TomoSeq data search

Data search

Results for MligTC455_25321

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25321

318

6.62

Mlig455_064863

Neo: -

Age: -

SOCS7

Mlig455_064863 {REF} {Length: 4577} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=47.9]; SOCS box [PF07525.18, score=34.3]} {Human: ENSG00000274229, SOCS7, suppressor of cytokine signaling 7, [RH, Score=180, Expect=4e-48]; ENSG00000274211, SOCS7, suppressor of cytokine signaling 7, [RH, Score=180, Expect=4e-48]} {Mouse: ENSMUSG00000038485, Socs7, suppressor of cytokine signaling 7, [Score=179, Expect=8e-48]} {Dmel: FBgn0030869, Socs16D, Suppressor of Cytokine Signaling at 16D, [RH, Score=160, Expect=2e-40]} {Celegans: WBGene00009556, F39B2.5, [RH, Score=67.8, Expect=9e-13]} {Smed: dd_Smed_v6_489_0_3, dd_Smed_v6_489_0_3, [RH, Score=232, Expect=3e-64]} {RNA1509_15003, RNA1509_35397} {RNA1310_19350, RNA1509_35397} {RNA1509_35397, RNA815_16941.1}

Cumulative graph for MligTC455_25321

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.651	3.163	0.54943	1.00000
RegionR2	0.765	3.163	0.17064	0.51657
RegionR3	0.506	3.163	0.16595	0.68821
RegionR4	-0.863	3.163	0.10587	0.31970
RegionR5	-0.093	3.163	0.77201	1.00000
RegionR6	-0.425	3.163	0.32202	0.91126
RegionR7	-0.301	3.163	0.66292	1.00000
RegionR8	-0.24	3.163	0.78440	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.377	3.163	0.28890	0.98718
RegenerationR2	0.678	3.163	0.11654	0.53141
RegenerationR3	-0.319	3.163	0.52088	0.86709
RegenerationR4	0.856	3.163	0.08471	0.45999
RegenerationR5	0.27	3.163	0.48749	0.85103
RegenerationR6	1.533	3.163	0.00232	0.05455
RegenerationBL	1.4	3.163	0.05575	0.27345
RegenerationTP	0.839	3.163	0.27922	0.72669

Genes with expression patterns similar to MligTC455_25321

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25321	318	6.62	Mlig455_064863	Neo: - Age: -	SOCS7	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_064863 {REF} {Length: 4577} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=47.9]; SOCS box [PF07525.18, score=34.3]} {Human: ENSG00000274229, SOCS7, suppressor of cytokine signaling 7, [RH, Score=180, Expect=4e-48]; ENSG00000274211, SOCS7, suppressor of cytokine signaling 7, [RH, Score=180, Expect=4e-48]} {Mouse: ENSMUSG00000038485, Socs7, suppressor of cytokine signaling 7, [Score=179, Expect=8e-48]} {Dmel: FBgn0030869, Socs16D, Suppressor of Cytokine Signaling at 16D, [RH, Score=160, Expect=2e-40]} {Celegans: WBGene00009556, F39B2.5, [RH, Score=67.8, Expect=9e-13]} {Smed: dd_Smed_v6_489_0_3, dd_Smed_v6_489_0_3, [RH, Score=232, Expect=3e-64]} {RNA1509_15003, RNA1509_35397} {RNA1310_19350, RNA1509_35397} {RNA1509_35397, RNA815_16941.1}
2.	MligTC455_50994	215	4.47	Mlig455_005156	Neo: Int S/G2/M Age: -	PUF60	1.726	-	-	-	0.952	-	0.774	Mlig455_005156 {REF} {Length: 2727} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=93.7]; RNA recognition motif [PF16367.7, score=29.7]} {Human: ENSG00000274081, PUF60, poly(U) binding splicing factor 60, [Score=226, Expect=4e-71]; ENSG00000179950, PUF60, poly(U) binding splicing factor 60, [Score=226, Expect=3e-71]} {Mouse: ENSMUSG00000002524, Puf60, poly-U binding splicing factor 60, [Score=226, Expect=1e-68]} {Dmel: FBgn0028577, hfp, half pint, [Score=221, Expect=2e-66]} {Celegans: WBGene00004389, rnp-6, RNP (RRM RNA binding domain) containing, [Score=181, Expect=3e-54]} {Smed: dd_Smed_v6_3853_0_3, dd_Smed_v6_3853_0_3, [Score=192, Expect=5e-57]} {RNA1509_19490} {RNA1310_20850, RNA1509_19490} {RNA1509_19490, RNA815_13982}
3.	MligTC455_07033	517	10.77	Mlig455_051183	Neo: - Age: -	DCUN1D3	1.72	-	-	-	0.956	-	0.764	Mlig455_051183 {REF} {Length: 2223} {TRANSSPLICED} {Pfam: Cullin binding [PF03556.17, score=102.2]} {Human: ENSG00000188215, DCUN1D3, defective in cullin neddylation 1 domain containing 3, [RH, Score=156, Expect=1e-45]} {Mouse: ENSMUSG00000048787, Dcun1d3, DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae), [RH, Score=157, Expect=6e-46]} {Dmel: FBgn0033784, SCCRO3, Squamous cell carcinoma-related oncogene 3, [RH, Score=149, Expect=7e-43]} {Celegans: WBGene00010428, dcn-1, Defective in cullin neddylation protein 1, [Score=90.9, Expect=1e-21]} {Smed: dd_Smed_v6_3227_0_1, dd_Smed_v6_3227_0_1, [Score=90.1, Expect=2e-21]} {RNA1509_47536} {RNA1310_18793.1, RNA1509_47536} {RNA1509_47536, RNA815_23221}
4.	MligTC455_32930	826	17.21	Mlig455_018043	Neo: Int S/G2/M Age: -	SMPD4	1.686	-	-	0.732	0.954	-	-	Mlig455_018043 {REF} {Length: 2920} {TRANSSPLICED} {Pfam: Mitochondrial-associated sphingomyelin phosphodiesterase [PF14724.8, score=169.3]} {Human: ENSG00000136699, SMPD4, sphingomyelin phosphodiesterase 4, [RH, Score=137, Expect=9e-33]} {Mouse: ENSMUSG00000005899, Smpd4, sphingomyelin phosphodiesterase 4, [RH, Score=140, Expect=1e-33]} {Dmel: FBgn0037958, CG6962, [RH, Score=75.5, Expect=1e-13]} {Smed: dd_Smed_v6_5903_0_1, dd_Smed_v6_5903_0_1, [RH, Score=180, Expect=6e-47]} {RNA1509_13922, RNA1509_41974} {RNA1310_6397.1, RNA1509_13922, RNA1509_41974} {RNA1509_13922, RNA1509_41974, RNA815_9860}
5.	MligTC455_41640	264	5.51	Mlig455_018266, Mlig455_018273	Neo: - Age: Down-Up-Up	ZC3H4	1.674	-	-	0.951	0.723	-	-	Mlig455_018266 {REF} {Length: 3374} {TRANSSPLICED} {Pfam: Zinc finger domain [PF18345.3, score=48.5]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=41.4]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=33.2]; CCCH-type zinc finger [PF18044.3, score=25.4]; Zinc-finger containing family [PF15663.7, score=21.2]} {Human: ENSG00000130749, ZC3H4, zinc finger CCCH-type containing 4, [Score=107, Expect=2e-23]; ENSG00000188177, ZC3H6, zinc finger CCCH-type containing 6, [Score=103, Expect=3e-22]} {Mouse: ENSMUSG00000059273, Zc3h4, zinc finger CCCH-type containing 4, [Score=107, Expect=1e-23]; ENSMUSG00000042851, Zc3h6, zinc finger CCCH type containing 6, [Score=106, Expect=3e-23]} {Dmel: FBgn0003575, su(sable), suppressor of sable, [RH, Score=77.4, Expect=3e-14]} {Smed: dd_Smed_v6_11872_0_1, dd_Smed_v6_11872_0_1, [RH, Score=88.6, Expect=4e-18]} {RNA1509_23922} {RNA1310_22798.1, RNA1509_23922} {RNA1509_23922, RNA815_13579} Mlig455_018273 {REF} {Length: 2728} {TRANSSPLICED} {Pfam: Zinc finger domain [PF18345.3, score=48.5]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=41.4]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=33.2]; CCCH-type zinc finger [PF18044.3, score=25.4]; Zinc-finger containing family [PF15663.7, score=21.2]} {Human: ENSG00000130749, ZC3H4, zinc finger CCCH-type containing 4, [Score=107, Expect=2e-23]; ENSG00000188177, ZC3H6, zinc finger CCCH-type containing 6, [Score=103, Expect=3e-22]} {Mouse: ENSMUSG00000059273, Zc3h4, zinc finger CCCH-type containing 4, [Score=107, Expect=1e-23]; ENSMUSG00000042851, Zc3h6, zinc finger CCCH type containing 6, [Score=106, Expect=3e-23]} {Dmel: FBgn0003575, su(sable), suppressor of sable, [RH, Score=77.4, Expect=3e-14]} {Smed: dd_Smed_v6_11872_0_1, dd_Smed_v6_11872_0_1, [RH, Score=88.6, Expect=4e-18]} {RNA1509_23922} {RNA1310_22798.1} {RNA815_13579}
6.	MligTC455_27932	296	6.16	Mlig455_062802	Neo: - Age: Up-Up-Up, logFC(26M/2M)=1.661	TTN	0.957	-	-	-	0.957	-	-	Mlig455_062802 {REF} {Length: 32843} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=542.7]; Fibronectin type III domain [PF00041.23, score=498.9]; Immunoglobulin domain [PF13927.8, score=288.7]; Immunoglobulin domain [PF13895.8, score=119.0]; Immunoglobulin domain [PF00047.27, score=110.3]; Immunoglobulin V-set domain [PF07686.19, score=82.4]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=60.2]; Tissue factor [PF01108.19, score=56.9]; Penicillin-Binding Protein C-terminus Family [PF06832.14, score=48.3]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=36.4]; Complex I intermediate-associated protein 30 (CIA30) [PF08547.14, score=25.2]; Type 2 DNA topoisomerase 6 subunit B C-terminal domain [PF18000.3, score=24.7]; Heavy-metal-associated domain [PF00403.28, score=23.0]; Exo-beta-D-glucosaminidase Ig-fold domain [PF18368.3, score=19.4]} {Human: ENSG00000155657, TTN, titin, [Score=456, Expect=2e-127]} {Mouse: ENSMUSG00000051747, Ttn, titin, [Score=513, Expect=9e-145]} {Dmel: FBgn0005666, bt, bent, [Score=419, Expect=1e-116]} {Celegans: WBGene00006759, unc-22, Twitchin, [Score=325, Expect=2e-88]} {Smed: dd_Smed_v6_2438_0_1, dd_Smed_v6_2438_0_1, [Score=598, Expect=1e-171]} {RNA1509_16845} {RNA1310_1.1} {RNA815_0}
7.	MligTC455_29402	182	3.79	Mlig455_063253	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.319	PSD3	0.956	0.956	-	-	-	-	-	Mlig455_063253 {REF} {Length: 5600} {Pfam: Sec7 domain [PF01369.22, score=124.2]; Pleckstrin homology domain [PF15410.8, score=93.2]; PH domain [PF00169.31, score=40.2]} {Human: ENSG00000156011, PSD3, pleckstrin and Sec7 domain containing 3, [RH, Score=266, Expect=4e-77]} {Mouse: ENSMUSG00000030465, Psd3, pleckstrin and Sec7 domain containing 3, [RH, Score=263, Expect=4e-80]} {Dmel: FBgn0051158, Efa6, Exchange factor for Arf 6, [RH, Score=326, Expect=6e-97]} {Celegans: WBGene00013223, efa-6, Exchange factor for Arf-6, [Score=234, Expect=3e-68]} {Smed: dd_Smed_v6_9018_0_1, dd_Smed_v6_9018_0_1, [RH, Score=231, Expect=4e-65]} {RNA1509_37014, RNA1509_42489} {RNA1310_9417, RNA1509_37014, RNA1509_42489} {RNA1509_37014, RNA1509_42489, RNA815_7053}
8.	MligTC455_53875	489	10.19	Mlig455_012108	Neo: - Age: Down-Up-Up Region-enriched R5: 1.473/0.00171	DTYMK	0.953	0.953	-	-	-	-	-	Mlig455_012108 {REF} {Length: 1358} {TRANSSPLICED} {Pfam: Thymidylate kinase [PF02223.19, score=137.6]; Polyphosphate kinase 2 (PPK2) [PF03976.16, score=19.4]} {Human: ENSG00000168393, DTYMK, deoxythymidylate kinase, [RH, Score=194, Expect=4e-62]} {Mouse: ENSMUSG00000026281, Dtymk, deoxythymidylate kinase, [RH, Score=185, Expect=9e-59]} {Dmel: FBgn0034299, CG5757, [RH, Score=158, Expect=3e-48]} {Celegans: WBGene00011272, dtmk-1, Thymidylate kinase, [RH, Score=176, Expect=2e-55]} {Smed: dd_Smed_v6_3849_0_2, dd_Smed_v6_3849_0_2, [RH, Score=162, Expect=2e-50]} {RNA1509_24600} {RNA1310_40248} {RNA815_19284}

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