M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25255

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25255 728 15.16 Mlig455_049890

Neo: -

Age: -

 Mlig455_049890 {REF} {Length: 1764} {TRANSSPLICED} {RNA1509_17288} {RNA1310_14898, RNA1509_17288} {RNA1509_17288, RNA815_12896}

Cumulative graph for MligTC455_25255

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.083 4.204 0.93030 1.00000
RegionR2 -0.187 4.204 0.66826 0.99717
RegionR3 -0.25 4.204 0.50136 0.99505
RegionR4 0.057 4.204 0.88555 1.00000
RegionR5 0.425 4.204 0.18989 0.47326
RegionR6 0.111 4.204 0.76008 1.00000
RegionR7 0.23 4.204 0.61933 1.00000
RegionR8 -0.303 4.204 0.64684 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.432 4.204 0.32268 1.00000
RegenerationR2 -0.268 4.204 0.47416 0.86004
RegenerationR3 -0.31 4.204 0.44688 0.83056
RegenerationR4 -0.642 4.204 0.10167 0.49354
RegenerationR5 0.065 4.204 0.85784 1.00000
RegenerationR6 -0.369 4.204 0.36161 0.70610
RegenerationBL -0.866 4.204 0.09795 0.36752
RegenerationTP -0.016 4.204 0.97735 1.00000


Genes with expression patterns similar to MligTC455_25255

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25255 728 15.16 Mlig455_049890

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_049890 {REF} {Length: 1764} {TRANSSPLICED} {RNA1509_17288} {RNA1310_14898, RNA1509_17288} {RNA1509_17288, RNA815_12896}
2. MligTC455_20927 128 2.66 Mlig455_052078

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_052078 {REF} {Length: 666} {NoTransDecoderORF} {RNA1310_56856} {RNA815_15280}
3. MligTC455_47729 324 6.75 Mlig455_046078

Neo: -

Age: -

 DHX37 0.967 - - - - - 0.967 Mlig455_046078 {REF} {Length: 3257} {TRANSSPLICED} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=74.2]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=49.6]; Helicase conserved C-terminal domain [PF00271.33, score=44.3]; DEAD/DEAH box helicase [PF00270.31, score=40.6]; AAA domain [PF13604.8, score=21.5]; AAA domain [PF13245.8, score=20.0]} {Human: ENSG00000150990, DHX37, DEAH-box helicase 37, [RH, Score=615, Expect=0.0]} {Mouse: ENSMUSG00000029480, Dhx37, DEAH (Asp-Glu-Ala-His) box polypeptide 37, [RH, Score=635, Expect=0.0]} {Dmel: FBgn0001330, kz, kurz, [RH, Score=649, Expect=0.0]} {Celegans: WBGene00015525, rha-2, Putative ATP-dependent RNA helicase rha-2, [RH, Score=556, Expect=3e-180]} {Smed: dd_Smed_v6_10340_0_1, dd_Smed_v6_10340_0_1, [RH, Score=584, Expect=0.0]} {RNA1509_10043} {RNA1310_4392} {RNA815_1308.1}
4. MligTC455_13981 74 1.55 Mlig455_004536

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_004536 {REF} {Length: 1975} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=32.3]} {Celegans: WBGene00011156, R09B3.3, [Score=47.4, Expect=4e-07]} {RNA1509_40007} {RNA1310_25577} {RNA815_11617}
5. MligTC455_35001 1233 25.68 Mlig455_049852, Mlig455_063818, Mlig455_069989

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=-0.416

 NOTCH1, SVEP1 0.958 - - - - - 0.958

Mlig455_049852 {REF} {Length: 1497} {Pfam: EGF-like domain [PF00008.29, score=23.5]; EGF-like domain [PF07974.15, score=19.5]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=53.9, Expect=1e-07]; ENSG00000074181, NOTCH3, notch 3, [Score=53.1, Expect=2e-07]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=56.6, Expect=8e-09]} {RNA1509_48097} {RNA1310_28757} {RNA815_6559}

Mlig455_063818 {REF} {Length: 1417} {Pfam: EGF-like domain [PF00008.29, score=23.6]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=52.4, Expect=6e-07]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=48.9, Expect=5e-06]} {RNA1509_48097} {RNA1310_28757} {RNA815_6559}

Mlig455_069989 {REF} {Length: 2965} {Pfam: EGF-like domain [PF00008.29, score=24.4]; EGF-like domain [PF07974.15, score=21.5]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=54.3, Expect=1e-07]} {Mouse: ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=56.2, Expect=2e-08]} {Celegans: WBGene00013486, egas-1, EGF plus ASC domain ion channel, [Score=46.2, Expect=1e-05]} {RNA1509_48097} {RNA1310_15482} {RNA815_16285}
6. MligTC455_39567 115 2.39 Mlig455_022680

Neo: -

Age: -

 PRC1 0.951 - - - - 0.951 - Mlig455_022680 {REF} {Length: 2766} {Pfam: Microtubule associated protein (MAP65/ASE1 family) [PF03999.14, score=172.2]} {Human: ENSG00000198901, PRC1, protein regulator of cytokinesis 1, [Score=115, Expect=1e-26]} {Mouse: ENSMUSG00000038943, Prc1, protein regulator of cytokinesis 1, [Score=111, Expect=2e-25]} {Dmel: FBgn0030242, sofe, sister of feo, [Score=84.7, Expect=6e-17]} {Smed: dd_Smed_v6_5754_0_1, dd_Smed_v6_5754_0_1, [Score=270, Expect=5e-84]} {RNA1509_15535, RNA1509_32312} {RNA1310_5073.1, RNA1509_32312} {RNA1509_32312, RNA815_1076.1}
7. MligTC455_38977 27 0.57 Mlig455_032434

Neo: -

Age: logFC(26M/2M)=-0.288

 MYO3A 0.95 - - - - 0.950 - Mlig455_032434 {REF} {Length: 5601} {TRANSSPLICED} {Pfam: Myosin head (motor domain) [PF00063.23, score=600.1]; Protein kinase domain [PF00069.27, score=169.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=139.4]; IQ calmodulin-binding motif [PF00612.29, score=21.2]; ABC1 atypical kinase-like domain [PF03109.18, score=18.1]} {Human: ENSG00000095777, MYO3A, myosin IIIA, [RH, Score=864, Expect=0.0]; ENSG00000071909, MYO3B, myosin IIIB, [RH, Score=852, Expect=0.0]} {Mouse: ENSMUSG00000025716, Myo3a, myosin IIIA, [RH, Score=854, Expect=0.0]; ENSMUSG00000042064, Myo3b, myosin IIIB, [RH, Score=844, Expect=0.0]} {Dmel: FBgn0002938, ninaC, neither inactivation nor afterpotential C, [RH, Score=502, Expect=9e-153]} {Celegans: WBGene00002039, hum-6, Unconventional myosin heavy chain 6, [Score=465, Expect=5e-137]} {Smed: dd_Smed_v6_5823_0_1, dd_Smed_v6_5823_0_1, [Score=432, Expect=1e-125]} {RNA1509_12030, RNA1509_35239} {RNA1310_1045, RNA1509_12030, RNA1509_35239} {RNA1509_12030, RNA1509_35239, RNA815_499.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA