M. lignano Tomo-Seq
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Results for MligTC455_25524

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25524 7933 165.26 Mlig455_032179

Neo: -

Age: logFC(26M/2M)=-0.281

Region-enriched R4: 1.131/0.00000

Regeneration-upregulated BL: 1.521

Regeneration-enriched BL: 1.521

 ATP5F1B Mlig455_032179 {REF} {Length: 2075} {TRANSSPLICED} {Pfam: ATP synthase alpha/beta family, nucleotide-binding domain [PF00006.27, score=207.4]; ATP synthase alpha/beta family, beta-barrel domain [PF02874.25, score=79.7]} {Human: ENSG00000110955, ATP5F1B, ATP synthase F1 subunit beta, [RH, Score=858, Expect=0.0]} {Mouse: ENSMUSG00000025393, Atp5b, ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, [RH, Score=857, Expect=0.0]} {Dmel: FBgn0010217, ATPsynbeta, ATP synthase, beta subunit, [RH, Score=838, Expect=0.0]} {Celegans: WBGene00000229, atp-2, ATP synthase subunit beta, mitochondrial, [RH, Score=857, Expect=0.0]} {Smed: dd_Smed_v6_745_0_1, dd_Smed_v6_745_0_1, [RH, Score=882, Expect=0.0]} {RNA1509_13964, RNA1509_1480, RNA1509_19272} {RNA1310_12874.1, RNA1509_13964, RNA1509_19272} {RNA1509_13964, RNA1509_19272, RNA815_4496.1}

Cumulative graph for MligTC455_25524

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.013 7.469 0.97498 1.00000
RegionR2 -0.374 7.469 0.07780 0.34122
RegionR3 0.47 7.469 0.00493 0.09414
RegionR4 1.131 7.469 0.00000 0.00000
RegionR5 0.846 7.469 0.00000 0.00000
RegionR6 0.279 7.469 0.10557 0.59569
RegionR7 -0.562 7.469 0.01100 0.18246
RegionR8 -1.778 7.469 0.00000 0.00001

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.031 7.469 0.95058 1.00000
RegenerationR2 0.148 7.469 0.44442 0.84271
RegenerationR3 -0.223 7.469 0.26406 0.69892
RegenerationR4 0.026 7.469 0.90095 1.00000
RegenerationR5 0.055 7.469 0.77415 0.98015
RegenerationR6 0.657 7.469 0.00096 0.03351
RegenerationBL 1.521 7.469 0.00000 0.00000 Specific for BL: 1.521
RegenerationTP 0.57 7.469 0.03604 0.31729


Genes with expression patterns similar to MligTC455_25524

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25524 7933 165.26 Mlig455_032179

Neo: -

Age: logFC(26M/2M)=-0.281

Region-enriched R4: 1.131/0.00000

Regeneration-upregulated BL: 1.521

Regeneration-enriched BL: 1.521

 ATP5F1B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032179 {REF} {Length: 2075} {TRANSSPLICED} {Pfam: ATP synthase alpha/beta family, nucleotide-binding domain [PF00006.27, score=207.4]; ATP synthase alpha/beta family, beta-barrel domain [PF02874.25, score=79.7]} {Human: ENSG00000110955, ATP5F1B, ATP synthase F1 subunit beta, [RH, Score=858, Expect=0.0]} {Mouse: ENSMUSG00000025393, Atp5b, ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, [RH, Score=857, Expect=0.0]} {Dmel: FBgn0010217, ATPsynbeta, ATP synthase, beta subunit, [RH, Score=838, Expect=0.0]} {Celegans: WBGene00000229, atp-2, ATP synthase subunit beta, mitochondrial, [RH, Score=857, Expect=0.0]} {Smed: dd_Smed_v6_745_0_1, dd_Smed_v6_745_0_1, [RH, Score=882, Expect=0.0]} {RNA1509_13964, RNA1509_1480, RNA1509_19272} {RNA1310_12874.1, RNA1509_13964, RNA1509_19272} {RNA1509_13964, RNA1509_19272, RNA815_4496.1}
2. MligTC455_25525 15804 329.25 Mlig455_051198, Mlig455_062957

Neo: -

Age: logFC(26M/2M)=0.399

Regeneration-upregulated BL: 1.667

Regeneration-enriched BL: 1.667

 ATP5F1B 4.662 0.933 - 0.798 0.989 0.960 0.982

Mlig455_051198 {REF} {Length: 2066} {TRANSSPLICED} {Pfam: ATP synthase alpha/beta family, nucleotide-binding domain [PF00006.27, score=207.4]; ATP synthase alpha/beta family, beta-barrel domain [PF02874.25, score=79.7]} {Human: ENSG00000110955, ATP5F1B, ATP synthase F1 subunit beta, [RH, Score=858, Expect=0.0]} {Mouse: ENSMUSG00000025393, Atp5b, ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, [RH, Score=857, Expect=0.0]} {Dmel: FBgn0010217, ATPsynbeta, ATP synthase, beta subunit, [RH, Score=838, Expect=0.0]} {Celegans: WBGene00000229, atp-2, ATP synthase subunit beta, mitochondrial, [RH, Score=857, Expect=0.0]} {Smed: dd_Smed_v6_745_0_1, dd_Smed_v6_745_0_1, [RH, Score=882, Expect=0.0]} {RNA1509_1480, RNA1509_29320, RNA1509_48632} {RNA1310_12874.1, RNA1509_1480, RNA1509_29320, RNA1509_48632} {RNA1509_1480, RNA1509_29320, RNA1509_48632, RNA815_4496.1}

Mlig455_062957 {REF} {Length: 2075} {TRANSSPLICED} {Pfam: ATP synthase alpha/beta family, nucleotide-binding domain [PF00006.27, score=207.4]; ATP synthase alpha/beta family, beta-barrel domain [PF02874.25, score=79.7]} {Human: ENSG00000110955, ATP5F1B, ATP synthase F1 subunit beta, [RH, Score=858, Expect=0.0]} {Mouse: ENSMUSG00000025393, Atp5b, ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, [RH, Score=857, Expect=0.0]} {Dmel: FBgn0010217, ATPsynbeta, ATP synthase, beta subunit, [RH, Score=838, Expect=0.0]} {Celegans: WBGene00000229, atp-2, ATP synthase subunit beta, mitochondrial, [RH, Score=857, Expect=0.0]} {Smed: dd_Smed_v6_745_0_1, dd_Smed_v6_745_0_1, [RH, Score=882, Expect=0.0]} {RNA1509_1480, RNA1509_2121, RNA1509_39603} {RNA1310_12874.1, RNA1509_2121, RNA1509_39603} {RNA1509_2121, RNA1509_39603, RNA815_4496.1}
3. MligTC455_34353 1653 34.44 Mlig455_048508

Neo: Int S/G2/M

Age: Down-Up-Down

Regeneration-upregulated BL: 1.481

Regeneration-enriched BL: 1.481

 2.641 - 0.824 - - 0.850 0.967 Mlig455_048508 {REF} {Length: 442} {NoTransDecoderORF} {RNA1509_11449} {RNA1310_21979} {RNA815_9012}
4. MligTC455_11992 547 11.4 Mlig455_070918

Neo: Irradiation

Age: -

 2.509 - - - 0.809 0.952 0.748 Mlig455_070918 {REF} {Length: 2532} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=30.1]} {RNA1509_24959, RNA1509_52445} {RNA1310_2279.2, RNA1509_24959} {RNA1509_24959, RNA815_17518}
5. MligTC455_31155 831 17.31 Mlig455_041818

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R4: 2.479/0.00098
Region-enriched R5: 2.397/0.00003

 RANBP2 2.509 0.732 - - - 0.953 0.824 Mlig455_041818 {REF} {Length: 8642} {TRANSSPLICED} {Pfam: RanBP1 domain [PF00638.20, score=351.3]; Tetratricopeptide repeat [PF13432.8, score=21.3]} {Human: ENSG00000153201, RANBP2, RAN binding protein 2, [Score=165, Expect=1e-39]} {Mouse: ENSMUSG00000003226, Ranbp2, RAN binding protein 2, [Score=243, Expect=1e-63]} {Dmel: FBgn0039302, Nup358, Nucleoporin 358kD, [RH, Score=261, Expect=2e-69]} {Celegans: WBGene00003795, npp-9, Nuclear Pore complex Protein, [RH, Score=251, Expect=8e-69]} {Smed: dd_Smed_v6_2979_0_1, dd_Smed_v6_2979_0_1, [RH, Score=143, Expect=7e-37]} {RNA1509_5818} {RNA1310_199.1} {RNA815_7098}
6. MligTC455_50452 856 17.83 Mlig455_061011

Neo: -

Age: -

Region-enriched R4: 1.811/0.02245
Region-enriched R5: 1.589/0.02679

 GPD2 1.661 - - - 0.700 0.961 - Mlig455_061011 {REF} {Length: 2921} {TRANSSPLICED} {Pfam: FAD dependent oxidoreductase [PF01266.26, score=183.6]; C-terminal domain of alpha-glycerophosphate oxidase [PF16901.7, score=132.8]; EF-hand domain pair [PF13499.8, score=50.9]; FAD binding domain [PF00890.26, score=39.3]; EF hand [PF00036.34, score=35.9]; EF-hand domain [PF13405.8, score=32.7]; EF-hand domain pair [PF13833.8, score=28.8]; EF hand [PF13202.8, score=28.6]; FAD dependent oxidoreductase [PF12831.9, score=25.8]; FAD binding domain [PF01494.21, score=21.8]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=20.0]; Glucose inhibited division protein A [PF01134.24, score=19.8]} {Human: ENSG00000115159, GPD2, glycerol-3-phosphate dehydrogenase 2, [RH, Score=863, Expect=0.0]} {Mouse: ENSMUSG00000026827, Gpd2, glycerol phosphate dehydrogenase 2, mitochondrial, [RH, Score=847, Expect=0.0]} {Dmel: FBgn0022160, Gpo-1, Glycerophosphate oxidase-1, [RH, Score=822, Expect=0.0]} {Celegans: WBGene00012031, T25G3.4, Probable glycerol-3-phosphate dehydrogenase, mitochondrial, [RH, Score=776, Expect=0.0]} {Smed: dd_Smed_v6_4928_0_1, dd_Smed_v6_4928_0_1, [RH, Score=830, Expect=0.0]} {RNA1509_31434, RNA1509_3796} {RNA1310_6250.1, RNA1509_31434, RNA1509_3796} {RNA1509_31434, RNA1509_3796, RNA815_1850.1}

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