M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_26221

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_26221 67 1.39 Mlig455_032780

Neo: Irradiation

Age: -

 BIRC3 Mlig455_032780 {REF} {Length: 3138} {TRANSSPLICED} {Pfam: Inhibitor of Apoptosis domain [PF00653.23, score=40.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=23.8]} {Human: ENSG00000023445, BIRC3, baculoviral IAP repeat containing 3, [Score=69.7, Expect=8e-12]; ENSG00000110330, BIRC2, baculoviral IAP repeat containing 2, [Score=68.9, Expect=1e-11]} {Mouse: ENSMUSG00000057367, Birc2, baculoviral IAP repeat-containing 2, [Score=65.1, Expect=1e-10]; ENSMUSG00000032000, Birc3, baculoviral IAP repeat-containing 3, [Score=62.8, Expect=4e-10]} {RNA1509_56370} {RNA1310_17686.1, RNA1509_56370} {RNA1509_56370, RNA815_17744}

Cumulative graph for MligTC455_26221

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.962 1.593 0.99987 1.00000
RegionR2 0.709 1.593 0.69804 1.00000
RegionR3 1.245 1.593 0.48154 0.98335
RegionR4 2.629 1.593 0.24600 0.54416
RegionR5 1.75 1.593 0.31846 0.65944
RegionR6 0.478 1.593 0.69010 1.00000
RegionR7 0.194 1.593 0.77648 1.00000
RegionR8 -4.044 1.593 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.083 1.593 1.00000 1.00000
RegenerationR2 0.367 1.593 0.84536 1.00000
RegenerationR3 -0.143 1.593 0.91382 1.00000
RegenerationR4 0.406 1.593 0.87686 1.00000
RegenerationR5 0.311 1.593 0.90861 1.00000
RegenerationR6 1.121 1.593 0.62844 0.88573
RegenerationBL 3.225 1.593 0.17691 0.50484
RegenerationTP -1.917 1.593 1.00000 1.00000


Genes with expression patterns similar to MligTC455_26221

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_26221 67 1.39 Mlig455_032780

Neo: Irradiation

Age: -

 BIRC3 5 - 1.000 1.000 1.000 1.000 1.000 Mlig455_032780 {REF} {Length: 3138} {TRANSSPLICED} {Pfam: Inhibitor of Apoptosis domain [PF00653.23, score=40.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=23.8]} {Human: ENSG00000023445, BIRC3, baculoviral IAP repeat containing 3, [Score=69.7, Expect=8e-12]; ENSG00000110330, BIRC2, baculoviral IAP repeat containing 2, [Score=68.9, Expect=1e-11]} {Mouse: ENSMUSG00000057367, Birc2, baculoviral IAP repeat-containing 2, [Score=65.1, Expect=1e-10]; ENSMUSG00000032000, Birc3, baculoviral IAP repeat-containing 3, [Score=62.8, Expect=4e-10]} {RNA1509_56370} {RNA1310_17686.1, RNA1509_56370} {RNA1509_56370, RNA815_17744}
2. MligTC455_12668 71 1.48 Mlig455_062981, Mlig455_062987

Neo: -

Age: -

 1.744 - - - 0.967 - 0.777

Mlig455_062981 {REF} {Length: 1508} {RNA1509_39161} {RNA1310_17318} {RNA815_13240}

Mlig455_062987 {REF} {Length: 1610} {RNA1509_39161} {RNA1310_17318} {RNA815_13240}
3. MligTC455_42703 177 3.7 Mlig455_060837

Neo: -

Age: -

 1.718 - - - 0.753 0.965 - Mlig455_060837 {REF} {Length: 512} {NoTransDecoderORF} {RNA1509_26392} {RNA1310_76061} {RNA815_1999}
4. MligTC455_05445 216 4.5 Mlig455_057834, Mlig455_057845

Neo: Irradiation

Age: -

Region-enriched R5: 4.010/0.00000

 0.966 - - - 0.966 - -

Mlig455_057834 {REF} {Length: 2777} {Pfam: Mab-21 protein [PF03281.16, score=28.6]} {RNA1509_21275} {RNA1310_27488} {RNA815_25797}

Mlig455_057845 {REF} {Length: 2779} {Pfam: Mab-21 protein [PF03281.16, score=28.7]} {RNA1509_21275} {RNA1310_27488} {RNA815_25797}
5. MligTC455_27774 19 0.4 Mlig455_018547

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_018547 {REF} {Length: 3030} {NoTransDecoderORF} {RNA1509_22897} {RNA1310_68660} {RNA815_23715.1}
6. MligTC455_49081 472 9.84 Mlig455_068529

