TomoSeq data search

Data search

Results for MligTC455_25896

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25896

2685

55.93

Mlig455_028813

Neo: -

Age: -

Regeneration-downregulated BL: -1.413

Regeneration-depleted BL: -1.413

SERINC3

Mlig455_028813 {REF} {Length: 2623} {TRANSSPLICED} {Pfam: Serine incorporator (Serinc) [PF03348.17, score=514.1]} {Human: ENSG00000132824, SERINC3, serine incorporator 3, [RH, Score=412, Expect=3e-140]} {Mouse: ENSMUSG00000019877, Serinc1, serine incorporator 1, [RH, Score=410, Expect=3e-140]} {Dmel: FBgn0028399, TMS1, [RH, Score=350, Expect=2e-116]} {Celegans: WBGene00021956, Y57E12AL.1, [RH, Score=374, Expect=8e-126]} {Smed: dd_Smed_v6_1130_0_1, dd_Smed_v6_1130_0_1, [RH, Score=515, Expect=0.0]} {RNA1509_48832, RNA1509_6329} {RNA1310_16171, RNA1509_48832, RNA1509_6329} {RNA1509_48832, RNA1509_6329, RNA815_6171}

Cumulative graph for MligTC455_25896

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.744	5.985	0.19986	0.83631
RegionR2	0.286	5.985	0.29745	0.68606
RegionR3	0.345	5.985	0.11368	0.58664
RegionR4	0.167	5.985	0.52830	0.85241
RegionR5	-0.718	5.985	0.00119	0.01171
RegionR6	0.077	5.985	0.72711	1.00000
RegionR7	0.01	5.985	0.97120	1.00000
RegionR8	0.576	5.985	0.04048	0.39422

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.402	5.985	0.68773	1.00000
RegenerationR2	-0.019	5.985	0.93824	1.00000
RegenerationR3	-0.356	5.985	0.19541	0.63076
RegenerationR4	-0.447	5.985	0.11547	0.51877
RegenerationR5	0.309	5.985	0.25842	0.68973
RegenerationR6	-0.356	5.985	0.21108	0.55427
RegenerationBL	-1.413	5.985	0.00007	0.00346	Specific for BL: -1.413
RegenerationTP	0.168	5.985	0.57424	0.94685

Genes with expression patterns similar to MligTC455_25896

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25896	2685	55.93	Mlig455_028813	Neo: - Age: - Regeneration-downregulated BL: -1.413 Regeneration-depleted BL: -1.413	SERINC3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_028813 {REF} {Length: 2623} {TRANSSPLICED} {Pfam: Serine incorporator (Serinc) [PF03348.17, score=514.1]} {Human: ENSG00000132824, SERINC3, serine incorporator 3, [RH, Score=412, Expect=3e-140]} {Mouse: ENSMUSG00000019877, Serinc1, serine incorporator 1, [RH, Score=410, Expect=3e-140]} {Dmel: FBgn0028399, TMS1, [RH, Score=350, Expect=2e-116]} {Celegans: WBGene00021956, Y57E12AL.1, [RH, Score=374, Expect=8e-126]} {Smed: dd_Smed_v6_1130_0_1, dd_Smed_v6_1130_0_1, [RH, Score=515, Expect=0.0]} {RNA1509_48832, RNA1509_6329} {RNA1310_16171, RNA1509_48832, RNA1509_6329} {RNA1509_48832, RNA1509_6329, RNA815_6171}
2.	MligTC455_30165	81	1.69	Mlig455_020913	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.356		2.478	0.789	-	0.738	-	-	0.951	Mlig455_020913 {REF} {Length: 4138} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=34.5]; Ankyrin repeat [PF00023.32, score=25.4]; Ankyrin repeat [PF13606.8, score=24.2]; Ankyrin repeats (many copies) [PF13857.8, score=20.4]} {RNA1509_14810} {RNA1310_3488.2} {RNA815_24511}
3.	MligTC455_49094	59	1.22	Mlig455_065396	Neo: - Age: -	RERGL	1.787	0.826	-	-	-	-	0.961	Mlig455_065396 {REF} {Length: 1449} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=61.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=25.4]} {Human: ENSG00000111404, RERGL, RERG like, [Score=80.5, Expect=7e-18]; ENSG00000134533, RERG, RAS like estrogen regulated growth inhibitor, [Score=80.1, Expect=7e-18]} {Mouse: ENSMUSG00000092164, Rergl, RERG/RAS-like, [Score=84.7, Expect=1e-19]} {Dmel: FBgn0035711, CG8519, [Score=69.3, Expect=4e-14]} {Celegans: WBGene00004309, rap-3, RAP homolog (Vertebrate Rap GTPase family), [Score=59.3, Expect=1e-10]} {Smed: dd_Smed_v6_7273_0_1, dd_Smed_v6_7273_0_1, [Score=80.1, Expect=3e-18]} {RNA1509_41924} {RNA1310_34154} {RNA815_43516}
4.	MligTC455_36963	39	0.81	Mlig455_050201	Neo: - Age: Up-Down-Down	AVPR1B	1.743	0.771	-	-	-	-	0.972	Mlig455_050201 {REF} {Length: 2792} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=152.5]; Olfactory receptor [PF13853.8, score=29.2]} {Human: ENSG00000198049, AVPR1B, arginine vasopressin receptor 1B, [Score=92.8, Expect=1e-19]} {Mouse: ENSMUSG00000049112, Oxtr, oxytocin receptor, [Score=94.0, Expect=3e-20]} {Dmel: FBgn0025595, AkhR, Adipokinetic hormone receptor, [Score=80.5, Expect=7e-16]} {Celegans: WBGene00006475, tyra-3, TYRAmine receptor, [Score=79.0, Expect=3e-15]} {Smed: dd_Smed_v6_45004_0_1, dd_Smed_v6_45004_0_1, [Score=69.7, Expect=8e-13]} {RNA1310_72444} {RNA815_35126}
5.	MligTC455_13917	50	1.05	Mlig455_006935, Mlig455_017950	Neo: - Age: -		1.694	0.742	-	-	-	-	0.952	Mlig455_006935 {REF} {Length: 1553} {RNA1310_24840} {RNA815_41829} Mlig455_017950 {REF} {Length: 1661} {RNA1310_24840} {RNA815_41829}
6.	MligTC455_17376	103	2.15	Mlig455_020346	Neo: - Age: -		1.669	-	-	-	0.718	-	0.951	Mlig455_020346 {REF} {Length: 1093} {NoTransDecoderORF} {RNA1310_106511}
7.	MligTC455_16375	99	2.05	Mlig455_030691	Neo: - Age: - Region-enriched R8: 3.721/0.03273	RAPGEF2	1.655	0.704	-	-	-	-	0.951	Mlig455_030691 {REF} {Length: 1157} {Pfam: RasGEF domain [PF00617.21, score=62.0]} {Human: ENSG00000109756, RAPGEF2, Rap guanine nucleotide exchange factor 2, [Score=78.2, Expect=2e-15]} {Mouse: ENSMUSG00000062232, Rapgef2, Rap guanine nucleotide exchange factor (GEF) 2, [Score=77.4, Expect=2e-15]} {Dmel: FBgn0085421, Epac, Exchange protein directly activated by cAMP, [Score=66.6, Expect=7e-12]} {Celegans: WBGene00004254, pxf-1, Rap guanine nucleotide exchange factor, [Score=69.3, Expect=8e-13]} {Smed: dd_Smed_v6_4950_0_2, dd_Smed_v6_4950_0_2, [Score=61.2, Expect=3e-10]} {RNA1310_33127.1} {RNA815_48107}
