRANSSPLICED} {Pfam: POT family [PF00854.23, score=234.1]} {Human: ENSG00000139370, SLC15A4, solute carrier family 15 member 4, [RH, Score=309, Expect=3e-96]} {Mouse: ENSMUSG00000029416, Slc15a4, solute carrier family 15, member 4, [RH, Score=305, Expect=8e-95]} {Celegans: WBGene00003877, pept-1, Peptide transporter family 1, [Score=77.4, Expect=2e-14]} {Smed: dd_Smed_v6_8178_0_1, dd_Smed_v6_8178_0_1, [RH, Score=254, Expect=9e-76]} {RNA1509_31535, RNA1509_42147} {RNA1310_3190.1, RNA1509_42147} {RNA1509_42147, RNA815_1889}
10. MligTC455_32608 378 7.88 Mlig455_047029

Neo: -

Age: -

 CSTF3 0.952 - - - - - 0.952 Mlig455_047029 {REF} {Length: 3606} {TRANSSPLICED} {Pfam: Suppressor of forked protein (Suf) [PF05843.16, score=264.1]} {Human: ENSG00000176102, CSTF3, cleavage stimulation factor subunit 3, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000027176, Cstf3, cleavage stimulation factor, 3' pre-RNA, subunit 3, [RH, Score=817, Expect=0.0]} {Dmel: FBgn0003559, su(f), suppressor of forked, [RH, Score=741, Expect=0.0]} {Celegans: WBGene00006307, suf-1, SUppressor-of-Forked (Drosophila) homolog, [RH, Score=634, Expect=0.0]} {Smed: dd_Smed_v6_2751_0_1, dd_Smed_v6_2751_0_1, [RH, Score=852, Expect=0.0]} {RNA1509_46620, RNA1509_51439, RNA1509_6273} {RNA1310_9060, RNA1509_46620, RNA1509_51439} {RNA1509_46620, RNA1509_51439, RNA815_6112}
11. MligTC455_44446 996 20.76 Mlig455_045476, Mlig455_050958

Neo: -

Age: Down-Down-Up

 TM2D3 0.951 - - - - - 0.951

Mlig455_045476 {REF} {Length: 1825} {TRANSSPLICED} {Pfam: TM2 domain [PF05154.18, score=46.9]} {Human: ENSG00000184277, TM2D3, TM2 domain containing 3, [RH, Score=159, Expect=1e-48]} {Mouse: ENSMUSG00000078681, Tm2d3, TM2 domain containing 3, [RH, Score=160, Expect=2e-48]} {Dmel: FBgn0000077, amx, almondex, [RH, Score=171, Expect=2e-52]} {Celegans: WBGene00016567, C41D11.9, TM2 domain-containing protein C41D11.9, [RH, Score=138, Expect=5e-41]} {Smed: dd_Smed_v6_11122_0_1, dd_Smed_v6_11122_0_1, [RH, Score=146, Expect=4e-44]} {RNA1509_53492} {RNA1310_36112, RNA1509_53492} {RNA1509_53492, RNA815_17989}

Mlig455_050958 {REF} {Length: 1631} {TRANSSPLICED} {RNA1509_53492, RNA1509_57653} {RNA1310_19149.1, RNA1509_57653} {RNA1509_57653, RNA815_17989}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA