TomoSeq data search

Data search

Results for MligTC455_26320

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_26320	164	3.42	Mlig455_014923	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.292	DUS3L	Mlig455_014923 {REF} {Length: 3585} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=169.3]; Eukaryotic translation initiation factor 3 subunit G [PF12353.10, score=93.3]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.9]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.7]} {Human: ENSG00000141994, DUS3L, dihydrouridine synthase 3 like, [RH, Score=549, Expect=0.0]} {Mouse: ENSMUSG00000007603, Dus3l, dihydrouridine synthase 3-like (S. cerevisiae), [RH, Score=531, Expect=1e-178]} {Dmel: FBgn0032819, CG10463, [RH, Score=476, Expect=6e-158]} {Celegans: WBGene00021377, Y37E11B.5, tRNA-dihydrouridine(47) synthase [NAD(P)(+)], [RH, Score=408, Expect=1e-132]} {Smed: dd_Smed_v6_8477_0_1, dd_Smed_v6_8477_0_1, [RH, Score=476, Expect=1e-158]} {RNA1509_5819} {RNA1310_22196} {RNA815_4984}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_26320

164

3.42

Mlig455_014923

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.292

DUS3L

Mlig455_014923 {REF} {Length: 3585} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=169.3]; Eukaryotic translation initiation factor 3 subunit G [PF12353.10, score=93.3]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.9]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.7]} {Human: ENSG00000141994, DUS3L, dihydrouridine synthase 3 like, [RH, Score=549, Expect=0.0]} {Mouse: ENSMUSG00000007603, Dus3l, dihydrouridine synthase 3-like (S. cerevisiae), [RH, Score=531, Expect=1e-178]} {Dmel: FBgn0032819, CG10463, [RH, Score=476, Expect=6e-158]} {Celegans: WBGene00021377, Y37E11B.5, tRNA-dihydrouridine(47) synthase [NAD(P)(+)], [RH, Score=408, Expect=1e-132]} {Smed: dd_Smed_v6_8477_0_1, dd_Smed_v6_8477_0_1, [RH, Score=476, Expect=1e-158]} {RNA1509_5819} {RNA1310_22196} {RNA815_4984}

Cumulative graph for MligTC455_26320

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-5.216	2.272	0.25250	0.90004
RegionR2	0.598	2.272	0.56651	0.92755
RegionR3	0.783	2.272	0.41950	0.94359
RegionR4	1.2	2.272	0.21901	0.50736
RegionR5	0.99	2.272	0.26116	0.58230
RegionR6	-0.406	2.272	0.94830	1.00000
RegionR7	2.025	2.272	0.03458	0.35385
RegionR8	0.027	2.272	0.86476	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	5.623	2.272	0.24750	0.96633
RegenerationR2	0.277	2.272	0.59548	0.91372
RegenerationR3	-0.427	2.272	0.51397	0.86410
RegenerationR4	-0.265	2.272	0.67639	0.94435
RegenerationR5	0.431	2.272	0.43510	0.82146
RegenerationR6	1.894	2.272	0.01121	0.13043
RegenerationBL	0.399	2.272	0.64959	0.98608
RegenerationTP	-0.872	2.272	0.45220	0.86896

Genes with expression patterns similar to MligTC455_26320

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_26320	164	3.42	Mlig455_014923	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.292	DUS3L	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_014923 {REF} {Length: 3585} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=169.3]; Eukaryotic translation initiation factor 3 subunit G [PF12353.10, score=93.3]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.9]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.7]} {Human: ENSG00000141994, DUS3L, dihydrouridine synthase 3 like, [RH, Score=549, Expect=0.0]} {Mouse: ENSMUSG00000007603, Dus3l, dihydrouridine synthase 3-like (S. cerevisiae), [RH, Score=531, Expect=1e-178]} {Dmel: FBgn0032819, CG10463, [RH, Score=476, Expect=6e-158]} {Celegans: WBGene00021377, Y37E11B.5, tRNA-dihydrouridine(47) synthase [NAD(P)(+)], [RH, Score=408, Expect=1e-132]} {Smed: dd_Smed_v6_8477_0_1, dd_Smed_v6_8477_0_1, [RH, Score=476, Expect=1e-158]} {RNA1509_5819} {RNA1310_22196} {RNA815_4984}
2.	MligTC455_16078	158	3.29	Mlig455_042445	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.824		0.972	-	-	-	-	-	0.972	Mlig455_042445 {REF} {Length: 2432} {RNA1509_40390} {RNA1310_26714.1} {RNA815_22393}
3.	MligTC455_20241	106	2.21	Mlig455_064205	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.589		0.967	-	-	-	-	-	0.967	Mlig455_064205 {REF} {Length: 1849} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [Score=62.8, Expect=2e-11]} {RNA1509_7841} {RNA1310_18810} {RNA815_3607}
4.	MligTC455_19664	141	2.94	Mlig455_056614	Neo: - Age: - Region-enriched R2: 5.722/0.03687 Region-enriched R6: 4.975/0.01610		0.966	-	-	-	-	-	0.966	Mlig455_056614 {REF} {Length: 1585} {Pfam: Lectin C-type domain [PF00059.23, score=68.8]} {Mouse: ENSMUSG00000014542, Clec4f, C-type lectin domain family 4, member f, [Score=53.9, Expect=3e-08]} {Dmel: FBgn0035199, tfc, triforce, [RH, Score=64.3, Expect=1e-12]} {Celegans: WBGene00022858, ZK1193.2, [Score=57.4, Expect=2e-09]} {RNA1310_27721} {RNA815_13332}
5.	MligTC455_41558	39	0.81	Mlig455_062914	Neo: - Age: -		0.966	-	-	-	-	-	0.966	Mlig455_062914 {REF} {Length: 851} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49004} {RNA1310_7252.1} {RNA815_39493}
6.	MligTC455_50844	224	4.67	Mlig455_018511	Neo: - Age: Down-Up-Up Region-enriched R2: 4.591/0.00005	SSUH2	0.954	-	-	-	-	-	0.954	Mlig455_018511 {REF} {Length: 1843} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=120, Expect=2e-29]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=95.5, Expect=3e-21]} {RNA1509_39980} {RNA1310_60742, RNA1509_39980} {RNA1509_39980, RNA815_28938}