M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25505

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25505 15472 322.33 Mlig455_061784

Neo: -

Age: logFC(26M/2M)=0.327

 RPS23 Mlig455_061784 {REF} {Length: 644} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=173.9]} {Human: ENSG00000186468, RPS23, ribosomal protein S23, [RH, Score=256, Expect=9e-89]} {Mouse: ENSMUSG00000049517, Rps23, ribosomal protein S23, [RH, Score=256, Expect=6e-89]} {Dmel: FBgn0033912, RpS23, Ribosomal protein S23, [RH, Score=257, Expect=1e-89]} {Celegans: WBGene00004492, rps-23, 40S ribosomal protein S23, [RH, Score=260, Expect=6e-91]} {Smed: dd_Smed_v6_290_0_1, dd_Smed_v6_290_0_1, [RH, Score=259, Expect=1e-90]} {RNA1509_6381} {RNA1310_55450.1, RNA1509_6381} {RNA1509_6381, RNA815_25860.1}

Cumulative graph for MligTC455_25505

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.095 8.422 0.00257 0.16146
RegionR2 -0.615 8.422 0.01997 0.15318
RegionR3 0.454 8.422 0.03808 0.33953
RegionR4 0.776 8.422 0.00148 0.01412
RegionR5 0.549 8.422 0.00983 0.05699
RegionR6 0.266 8.422 0.22981 0.81342
RegionR7 0.279 8.422 0.20391 0.81345
RegionR8 -0.613 8.422 0.01893 0.26775

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.276 8.422 0.54360 1.00000
RegenerationR2 -0.258 8.422 0.36222 0.79019
RegenerationR3 -0.598 8.422 0.03845 0.34531
RegenerationR4 -0.429 8.422 0.14604 0.57184
RegenerationR5 -0.573 8.422 0.04397 0.34376
RegenerationR6 -0.481 8.422 0.09634 0.38613
RegenerationBL -0.112 8.422 0.65539 0.99095
RegenerationTP -0.081 8.422 0.76728 1.00000


Genes with expression patterns similar to MligTC455_25505

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25505 15472 322.33 Mlig455_061784

Neo: -

Age: logFC(26M/2M)=0.327

 RPS23 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_061784 {REF} {Length: 644} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=173.9]} {Human: ENSG00000186468, RPS23, ribosomal protein S23, [RH, Score=256, Expect=9e-89]} {Mouse: ENSMUSG00000049517, Rps23, ribosomal protein S23, [RH, Score=256, Expect=6e-89]} {Dmel: FBgn0033912, RpS23, Ribosomal protein S23, [RH, Score=257, Expect=1e-89]} {Celegans: WBGene00004492, rps-23, 40S ribosomal protein S23, [RH, Score=260, Expect=6e-91]} {Smed: dd_Smed_v6_290_0_1, dd_Smed_v6_290_0_1, [RH, Score=259, Expect=1e-90]} {RNA1509_6381} {RNA1310_55450.1, RNA1509_6381} {RNA1509_6381, RNA815_25860.1}
2. MligTC455_25506 15471 322.3 Mlig455_061821

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=5.676

 RPS23 5.999 1.000 1.000 1.000 1.000 1.000 0.999 Mlig455_061821 {REF} {Length: 636} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=122.5]} {Human: ENSG00000186468, RPS23, ribosomal protein S23, [Score=197, Expect=2e-65]} {Mouse: ENSMUSG00000049517, Rps23, ribosomal protein S23, [Score=197, Expect=1e-65]} {Dmel: FBgn0033912, RpS23, Ribosomal protein S23, [Score=202, Expect=4e-68]} {Celegans: WBGene00004492, rps-23, 40S ribosomal protein S23, [Score=202, Expect=6e-68]} {Smed: dd_Smed_v6_290_0_1, dd_Smed_v6_290_0_1, [Score=205, Expect=3e-69]} {RNA1509_18777} {RNA1310_55450.1} {RNA815_25860.1}
3. MligTC455_25504 15932 331.92 Mlig455_010550

Neo: Int S/G2/M

Age: -

 RPS23 5.924 0.999 0.997 0.990 0.978 0.981 0.979 Mlig455_010550 {REF} {Length: 640} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=173.9]} {Human: ENSG00000186468, RPS23, ribosomal protein S23, [RH, Score=256, Expect=9e-89]} {Mouse: ENSMUSG00000049517, Rps23, ribosomal protein S23, [RH, Score=256, Expect=6e-89]} {Dmel: FBgn0033912, RpS23, Ribosomal protein S23, [RH, Score=257, Expect=1e-89]} {Celegans: WBGene00004492, rps-23, 40S ribosomal protein S23, [RH, Score=260, Expect=6e-91]} {Smed: dd_Smed_v6_290_0_1, dd_Smed_v6_290_0_1, [RH, Score=259, Expect=1e-90]} {RNA1509_18777, RNA1509_463} {RNA1310_55450.1, RNA1509_18777, RNA1509_463} {RNA1509_18777, RNA1509_463, RNA815_25860.1}
4. MligTC455_34323 22218 462.87 Mlig455_011241

Neo: Int S/G2/M

Age: -

 PLEC 1.691 - - 0.741 - - 0.950 Mlig455_011241 {REF} {Length: 668} {TRANSSPLICED} {Pfam: Plectin/S10 domain [PF03501.17, score=132.4]} {Human: ENSG00000178209, PLEC, plectin, [Score=135, Expect=8e-37]; ENSG00000124614, RPS10, ribosomal protein S10, [Score=134, Expect=4e-40]; ENSG00000270800, RPS10-NUDT3, RPS10-NUDT3 readthrough, [Score=133, Expect=2e-38]} {Mouse: ENSMUSG00000052146, Rps10, ribosomal protein S10, [RH, Score=132, Expect=3e-40]} {Dmel: FBgn0027494, RpS10a, Ribosomal protein S10a, [RH, Score=127, Expect=4e-38]} {Celegans: WBGene00004479, rps-10, Ribosomal Protein, Small subunit, [RH, Score=121, Expect=6e-36]} {Smed: dd_Smed_v6_117_0_1, dd_Smed_v6_117_0_1, [Score=132, Expect=2e-40]} {RNA1509_382} {RNA1310_53110} {RNA815_28448}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA