TomoSeq data search

Data search

Results for MligTC455_24955

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_24955

868

18.09

Mlig455_000650

Neo: -

Age: -

Region-enriched R4: 1.432/0.02098
Region-enriched R5: 1.034/0.01695

RTF1

Mlig455_000650 {REF} {Length: 3574} {TRANSSPLICED} {Pfam: Plus-3 domain [PF03126.20, score=117.6]} {Human: ENSG00000137815, RTF1, RTF1 homolog, Paf1/RNA polymerase II complex component, [RH, Score=134, Expect=8e-36]} {Mouse: ENSMUSG00000027304, Rtf1, RTF1, Paf1/RNA polymerase II complex component, [RH, Score=314, Expect=1e-96]} {Dmel: FBgn0051702, CG31702, [RH, Score=102, Expect=7e-23]} {Smed: dd_Smed_v6_4360_0_1, dd_Smed_v6_4360_0_1, [RH, Score=256, Expect=2e-76]} {RNA1509_4448} {RNA1310_11147.2, RNA1509_4448} {RNA1509_4448, RNA815_1145}

Cumulative graph for MligTC455_24955

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.719	4.527	0.61033	1.00000
RegionR2	-0.32	4.527	0.50597	0.88484
RegionR3	0.221	4.527	0.56431	1.00000
RegionR4	1.432	4.527	0.00247	0.02098
RegionR5	1.034	4.527	0.00193	0.01695
RegionR6	-0.037	4.527	0.92859	1.00000
RegionR7	-0.085	4.527	0.86306	1.00000
RegionR8	-1.527	4.527	0.02988	0.33692

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.764	4.527	0.27153	0.97513
RegenerationR2	0.036	4.527	0.92391	1.00000
RegenerationR3	-0.279	4.527	0.49193	0.85474
RegenerationR4	-0.511	4.527	0.23653	0.68565
RegenerationR5	-0.198	4.527	0.58826	0.90493
RegenerationR6	-0.138	4.527	0.74701	0.95073
RegenerationBL	-0.019	4.527	0.97392	1.00000
RegenerationTP	0.318	4.527	0.58738	0.95412

Genes with expression patterns similar to MligTC455_24955

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_24955	868	18.09	Mlig455_000650	Neo: - Age: - Region-enriched R4: 1.432/0.02098 Region-enriched R5: 1.034/0.01695	RTF1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_000650 {REF} {Length: 3574} {TRANSSPLICED} {Pfam: Plus-3 domain [PF03126.20, score=117.6]} {Human: ENSG00000137815, RTF1, RTF1 homolog, Paf1/RNA polymerase II complex component, [RH, Score=134, Expect=8e-36]} {Mouse: ENSMUSG00000027304, Rtf1, RTF1, Paf1/RNA polymerase II complex component, [RH, Score=314, Expect=1e-96]} {Dmel: FBgn0051702, CG31702, [RH, Score=102, Expect=7e-23]} {Smed: dd_Smed_v6_4360_0_1, dd_Smed_v6_4360_0_1, [RH, Score=256, Expect=2e-76]} {RNA1509_4448} {RNA1310_11147.2, RNA1509_4448} {RNA1509_4448, RNA815_1145}
2.	MligTC455_44886	664	13.83	Mlig455_009418	Neo: Int S/G2/M Age: Down-Up-Down Region-enriched R5: 1.267/0.00151		1.854	-	-	-	0.901	0.953	-	Mlig455_009418 {REF} {Length: 2273} {TRANSSPLICED} {RNA1509_19251} {RNA1310_6205.2, RNA1509_19251} {RNA1509_19251, RNA815_3904}
3.	MligTC455_30136	1677	34.93	Mlig455_043470	Neo: - Age: -	CLUH	0.971	-	-	-	0.971	-	-	Mlig455_043470 {REF} {Length: 6289} {TRANSSPLICED} {Pfam: Clustered mitochondria [PF13236.8, score=232.4]; Translation initiation factor eIF3 subunit 135 [PF12807.9, score=115.2]; Tetratricopeptide repeat [PF13424.8, score=71.0]; Mitochondrial function, CLU-N-term [PF15044.8, score=45.3]; Tetratricopeptide repeat [PF13374.8, score=36.8]} {Human: ENSG00000132361, CLUH, clustered mitochondria homolog, [RH, Score=557, Expect=2e-175]} {Mouse: ENSMUSG00000020741, Cluh, clustered mitochondria (cluA/CLU1) homolog, [RH, Score=560, Expect=4e-176]} {Dmel: FBgn0034087, clu, clueless, [RH, Score=552, Expect=1e-171]} {Celegans: WBGene00000550, clu-1, Clustered mitochondria protein homolog, [RH, Score=597, Expect=0.0]} {Smed: dd_Smed_v6_1597_0_1, dd_Smed_v6_1597_0_1, [RH, Score=554, Expect=3e-174]} {RNA1509_1206, RNA1509_21894} {RNA1310_185.1, RNA1509_21894} {RNA1509_21894, RNA815_370}
4.	MligTC455_44715	358	7.45	Mlig455_057174	Neo: - Age: -	STX12	0.967	-	-	-	-	0.967	-	Mlig455_057174 {REF} {Length: 1976} {TRANSSPLICED} {Pfam: SNARE domain [PF05739.21, score=53.3]; Syntaxin-like protein [PF14523.8, score=38.2]} {Human: ENSG00000117758, STX12, syntaxin 12, [Score=81.3, Expect=1e-17]} {Mouse: ENSMUSG00000028879, Stx12, syntaxin 12, [Score=73.2, Expect=8e-15]} {Dmel: FBgn0036341, Syx13, Syntaxin 13, [Score=67.4, Expect=7e-13]} {Celegans: WBGene00009478, syx-7, SYntaXin, [Score=63.5, Expect=9e-12]} {Smed: dd_Smed_v6_4152_0_1, dd_Smed_v6_4152_0_1, [Score=71.6, Expect=1e-14]} {RNA1509_10705, RNA1509_42747} {RNA1310_13588, RNA1509_42747} {RNA1509_42747, RNA815_16268}
5.	MligTC455_35289	1254	26.13	Mlig455_067473	Neo: - Age: - Region-enriched R3: 1.618/0.02719 Region-enriched R5: 1.534/0.01377	RNF13	0.959	-	-	-	-	0.959	-	Mlig455_067473 {REF} {Length: 3073} {TRANSSPLICED} {Pfam: RING-like zinc finger [PF17123.7, score=49.6]; Ring finger domain [PF13639.8, score=43.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.6]; PA domain [PF02225.24, score=29.4]; RING-type zinc-finger [PF13445.8, score=26.9]; RING-H2 zinc finger domain [PF12678.9, score=25.1]; zinc-RING finger domain [PF14634.8, score=24.6]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.7]; Prokaryotic RING finger family 4 [PF14447.8, score=19.8]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [Score=186, Expect=1e-53]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [Score=187, Expect=2e-54]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [Score=147, Expect=1e-38]} {Celegans: WBGene00007666, C18B12.4, [Score=136, Expect=4e-35]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=92.8, Expect=6e-20]} {RNA1509_20920} {RNA1310_5556.1, RNA1509_20920} {RNA1509_20920, RNA815_17094}
6.	MligTC455_43316	1100	22.93	Mlig455_020282	Neo: Germline Age: - Region-specific R4: 1.839	TMEM101	0.957	-	-	-	-	0.957	-	Mlig455_020282 {REF} {Length: 1984} {TRANSSPLICED} {Pfam: TMEM101 protein family [PF15111.8, score=94.9]} {Human: ENSG00000091947, TMEM101, transmembrane protein 101, [RH, Score=61.6, Expect=1e-10]} {Mouse: ENSMUSG00000020921, Tmem101, transmembrane protein 101, [RH, Score=62.4, Expect=4e-11]} {Smed: dd_Smed_v6_9613_0_1, dd_Smed_v6_9613_0_1, [RH, Score=83.6, Expect=4e-19]} {RNA1509_14384} {RNA1310_32209, RNA1509_14384} {RNA1509_14384, RNA815_16851}
7.	MligTC455_46687	550	11.46	Mlig455_053230, Mlig455_065057	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.429	MAP3K19	0.956	-	-	-	0.956	-	-	Mlig455_053230 {REF} {Length: 2458} {Pfam: Protein kinase domain [PF00069.27, score=169.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=139.3]; Ankyrin repeats (many copies) [PF13637.8, score=38.0]; Ankyrin repeats (3 copies) [PF12796.9, score=34.6]; Fungal protein kinase [PF17667.3, score=26.9]; Ankyrin repeat [PF13606.8, score=22.3]; ABC1 atypical kinase-like domain [PF03109.18, score=20.7]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=147, Expect=3e-36]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=150, Expect=3e-37]} {Dmel: FBgn0035001, Slik, Sterile20-like kinase, [Score=140, Expect=2e-34]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=125, Expect=1e-29]} {Smed: dd_Smed_v6_2030_0_9, dd_Smed_v6_2030_0_9, [Score=132, Expect=4e-33]} {RNA1509_11461} {RNA1310_9478.1} {RNA815_3045} Mlig455_065057 {REF} {Length: 2585} {Pfam: Protein kinase domain [PF00069.27, score=169.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=139.1]; Ankyrin repeats (many copies) [PF13637.8, score=35.3]; Ankyrin repeats (3 copies) [PF12796.9, score=33.8]; Fungal protein kinase [PF17667.3, score=26.8]; Ankyrin repeat [PF13606.8, score=21.8]; ABC1 atypical kinase-like domain [PF03109.18, score=20.4]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=146, Expect=7e-36]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=149, Expect=7e-38]} {Dmel: FBgn0035001, Slik, Sterile20-like kinase, [Score=140, Expect=4e-34]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=125, Expect=1e-29]} {Smed: dd_Smed_v6_2030_0_11, dd_Smed_v6_2030_0_11, [Score=132, Expect=4e-33]} {RNA1509_11461} {RNA1310_9478.1, RNA1509_11461} {RNA1509_11461, RNA815_3045}
8.	MligTC455_23450	3559	74.14	Mlig455_053284, Mlig455_053425	Neo: Neoblast Age: -	GSPT1	0.954	-	-	-	0.954	-	-	Mlig455_053284 {REF} {Length: 3030} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=142.6]; Elongation factor Tu C-terminal domain [PF03143.19, score=72.5]; Elongation factor Tu domain 2 [PF03144.27, score=37.0]; Ataxin-2 C-terminal region [PF07145.17, score=24.4]} {Human: ENSG00000103342, GSPT1, G1 to S phase transition 1, [RH, Score=637, Expect=0.0]; ENSG00000189369, GSPT2, G1 to S phase transition 2, [RH, Score=632, Expect=0.0]} {Mouse: ENSMUSG00000062203, Gspt1, G1 to S phase transition 1, [RH, Score=639, Expect=0.0]; ENSMUSG00000071723, Gspt2, G1 to S phase transition 2, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0020443, eRF3, eukaryotic translation release factor 3, [RH, Score=627, Expect=0.0]} {Celegans: WBGene00010405, erfa-3, Eukaryotic Release FActor homolog, [RH, Score=555, Expect=0.0]} {Smed: dd_Smed_v6_1469_0_1, dd_Smed_v6_1469_0_1, [RH, Score=518, Expect=3e-180]} {RNA1509_2289} {RNA1310_5788, RNA1509_2289} {RNA1509_2289, RNA815_1880.1} Mlig455_053425 {REF} {Length: 3016} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=142.6]; Elongation factor Tu C-terminal domain [PF03143.19, score=72.5]; Elongation factor Tu domain 2 [PF03144.27, score=37.0]; Ataxin-2 C-terminal region [PF07145.17, score=24.4]} {Human: ENSG00000103342, GSPT1, G1 to S phase transition 1, [RH, Score=637, Expect=0.0]; ENSG00000189369, GSPT2, G1 to S phase transition 2, [RH, Score=632, Expect=0.0]} {Mouse: ENSMUSG00000062203, Gspt1, G1 to S phase transition 1, [RH, Score=639, Expect=0.0]; ENSMUSG00000071723, Gspt2, G1 to S phase transition 2, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0020443, eRF3, eukaryotic translation release factor 3, [RH, Score=627, Expect=0.0]} {Celegans: WBGene00010405, erfa-3, Eukaryotic Release FActor homolog, [RH, Score=555, Expect=0.0]} {Smed: dd_Smed_v6_1469_0_1, dd_Smed_v6_1469_0_1, [RH, Score=519, Expect=2e-180]} {RNA1509_2289, RNA1509_8337} {RNA1310_5788, RNA1509_8337} {RNA1509_8337, RNA815_1880.1}
9.	MligTC455_30135	2662	55.45	Mlig455_026996	Neo: - Age: Up-Up-Down	CLUH	0.953	-	-	-	0.953	-	-	Mlig455_026996 {REF} {Length: 6297} {TRANSSPLICED} {Pfam: Clustered mitochondria [PF13236.8, score=234.1]; Translation initiation factor eIF3 subunit 135 [PF12807.9, score=115.2]; Tetratricopeptide repeat [PF13424.8, score=71.1]; Mitochondrial function, CLU-N-term [PF15044.8, score=45.4]; Tetratricopeptide repeat [PF13374.8, score=36.9]} {Human: ENSG00000132361, CLUH, clustered mitochondria homolog, [RH, Score=557, Expect=2e-175]} {Mouse: ENSMUSG00000020741, Cluh, clustered mitochondria (cluA/CLU1) homolog, [RH, Score=560, Expect=7e-176]} {Dmel: FBgn0034087, clu, clueless, [RH, Score=553, Expect=2e-172]} {Celegans: WBGene00000550, clu-1, Clustered mitochondria protein homolog, [RH, Score=595, Expect=0.0]} {Smed: dd_Smed_v6_1597_0_1, dd_Smed_v6_1597_0_1, [RH, Score=552, Expect=9e-174]} {RNA1509_1206, RNA1509_32690, RNA1509_7296} {RNA1310_185.1, RNA1509_1206, RNA1509_32690, RNA1509_7296} {RNA1509_1206, RNA1509_32690, RNA1509_7296, RNA815_370}
10.	MligTC455_15851	848	17.66	Mlig455_003673, Mlig455_003717	Neo: - Age: -	BRF1	0.951	-	-	-	-	0.951	-	Mlig455_003673 {REF} {Length: 2876} {TRANSSPLICED} {Pfam: Transcription factor TFIIB repeat [PF00382.21, score=158.9]; Brf1-like TBP-binding domain [PF07741.15, score=57.6]; TFIIB zinc-binding [PF08271.14, score=40.5]; Cyclin, N-terminal domain [PF00134.25, score=23.2]} {Human: ENSG00000185024, BRF1, BRF1, RNA polymerase III transcription initiation factor subunit, [RH, Score=357, Expect=3e-112]} {Mouse: ENSMUSG00000011158, Brf1, BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit, [RH, Score=358, Expect=1e-112]} {Dmel: FBgn0038499, Brf, [RH, Score=331, Expect=1e-102]} {Celegans: WBGene00000271, brf-1, BRF (Transcription factor) homolog, [RH, Score=326, Expect=4e-100]} {Smed: dd_Smed_v6_1437_0_1, dd_Smed_v6_1437_0_1, [RH, Score=230, Expect=2e-66]} {RNA1509_17011} {RNA1310_6240.1} {RNA815_10656} Mlig455_003717 {REF} {Length: 2875} {TRANSSPLICED} {Pfam: Transcription factor TFIIB repeat [PF00382.21, score=158.9]; Brf1-like TBP-binding domain [PF07741.15, score=57.6]; TFIIB zinc-binding [PF08271.14, score=40.5]; Cyclin, N-terminal domain [PF00134.25, score=23.2]} {Human: ENSG00000185024, BRF1, BRF1, RNA polymerase III transcription initiation factor subunit, [RH, Score=357, Expect=3e-112]} {Mouse: ENSMUSG00000011158, Brf1, BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit, [RH, Score=358, Expect=1e-112]} {Dmel: FBgn0038499, Brf, [RH, Score=331, Expect=9e-103]} {Celegans: WBGene00000271, brf-1, BRF (Transcription factor) homolog, [RH, Score=326, Expect=6e-100]} {Smed: dd_Smed_v6_1437_0_1, dd_Smed_v6_1437_0_1, [RH, Score=229, Expect=3e-66]} {RNA1509_17011} {RNA1310_6240.1, RNA1509_17011} {RNA1509_17011, RNA815_10656}
11.	MligTC455_20218	397	8.26	Mlig455_035684	Neo: - Age: -	SMAP1	0.95	-	-	-	-	0.950	-	Mlig455_035684 {REF} {Length: 3404} {TRANSSPLICED} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=134.1]} {Human: ENSG00000112305, SMAP1, small ArfGAP 1, [RH, Score=178, Expect=5e-50]; ENSG00000084070, SMAP2, small ArfGAP2, [RH, Score=178, Expect=5e-50]} {Mouse: ENSMUSG00000032870, Smap2, small ArfGAP 2, [RH, Score=178, Expect=3e-50]; ENSMUSG00000026155, Smap1, small ArfGAP 1, [RH, Score=176, Expect=2e-49]} {Dmel: FBgn0033349, CG8243, [RH, Score=218, Expect=8e-65]} {Celegans: WBGene00012359, W09D10.1, [RH, Score=196, Expect=1e-56]} {Smed: dd_Smed_v6_2542_0_1, dd_Smed_v6_2542_0_1, [RH, Score=226, Expect=3e-69]} {RNA1509_10562, RNA1509_43139, RNA1509_49488} {RNA1310_2172.1, RNA1509_10562, RNA1509_43139, RNA1509_49488} {RNA1509_10562, RNA1509_43139, RNA1509_49488, RNA815_11714.1}
12.	MligTC455_45129	590	12.29	Mlig455_017244	Neo: - Age: - Regeneration-upregulated R6: 2.052 Regeneration-enriched R6: 2.052	NKRF	0.95	-	-	-	0.950	-	-	Mlig455_017244 {REF} {Length: 8558} {TRANSSPLICED} {Human: ENSG00000186416, NKRF, NFKB repressing factor, [Score=63.9, Expect=1e-09]} {Mouse: ENSMUSG00000044149, Nkrf, NF-kappaB repressing factor, [Score=68.2, Expect=4e-11]} {Smed: dd_Smed_v6_6505_0_1, dd_Smed_v6_6505_0_1, [RH, Score=136, Expect=4e-33]} {RNA1509_5026} {RNA1310_1815, RNA1509_5026} {RNA1509_5026, RNA815_1041.1}

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