M. lignano Tomo-Seq
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Results for MligTC455_25380

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25380 6622 137.96 Mlig455_040805

Neo: -

Age: -

 ALDH6A1 Mlig455_040805 {REF} {Length: 2106} {Pfam: Aldehyde dehydrogenase family [PF00171.24, score=447.0]} {Human: ENSG00000119711, ALDH6A1, aldehyde dehydrogenase 6 family member A1, [RH, Score=746, Expect=0.0]} {Mouse: ENSMUSG00000021238, Aldh6a1, aldehyde dehydrogenase family 6, subfamily A1, [RH, Score=752, Expect=0.0]} {Dmel: FBgn0023537, CG17896, [RH, Score=724, Expect=0.0]} {Celegans: WBGene00000114, alh-8, Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial, [RH, Score=712, Expect=0.0]} {Smed: dd_Smed_v6_2050_0_1, dd_Smed_v6_2050_0_1, [RH, Score=796, Expect=0.0]} {RNA1509_15641, RNA1509_735} {RNA1310_13219, RNA1509_15641, RNA1509_735} {RNA1509_15641, RNA1509_735, RNA815_2776}

Cumulative graph for MligTC455_25380

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.169 7.189 0.67975 1.00000
RegionR2 -0.25 7.189 0.19577 0.55382
RegionR3 0.385 7.189 0.01121 0.16512
RegionR4 0.633 7.189 0.00036 0.00467
RegionR5 0.419 7.189 0.00339 0.02586
RegionR6 0.14 7.189 0.37919 0.95927
RegionR7 -0.898 7.189 0.00008 0.00493
RegionR8 -0.26 7.189 0.32422 0.95723

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.154 7.189 0.77384 1.00000
RegenerationR2 0.376 7.189 0.02406 0.25525
RegenerationR3 0.001 7.189 0.99467 1.00000
RegenerationR4 0.151 7.189 0.39640 0.81085
RegenerationR5 0.262 7.189 0.11882 0.51736
RegenerationR6 0.315 7.189 0.07771 0.34844
RegenerationBL 0.669 7.189 0.00067 0.01748
RegenerationTP 0.219 7.189 0.35885 0.79936


Genes with expression patterns similar to MligTC455_25380

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25380 6622 137.96 Mlig455_040805

Neo: -

Age: -

 ALDH6A1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_040805 {REF} {Length: 2106} {Pfam: Aldehyde dehydrogenase family [PF00171.24, score=447.0]} {Human: ENSG00000119711, ALDH6A1, aldehyde dehydrogenase 6 family member A1, [RH, Score=746, Expect=0.0]} {Mouse: ENSMUSG00000021238, Aldh6a1, aldehyde dehydrogenase family 6, subfamily A1, [RH, Score=752, Expect=0.0]} {Dmel: FBgn0023537, CG17896, [RH, Score=724, Expect=0.0]} {Celegans: WBGene00000114, alh-8, Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial, [RH, Score=712, Expect=0.0]} {Smed: dd_Smed_v6_2050_0_1, dd_Smed_v6_2050_0_1, [RH, Score=796, Expect=0.0]} {RNA1509_15641, RNA1509_735} {RNA1310_13219, RNA1509_15641, RNA1509_735} {RNA1509_15641, RNA1509_735, RNA815_2776}
2. MligTC455_25381 7073 147.35 Mlig455_040904

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.387

 ALDH6A1 5.82 0.908 0.995 0.978 0.986 0.984 0.969 Mlig455_040904 {REF} {Length: 1110} {Pfam: Aldehyde dehydrogenase family [PF00171.24, score=447.0]} {Human: ENSG00000119711, ALDH6A1, aldehyde dehydrogenase 6 family member A1, [RH, Score=746, Expect=0.0]} {Mouse: ENSMUSG00000021238, Aldh6a1, aldehyde dehydrogenase family 6, subfamily A1, [RH, Score=752, Expect=0.0]} {Dmel: FBgn0023537, CG17896, [RH, Score=724, Expect=0.0]} {Celegans: WBGene00000114, alh-8, Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial, [RH, Score=712, Expect=0.0]} {Smed: dd_Smed_v6_2050_0_1, dd_Smed_v6_2050_0_1, [RH, Score=796, Expect=0.0]} {RNA1509_15641} {RNA1310_13219} {RNA815_2776}
3. MligTC455_24059 869 18.1 Mlig455_065283, Mlig455_065309

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.571

 NDUFS1 2.589 0.791 - 0.828 0.970 - -

Mlig455_065283 {REF} {Length: 2516} {Pfam: Molybdopterin oxidoreductase [PF00384.24, score=208.0]; NADH-ubiquinone oxidoreductase subunit G, C-terminal [PF09326.13, score=56.1]} {Human: ENSG00000023228, NDUFS1, NADH:ubiquinone oxidoreductase core subunit S1, [Score=645, Expect=0.0]; ENSG00000283447, NDUFS1, NADH:ubiquinone oxidoreductase core subunit S1, [Score=645, Expect=0.0]} {Mouse: ENSMUSG00000025968, Ndufs1, NADH:ubiquinone oxidoreductase core subunit S1, [Score=635, Expect=0.0]} {Dmel: FBgn0017566, ND-75, NADH dehydrogenase (ubiquinone) 75 kDa subunit, [Score=558, Expect=0.0]} {Celegans: WBGene00021562, nuo-5, NADH Ubiquinone Oxidoreductase, [Score=514, Expect=2e-174]} {Smed: dd_Smed_v6_2402_0_1, dd_Smed_v6_2402_0_1, [Score=572, Expect=0.0]} {RNA1509_1870} {RNA1310_6597} {RNA815_1467.1}

Mlig455_065309 {REF} {Length: 1229} {Pfam: Molybdopterin oxidoreductase [PF00384.24, score=176.8]; NADH-ubiquinone oxidoreductase subunit G, C-terminal [PF09326.13, score=42.6]} {Human: ENSG00000283447, NDUFS1, NADH:ubiquinone oxidoreductase core subunit S1, [Score=357, Expect=1e-117]; ENSG00000023228, NDUFS1, NADH:ubiquinone oxidoreductase core subunit S1, [Score=357, Expect=1e-117]} {Mouse: ENSMUSG00000025968, Ndufs1, NADH:ubiquinone oxidoreductase core subunit S1, [Score=342, Expect=5e-111]} {Dmel: FBgn0017566, ND-75, NADH dehydrogenase (ubiquinone) 75 kDa subunit, [Score=301, Expect=2e-95]} {Celegans: WBGene00021562, nuo-5, NADH Ubiquinone Oxidoreductase, [Score=249, Expect=1e-75]} {Smed: dd_Smed_v6_2402_0_1, dd_Smed_v6_2402_0_1, [Score=300, Expect=5e-95]} {RNA1509_1870} {RNA1310_6597} {RNA815_1467.1}
4. MligTC455_44238 804 16.74 Mlig455_000138

Neo: -

Age: logFC(26M/2M)=-0.408

 DDX58 1.696 - - - 0.955 0.741 - Mlig455_000138 {REF} {Length: 3489} {TRANSSPLICED} {Pfam: Type III restriction enzyme, res subunit [PF04851.17, score=62.5]; Helicase conserved C-terminal domain [PF00271.33, score=56.4]; C-terminal domain of RIG-I [PF11648.10, score=53.0]; DEAD/DEAH box helicase [PF00270.31, score=51.4]; RIG-I receptor C-terminal domain [PF18119.3, score=28.9]; SWI2/SNF2 ATPase [PF18766.3, score=24.4]; Terminase large subunit, T4likevirus-type, N-terminal [PF03237.17, score=20.1]} {Human: ENSG00000107201, DDX58, DExD/H-box helicase 58, [RH, Score=309, Expect=1e-89]} {Mouse: ENSMUSG00000040296, Ddx58, DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, [RH, Score=293, Expect=5e-84]} {Dmel: FBgn0038889, Fancm, Fanconi anemia group M helicase, [Score=93.2, Expect=8e-19]} {Celegans: WBGene00001090, drh-1, Dicer Related Helicase; Dicer-related helicase, [Score=196, Expect=8e-52]} {Smed: dd_Smed_v6_3742_0_1, dd_Smed_v6_3742_0_1, [RH, Score=378, Expect=6e-113]} {RNA1509_32387} {RNA1310_3559.1, RNA1509_32387} {RNA1509_32387, RNA815_2443}
5. MligTC455_27946 579 12.05 Mlig455_042123

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_042123 {REF} {Length: 3738} {TRANSSPLICED} {RNA1509_21342} {RNA1310_3198.1} {RNA815_912}

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