8.	MligTC455_03020	77	1.61	Mlig455_031009	Neo: - Age: -	PCDH7	0.961	-	-	-	-	-	0.961	Mlig455_031009 {REF} {Length: 4201} {Pfam: Cadherin domain [PF00028.19, score=251.4]} {Human: ENSG00000169851, PCDH7, protocadherin 7, [Score=236, Expect=2e-63]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=263, Expect=2e-72]} {Dmel: FBgn0284247, ds, dachsous, [Score=207, Expect=1e-53]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=172, Expect=3e-43]} {Smed: dd_Smed_v6_17019_0_1, dd_Smed_v6_17019_0_1, [Score=290, Expect=8e-83]} {RNA1509_5672} {RNA1310_47266} {RNA815_2173}
9.	MligTC455_56513	8	0.16	Mlig455_010760	Neo: - Age: -		0.961	-	-	-	-	-	0.961	Mlig455_010760 {REF} {Length: 154} {NoTransDecoderORF}
10.	MligTC455_18569	79	1.65	Mlig455_002173, Mlig455_002274, Mlig455_002318	Neo: - Age: - Region-enriched R4: 6.510/0.00058		0.959	-	-	-	-	-	0.959	Mlig455_002173 {REF} {Length: 1129} {NoTransDecoderORF} {RNA1509_52353} {RNA1310_130608} {RNA815_60304} Mlig455_002274 {REF} {Length: 1130} {NoTransDecoderORF} {RNA1509_52353} {RNA1310_130608} {RNA815_60304} Mlig455_002318 {REF} {Length: 1012} {NoTransDecoderORF} {RNA1509_52353} {RNA1310_130608} {RNA815_60304}
11.	MligTC455_26314	5157	107.45	Mlig455_030231	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.467	SQSTM1	0.952	-	-	-	0.952	-	-	Mlig455_030231 {REF} {Length: 2335} {Pfam: UBA domain [PF16577.7, score=51.0]; Zinc finger, ZZ type [PF00569.19, score=38.4]; PB1 domain [PF00564.26, score=22.7]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [Score=65.5, Expect=6e-11]; ENSG00000284099, AC008393.2, sequestosome 1, [Score=64.7, Expect=9e-11]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [Score=103, Expect=1e-23]} {Dmel: FBgn0037655, Kcmf1, Potassium channel modulatory factor 1, [Score=49.3, Expect=5e-06]} {Celegans: WBGene00011737, sqst-1, SeQueSTosome related, [Score=55.5, Expect=5e-08]} {RNA1509_10635, RNA1509_4756, RNA1509_5318, RNA1509_911} {RNA1310_32633, RNA1509_10635, RNA1509_4756, RNA1509_5318, RNA1509_911} {RNA1509_10635, RNA1509_4756, RNA1509_5318, RNA1509_911, RNA815_1033}
12.	MligTC455_26315	6236	129.91	Mlig455_068010	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.365	SQSTM1	0.952	-	-	-	0.952	-	-	Mlig455_068010 {REF} {Length: 5406} {Pfam: UBA domain [PF16577.7, score=51.0]; Zinc finger, ZZ type [PF00569.19, score=38.4]; PB1 domain [PF00564.26, score=22.7]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [Score=65.5, Expect=6e-11]; ENSG00000284099, AC008393.2, sequestosome 1, [Score=64.7, Expect=9e-11]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [RH, Score=102, Expect=1e-23]} {Dmel: FBgn0037655, Kcmf1, Potassium channel modulatory factor 1, [Score=49.3, Expect=5e-06]} {Celegans: WBGene00011737, sqst-1, SeQueSTosome related, [Score=55.5, Expect=5e-08]} {RNA1509_911} {RNA1310_32633} {RNA815_1033}
13.	MligTC455_17966	1490	31.04	Mlig455_026737	Neo: - Age: logFC(26M/2M)=-0.346 Region-specific R2: 3.759 Region-enriched R2: 2.729/0.00000 Region-enriched R6: 1.885/0.00048 Regeneration-downregulated R6: -2.271 Regeneration-depleted R6: -2.271		0.951	-	-	-	-	-	0.951	Mlig455_026737 {REF} {Length: 1222} {Pfam: YqbF, hypothetical protein domain [PF14553.8, score=36.3]; Zinc-finger of nitric oxide synthase-interacting protein [PF15906.7, score=26.5]; Protein of unknown function (DUF559) [PF04480.14, score=20.7]; REase_MTES_1575 [PF18741.3, score=20.0]} {RNA1509_18273} {RNA1310_34603.1} {RNA815_20381}
14.	MligTC455_40477	87	1.8	Mlig455_066098, Mlig455_068673	Neo: - Age: - Regeneration-downregulated R4: -4.243 Regeneration-depleted R4: -4.243	SSUH2	0.95	-	-	-	-	-	0.950	Mlig455_066098 {REF} {Length: 1581} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=108, Expect=1e-26]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=104, Expect=3e-25]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [Score=69.3, Expect=4e-13]} {RNA1310_23200} {RNA815_29266} Mlig455_068673 {REF} {Length: 1558} {Pfam: DnaJ central domain [PF00684.21, score=24.8]} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [RH, Score=216, Expect=8e-66]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=165, Expect=6e-47]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [RH, Score=140, Expect=2e-37]} {RNA1310_23200} {RNA815_29266}

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