Neo: -

Age: -

Region-enriched R5: 1.779/0.02721

 CANX 0.959 - - - - - 0.959 Mlig455_068529 {REF} {Length: 2120} {TRANSSPLICED} {Pfam: Calreticulin family [PF00262.20, score=463.2]} {Human: ENSG00000127022, CANX, calnexin, [Score=479, Expect=5e-163]; ENSG00000283777, CANX, calnexin, [Score=479, Expect=5e-163]} {Mouse: ENSMUSG00000020368, Canx, calnexin, [Score=468, Expect=1e-158]} {Dmel: FBgn0015622, Cnx99A, Calnexin 99A, [Score=402, Expect=4e-133]} {Celegans: WBGene00000567, cnx-1, Calnexin, [Score=391, Expect=1e-128]} {Smed: dd_Smed_v6_632_0_1, dd_Smed_v6_632_0_1, [Score=517, Expect=4e-178]} {RNA1509_44465} {RNA1310_13618.2} {RNA815_14640}
7. MligTC455_49428 298 6.2 Mlig455_005078

Neo: Irradiation

Age: -

Region-enriched R5: 2.298/0.00000

 0.958 - - - 0.958 - - Mlig455_005078 {REF} {Length: 3358} {Pfam: C2H2-type zinc-finger domain [PF13909.8, score=45.7]; Zinc finger, C2H2 type [PF00096.28, score=25.1]; C2H2-type zinc finger [PF13894.8, score=21.5]; Protein of unknown function (DUF2722) [PF10846.10, score=20.3]} {Smed: dd_Smed_v6_36433_0_1, dd_Smed_v6_36433_0_1, [RH, Score=177, Expect=3e-48]} {RNA1509_19024} {RNA1310_8889} {RNA815_15557}
8. MligTC455_43448 71 1.49 Mlig455_003393

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_003393 {REF} {Length: 1919} {NoTransDecoderORF} {RNA1509_1651} {RNA1310_75407} {RNA815_43971}
9. MligTC455_18884 134 2.79 Mlig455_026109

Neo: -

Age: Down-Up-Down

 0.95 - - - - - 0.950 Mlig455_026109 {REF} {Length: 2729} {TRANSSPLICED} {Pfam: Protein phosphatase 1 regulatory subunit 35 C-terminus [PF15503.8, score=22.6]} {RNA1509_42732} {RNA1310_2620} {RNA815_4895}
10. MligTC455_49547 336 7 Mlig455_028613, Mlig455_028636

Neo: -

Age: -

Region-enriched R5: 2.009/0.00823

 NR1D2 0.95 - - - - - 0.950

Mlig455_028613 {REF} {Length: 3434} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=49.3]; Zinc finger, C2H2 type [PF00096.28, score=22.5]} {Human: ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=65.5, Expect=2e-10]; ENSG00000148200, NR6A1, nuclear receptor subfamily 6 group A member 1, [Score=64.7, Expect=4e-11]; ENSG00000143257, NR1I3, nuclear receptor subfamily 1 group I member 3, [Score=64.3, Expect=2e-10]} {Mouse: ENSMUSG00000063972, Nr6a1, nuclear receptor subfamily 6, group A, member 1, [Score=66.6, Expect=7e-12]; ENSMUSG00000021779, Thrb, thyroid hormone receptor beta, [Score=63.9, Expect=3e-10]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=63.2, Expect=5e-10]} {Celegans: WBGene00003607, nhr-8, Nuclear hormone receptor family member nhr-8, [Score=76.3, Expect=3e-14]} {Smed: dd_Smed_v6_14067_0_2, dd_Smed_v6_14067_0_2, [Score=75.5, Expect=5e-14]} {RNA1509_56197} {RNA1310_45687.1} {RNA815_27369.1}

Mlig455_028636 {REF} {Length: 3603} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=48.7]; Zinc finger, C2H2 type [PF00096.28, score=22.3]} {Human: ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=68.6, Expect=2e-11]; ENSG00000132170, PPARG, peroxisome proliferator activated receptor gamma, [Score=67.4, Expect=9e-12]} {Mouse: ENSMUSG00000063972, Nr6a1, nuclear receptor subfamily 6, group A, member 1, [Score=67.4, Expect=3e-11]; ENSMUSG00000000440, Pparg, peroxisome proliferator activated receptor gamma, [Score=66.2, Expect=9e-12]; ENSMUSG00000020889, Nr1d1, nuclear receptor subfamily 1, group D, member 1, [Score=64.7, Expect=3e-10]; ENSMUSG00000021779, Thrb, thyroid hormone receptor beta, [Score=64.7, Expect=2e-10]; ENSMUSG00000036192, Rorb, RAR-related orphan receptor beta, [Score=64.3, Expect=3e-10]; ENSMUSG00000032238, Rora, RAR-related orphan receptor alpha, [Score=64.3, Expect=3e-10]} {Dmel: FBgn0031257, CG4133, [RH, Score=68.6, Expect=1e-11]} {Celegans: WBGene00003607, nhr-8, Nuclear hormone receptor family member nhr-8, [Score=74.7, Expect=9e-14]} {Smed: dd_Smed_v6_14067_0_2, dd_Smed_v6_14067_0_2, [Score=73.9, Expect=2e-13]} {RNA1509_36556} {RNA1310_20988} {RNA815_9740}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA