M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24930

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24930 43 0.89 Mlig455_013159

Neo: -

Age: -

 AKAP7 Mlig455_013159 {REF} {Length: 1625} {TRANSSPLICED} {Pfam: AKAP7 2'5' RNA ligase-like domain [PF10469.11, score=91.6]; 2'-5' RNA ligase superfamily [PF13563.8, score=31.0]} {Human: ENSG00000118507, AKAP7, A-kinase anchoring protein 7, [Score=68.6, Expect=5e-13]} {RNA1509_38665} {RNA1310_8587.1} {RNA815_36346}

Cumulative graph for MligTC455_24930

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -8.999 1.272 0.05586 0.54875
RegionR2 2.312 1.272 0.32350 0.71569
RegionR3 0.21 1.272 0.81619 1.00000
RegionR4 -0.539 1.272 0.97252 1.00000
RegionR5 2.694 1.272 0.01109 0.06221
RegionR6 2.3 1.272 0.08890 0.54938
RegionR7 1.56 1.272 0.37150 1.00000
RegionR8 0.462 1.272 0.79532 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.921 1.272 1.00000 1.00000
RegenerationR2 -0.964 1.272 0.34368 0.77762
RegenerationR3 2.951 1.272 0.02871 0.30483
RegenerationR4 0.975 1.272 0.33938 0.77110
RegenerationR5 0.733 1.272 0.28249 0.71149
RegenerationR6 1.043 1.272 0.38070 0.72175
RegenerationBL 1.52 1.272 0.38725 0.75563
RegenerationTP -1.488 1.272 0.50379 0.90265


Genes with expression patterns similar to MligTC455_24930

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24930 43 0.89 Mlig455_013159

Neo: -

Age: -

 AKAP7 3 1.000 1.000 - - - 1.000 Mlig455_013159 {REF} {Length: 1625} {TRANSSPLICED} {Pfam: AKAP7 2'5' RNA ligase-like domain [PF10469.11, score=91.6]; 2'-5' RNA ligase superfamily [PF13563.8, score=31.0]} {Human: ENSG00000118507, AKAP7, A-kinase anchoring protein 7, [Score=68.6, Expect=5e-13]} {RNA1509_38665} {RNA1310_8587.1} {RNA815_36346}
2. MligTC455_24929 34 0.72 Mlig455_011903

Neo: -

Age: Down-Up-Down

 AKAP7 1.985 0.986 0.999 - - - - Mlig455_011903 {REF} {Length: 2384} {TRANSSPLICED} {Pfam: AKAP7 2'5' RNA ligase-like domain [PF10469.11, score=208.2]; 2'-5' RNA ligase superfamily [PF13563.8, score=61.6]; LigT like Phosphoesterase [PF02834.18, score=26.9]; Domain of unknown function (DUF1868) [PF08975.12, score=23.5]; Coronavirus NS2A protein [PF05213.14, score=22.7]} {Human: ENSG00000118507, AKAP7, A-kinase anchoring protein 7, [RH, Score=75.1, Expect=4e-14]} {Mouse: ENSMUSG00000039166, Akap7, A kinase (PRKA) anchor protein 7, [RH, Score=70.5, Expect=7e-13]} {RNA1509_38665} {RNA1310_8587.1} {RNA815_20918}
3. MligTC455_33344 32 0.66 Mlig455_002534

Neo: -

Age: Up-Down-Down

 0.974 - - - - - 0.974 Mlig455_002534 {REF} {Length: 4448} {RNA1509_26266} {RNA1310_121715} {RNA815_60971}
4. MligTC455_30780 50 1.05 Mlig455_033760

Neo: Irradiation

Age: -

 ALG13 0.958 - - - - - 0.958 Mlig455_033760 {REF} {Length: 3996} {Human: ENSG00000101901, ALG13, ALG13, UDP-N-acetylglucosaminyltransferase subunit, [RH, Score=94.0, Expect=4e-19]} {Mouse: ENSMUSG00000036990, Otud4, OTU domain containing 4, [Score=77.4, Expect=4e-14]} {RNA1509_19781, RNA1509_51304} {RNA1310_7225.1, RNA1509_19781, RNA1509_51304} {RNA1509_19781, RNA1509_51304, RNA815_3492}
5. MligTC455_18372 329 6.86 Mlig455_046428, Mlig455_046471

Neo: -

Age: -

Region-enriched R2: 2.381/0.02014

 0.957 - - - - - 0.957

Mlig455_046428 {REF} {Length: 4464} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=46.6]; Zinc finger, C2H2 type [PF00096.28, score=32.8]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=23.3]; C2H2 type zinc-finger (1 copy) [PF16293.7, score=20.6]} {RNA1509_21763} {RNA1310_9886.1, RNA1509_21763} {RNA1509_21763, RNA815_7892}

Mlig455_046471 {REF} {Length: 3283} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=47.2]; Zinc finger, C2H2 type [PF00096.28, score=32.7]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=23.4]; C2H2 type zinc-finger (1 copy) [PF16293.7, score=20.3]} {RNA1509_21763} {RNA1310_9886.1} {RNA815_7892}
6. MligTC455_47042 396 8.25 Mlig455_033600, Mlig455_033705

Neo: Neoblast, stringent

Age: -

 ORC5 0.952 - - - - - 0.952

Mlig455_033600 {REF} {Length: 1452} {Pfam: Origin recognition complex (ORC) subunit 5 C-terminus [PF14630.8, score=33.2]} {RNA1310_72659} {RNA815_35692.2}

Mlig455_033705 {REF} {Length: 2942} {Pfam: Origin recognition complex (ORC) subunit 5 C-terminus [PF14630.8, score=81.6]; AAA ATPase domain [PF13191.8, score=40.1]; AAA domain [PF13401.8, score=22.0]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=20.2]} {Human: ENSG00000164815, ORC5, origin recognition complex subunit 5, [RH, Score=74.7, Expect=5e-14]} {Dmel: FBgn0015271, Orc5, Origin recognition complex subunit 5, [Score=66.2, Expect=2e-11]} {RNA1310_42091} {RNA815_35692.1}
7. MligTC455_46980 242 5.04 Mlig455_068084

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.909

Region-enriched R5: 2.025/0.02232

 SLC25A51 0.95 - - - - - 0.950 Mlig455_068084 {REF} {Length: 2595} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=115.8]} {Human: ENSG00000122696, SLC25A51, solute carrier family 25 member 51, [RH, Score=214, Expect=8e-68]} {Mouse: ENSMUSG00000045973, Slc25a51, solute carrier family 25, member 51, [RH, Score=208, Expect=8e-66]} {Dmel: FBgn0039741, CG7943, [RH, Score=177, Expect=2e-53]} {Celegans: WBGene00011858, T20D3.5, [RH, Score=141, Expect=8e-41]} {Smed: dd_Smed_v6_8610_0_1, dd_Smed_v6_8610_0_1, [RH, Score=183, Expect=1e-56]} {RNA1509_15551} {RNA1310_23947} {RNA815_5386}
8. MligTC455_54059 396 8.24 Mlig455_054904, Mlig455_065608

Neo: Irradiation

Age: -

 0.95 - - - - - 0.950

Mlig455_054904 {REF} {Length: 1225} {TRANSSPLICED} {RNA1509_27599} {RNA1310_51634} {RNA815_28212}

Mlig455_065608 {REF} {Length: 1223} {TRANSSPLICED} {RNA1509_27599, RNA1509_41652} {RNA1310_51634, RNA1509_27599, RNA1509_41652} {RNA1509_27599, RNA1509_41652, RNA815_28212}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA