M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19664

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19664 141 2.94 Mlig455_056614

Neo: -

Age: -

Region-enriched R2: 5.722/0.03687
Region-enriched R6: 4.975/0.01610

 Mlig455_056614 {REF} {Length: 1585} {Pfam: Lectin C-type domain [PF00059.23, score=68.8]} {Mouse: ENSMUSG00000014542, Clec4f, C-type lectin domain family 4, member f, [Score=53.9, Expect=3e-08]} {Dmel: FBgn0035199, tfc, triforce, [RH, Score=64.3, Expect=1e-12]} {Celegans: WBGene00022858, ZK1193.2, [Score=57.4, Expect=2e-09]} {RNA1310_27721} {RNA815_13332}

Cumulative graph for MligTC455_19664

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -10.636 2.179 1.00000 1.00000
RegionR2 5.722 2.179 0.00215 0.03687
RegionR3 3.722 2.179 0.01601 0.20539
RegionR4 -1.93 2.179 0.98149 1.00000
RegionR5 1.03 2.179 0.48827 0.85165
RegionR6 4.975 2.179 0.00028 0.01610
RegionR7 3.283 2.179 0.01824 0.24784
RegionR8 -6.167 2.179 0.99962 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.29 2.179 0.99985 1.00000
RegenerationR2 0.562 2.179 0.62118 0.92354
RegenerationR3 1.128 2.179 0.37344 0.78552
RegenerationR4 3.884 2.179 0.00324 0.07560
RegenerationR5 1.77 2.179 0.14722 0.56405
RegenerationR6 0.335 2.179 0.79098 0.97299
RegenerationBL 1.632 2.179 0.37812 0.74678
RegenerationTP 3.897 2.179 0.10366 0.49875


Genes with expression patterns similar to MligTC455_19664

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19664 141 2.94 Mlig455_056614

Neo: -

Age: -

Region-enriched R2: 5.722/0.03687
Region-enriched R6: 4.975/0.01610

 5 - 1.000 1.000 1.000 1.000 1.000 Mlig455_056614 {REF} {Length: 1585} {Pfam: Lectin C-type domain [PF00059.23, score=68.8]} {Mouse: ENSMUSG00000014542, Clec4f, C-type lectin domain family 4, member f, [Score=53.9, Expect=3e-08]} {Dmel: FBgn0035199, tfc, triforce, [RH, Score=64.3, Expect=1e-12]} {Celegans: WBGene00022858, ZK1193.2, [Score=57.4, Expect=2e-09]} {RNA1310_27721} {RNA815_13332}
2. MligTC455_40830 347 7.23 Mlig455_016648

Neo: -

Age: -

Region-enriched R2: 2.647/0.00743

 AL139142.2 1.794 - - 0.806 - - 0.988 Mlig455_016648 {REF} {Length: 2698} {TRANSSPLICED} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=42.1]; Ankyrin repeats (3 copies) [PF12796.9, score=37.6]; Ankyrin repeats (many copies) [PF13857.8, score=28.5]; Ankyrin repeat [PF00023.32, score=28.4]; Ankyrin repeat [PF13606.8, score=26.3]} {Human: ENSG00000285777, AL139142.2, ankyrin repeat domain 45, [RH, Score=103, Expect=2e-26]; ENSG00000183831, ANKRD45, ankyrin repeat domain 45, [RH, Score=103, Expect=2e-26]} {Mouse: ENSMUSG00000044835, Ankrd45, ankyrin repeat domain 45, [RH, Score=103, Expect=2e-26]} {Dmel: FBgn0033785, Sans, Scaffold protein containing ankyrin repeats and SAM domain, [Score=47.4, Expect=5e-06]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=47.0, Expect=5e-06]} {Smed: dd_Smed_v6_10212_0_1, dd_Smed_v6_10212_0_1, [RH, Score=124, Expect=3e-35]} {RNA1509_28742} {RNA1310_27748.2} {RNA815_10838}
3. MligTC455_46599 1220 25.42 Mlig455_013377

Neo: -

Age: -

Region-enriched R7: 4.322/0.00000
Region-enriched R6: 3.519/0.00002

Regeneration-downregulated BL: -3.731

Regeneration-depleted BL: -3.731

 CALB2 1.77 - 0.806 - 0.964 - - Mlig455_013377 {REF} {Length: 4778} {Pfam: EF hand [PF00036.34, score=120.9]; EF-hand domain [PF13405.8, score=114.5]; EF-hand domain pair [PF13499.8, score=88.6]; EF hand [PF13202.8, score=82.4]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=33.8]; EF-hand domain pair [PF13833.8, score=32.5]} {Human: ENSG00000172137, CALB2, calbindin 2, [RH, Score=219, Expect=7e-70]; ENSG00000282830, CALB2, calbindin 2, [RH, Score=219, Expect=7e-70]} {Mouse: ENSMUSG00000003657, Calb2, calbindin 2, [RH, Score=218, Expect=1e-69]} {Dmel: FBgn0004580, Cbp53E, Calbindin 53E, [RH, Score=360, Expect=4e-125]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=50.8, Expect=1e-07]} {Smed: dd_Smed_v6_1230_0_1, dd_Smed_v6_1230_0_1, [RH, Score=422, Expect=3e-150]} {RNA1509_11338} {RNA1310_24068, RNA1509_11338} {RNA1509_11338, RNA815_10142}
4. MligTC455_15500 74 1.54 Mlig455_044618

Neo: -

Age: -

 GABBR2 0.982 - - - 0.982 - - Mlig455_044618 {REF} {Length: 2484} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=138.4]; Receptor family ligand binding region [PF01094.30, score=57.8]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=184, Expect=2e-48]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=182, Expect=8e-48]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=173, Expect=9e-45]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=165, Expect=1e-42]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=122, Expect=4e-31]} {RNA1310_32095} {RNA815_22947}
5. MligTC455_25181 2947 61.4 Mlig455_016583, Mlig455_016639, Mlig455_035594, Mlig455_035605, Mlig455_051883

Neo: -

Age: logFC(26M/2M)=-0.369

Region-enriched R7: 3.379/0.00000

Regeneration-downregulated BL: -3.511

Regeneration-depleted BL: -3.511

 0.973 - - - 0.973 - -

Mlig455_016583 {REF} {Length: 2083} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=45.3]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=82.4, Expect=1e-18]} {RNA1509_22294} {RNA1310_28969} {RNA815_14223}

Mlig455_016639 {REF} {Length: 2081} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=20.8]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=63.5, Expect=2e-12]} {RNA1509_22294} {RNA1310_28969} {RNA815_14223}

Mlig455_035594 {REF} {Length: 986} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=46.3]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=82.8, Expect=3e-19]} {RNA1509_50243} {RNA1310_28969} {RNA815_14223}

Mlig455_035605 {REF} {Length: 2250} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=46.3]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=82.0, Expect=6e-19]} {RNA1509_58072} {RNA1310_28969} {RNA815_14223}

Mlig455_051883 {REF} {Length: 914} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=45.3]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=82.4, Expect=1e-18]} {RNA1509_50243} {RNA1310_28969} {RNA815_14223}
6. MligTC455_11069 184 3.83 Mlig455_038504

Neo: -

Age: -

 0.971 - - - 0.971 - - Mlig455_038504 {REF} {Length: 816} {RNA1310_51357} {RNA815_24712}
7. MligTC455_26320 164 3.42 Mlig455_014923

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.292

 DUS3L 0.966 - - - - - 0.966 Mlig455_014923 {REF} {Length: 3585} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=169.3]; Eukaryotic translation initiation factor 3 subunit G [PF12353.10, score=93.3]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.9]; Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.7]} {Human: ENSG00000141994, DUS3L, dihydrouridine synthase 3 like, [RH, Score=549, Expect=0.0]} {Mouse: ENSMUSG00000007603, Dus3l, dihydrouridine synthase 3-like (S. cerevisiae), [RH, Score=531, Expect=1e-178]} {Dmel: FBgn0032819, CG10463, [RH, Score=476, Expect=6e-158]} {Celegans: WBGene00021377, Y37E11B.5, tRNA-dihydrouridine(47) synthase [NAD(P)(+)], [RH, Score=408, Expect=1e-132]} {Smed: dd_Smed_v6_8477_0_1, dd_Smed_v6_8477_0_1, [RH, Score=476, Expect=1e-158]} {RNA1509_5819} {RNA1310_22196} {RNA815_4984}
8. MligTC455_36334 30 0.62 Mlig455_041900

Neo: -

Age: Up-Up-Down

Region-enriched R2: 9.749/0.00702

 URGCP 0.963 - - - - - 0.963 Mlig455_041900 {REF} {Length: 7730} {Pfam: Dynamin family [PF00350.25, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=20.2]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [RH, Score=216, Expect=4e-57]} {Mouse: ENSMUSG00000078606, Gm4070, predicted gene 4070, [RH, Score=527, Expect=1e-154]; ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [RH, Score=527, Expect=1e-154]} {RNA1509_40173} {RNA1310_4704.1, RNA1509_40173} {RNA1509_40173, RNA815_32622}
9. MligTC455_31186 30 0.63 Mlig455_048865

Neo: -

Age: -

Region-enriched R4: 2.983/0.02501

 0.962 - - - - 0.962 - Mlig455_048865 {REF} {Length: 4543} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=115.5]; Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=19.3]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=63.5, Expect=1e-11]} {RNA1509_47056} {RNA1310_5710.1} {RNA815_6291.1}
10. MligTC455_03803 364 7.58 Mlig455_053227, Mlig455_065046

Neo: -

Age: Up-Down-Down

Region-enriched R7: 3.052/0.00004

Regeneration-downregulated BL: -3.099

Regeneration-depleted BL: -3.099

 CRACR2A 0.961 - - - 0.961 - -

Mlig455_053227 {REF} {Length: 1663} {Pfam: EF-hand domain pair [PF13499.8, score=35.4]; EF-hand domain [PF13405.8, score=31.1]; EF hand [PF00036.34, score=30.6]; EF-hand domain pair [PF13833.8, score=30.3]} {Human: ENSG00000130038, CRACR2A, calcium release activated channel regulator 2A, [Score=142, Expect=1e-38]} {Mouse: ENSMUSG00000061414, Cracr2a, calcium release activated channel regulator 2A, [Score=142, Expect=3e-37]} {Smed: dd_Smed_v6_2966_0_1, dd_Smed_v6_2966_0_1, [Score=168, Expect=5e-47]} {RNA1509_20561} {RNA1310_2186} {RNA815_7541}

Mlig455_065046 {REF} {Length: 5354} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=173.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.0]; ADP-ribosylation factor family [PF00025.23, score=64.9]; 50S ribosome-binding GTPase [PF01926.25, score=35.5]; EF-hand domain pair [PF13499.8, score=33.8]; Gtr1/RagA G protein conserved region [PF04670.14, score=30.6]; EF-hand domain [PF13405.8, score=29.1]; EF hand [PF00036.34, score=28.4]; EF-hand domain pair [PF13833.8, score=27.8]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.7]} {Human: ENSG00000130038, CRACR2A, calcium release activated channel regulator 2A, [RH, Score=190, Expect=2e-50]} {Mouse: ENSMUSG00000061414, Cracr2a, calcium release activated channel regulator 2A, [RH, Score=186, Expect=3e-49]} {Dmel: FBgn0051118, RabX4, [Score=156, Expect=2e-43]} {Celegans: WBGene00007067, 4R79.2, Rab-44, [RH, Score=204, Expect=2e-58]} {Smed: dd_Smed_v6_2966_0_1, dd_Smed_v6_2966_0_1, [RH, Score=260, Expect=2e-76]} {RNA1509_20561} {RNA1310_2186, RNA1509_20561} {RNA1509_20561, RNA815_7541}
11. MligTC455_23942 80 1.67 Mlig455_002793

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_002793 {REF} {Length: 2668} {NoTransDecoderORF} {RNA1509_54874} {RNA1310_102706} {RNA815_8730.1}
12. MligTC455_26008 53 1.1 Mlig455_023495

Neo: -

Age: logFC(26M/2M)=2.853

 GTF2B 0.961 - - - - 0.961 - Mlig455_023495 {REF} {Length: 2399} {TRANSSPLICED} {Pfam: Transcription factor TFIIB repeat [PF00382.21, score=74.4]; F5/8 type C domain [PF00754.27, score=22.7]} {Human: ENSG00000137947, GTF2B, general transcription factor IIB, [Score=127, Expect=1e-33]} {Mouse: ENSMUSG00000028271, Gtf2b, general transcription factor IIB, [Score=127, Expect=7e-34]} {Dmel: FBgn0004915, TfIIB, Transcription factor IIB, [Score=134, Expect=2e-36]} {Celegans: WBGene00006648, ttb-1, Transcription initiation factor IIB, [Score=117, Expect=2e-30]} {Smed: dd_Smed_v6_2474_0_1, dd_Smed_v6_2474_0_1, [Score=99.4, Expect=8e-24]} {RNA1509_32364} {RNA1310_8246} {RNA815_13955}
13. MligTC455_02975 125 2.61 Mlig455_022830, Mlig455_022831, Mlig455_031047, Mlig455_031054

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_022830 {REF} {Length: 2561} {RNA1509_43679} {RNA1310_39376} {RNA815_22872.1}

Mlig455_022831 {REF} {Length: 1042} {NoTransDecoderORF} {RNA1509_48098} {RNA1310_55996} {RNA815_6533.1}

Mlig455_031047 {REF} {Length: 2122} {NoTransDecoderORF} {RNA1509_42928} {RNA1310_37500} {RNA815_25813.2}

Mlig455_031054 {REF} {Length: 7970} {RNA1509_42928, RNA1509_48098} {RNA1310_31923, RNA1509_48098} {RNA1509_48098, RNA815_22872.1}
14. MligTC455_30341 25 0.51 Mlig455_044530

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_044530 {REF} {Length: 1725} {Pfam: Integrase core domain [PF00665.28, score=25.0]} {Smed: dd_Smed_v6_9908_0_3, dd_Smed_v6_9908_0_3, [Score=73.2, Expect=3e-15]} {RNA1509_14877} {RNA1310_28454.1} {RNA815_21348.1}
15. MligTC455_37054 19 0.39 Mlig455_048861

Neo: -

Age: -

 0.959 - - - 0.959 - - Mlig455_048861 {REF} {Length: 729} {NoTransDecoderORF} {RNA1509_38267} {RNA1310_97394}
16. MligTC455_41934 45 0.94 Mlig455_034117

Neo: -

Age: Down-Down-Up

 KIAA0825 0.959 - - - - 0.959 - Mlig455_034117 {REF} {Length: 4856} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4495) [PF14906.8, score=176.5]} {Human: ENSG00000185261, KIAA0825, KIAA0825, [RH, Score=122, Expect=2e-27]} {Mouse: ENSMUSG00000071252, 2210408I21Rik, RIKEN cDNA 2210408I21 gene, [RH, Score=124, Expect=5e-28]} {Dmel: FBgn0036859, CG14085, [RH, Score=90.9, Expect=5e-18]} {Smed: dd_Smed_v6_9819_0_1, dd_Smed_v6_9819_0_1, [RH, Score=209, Expect=8e-55]} {RNA1509_22399} {RNA1310_1594.1, RNA1509_22399} {RNA1509_22399, RNA815_11157}
17. MligTC455_43666 172 3.59 Mlig455_051408

Neo: -

Age: logFC(26M/2M)=-0.352

 KY 0.957 - - - - 0.957 - Mlig455_051408 {REF} {Length: 5047} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=111, Expect=2e-24]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=111, Expect=1e-24]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=150, Expect=7e-37]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=139, Expect=1e-34]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=137, Expect=1e-32]} {RNA1509_7582} {RNA1310_2203} {RNA815_6135}
18. MligTC455_54275 30 0.63 Mlig455_017654

Neo: -

Age: -

 CHRM5 0.957 - - - 0.957 - - Mlig455_017654 {REF} {Length: 2293} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=252.3]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=44.3]; Olfactory receptor [PF13853.8, score=21.1]} {Human: ENSG00000184984, CHRM5, cholinergic receptor muscarinic 5, [RH, Score=213, Expect=9e-61]} {Mouse: ENSMUSG00000046159, Chrm3, cholinergic receptor, muscarinic 3, cardiac, [Score=226, Expect=4e-65]} {Dmel: FBgn0000037, mAChR-A, muscarinic Acetylcholine Receptor, A-type, [RH, Score=214, Expect=1e-59]} {Celegans: WBGene00001519, gar-3, Muscarinic acetylcholine receptor gar-3, [RH, Score=217, Expect=4e-62]} {Smed: dd_Smed_v6_20043_0_1, dd_Smed_v6_20043_0_1, [RH, Score=221, Expect=4e-64]} {RNA1310_22334} {RNA815_30775}
19. MligTC455_20241 106 2.21 Mlig455_064205

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.589

 0.956 - - - - - 0.956 Mlig455_064205 {REF} {Length: 1849} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [Score=62.8, Expect=2e-11]} {RNA1509_7841} {RNA1310_18810} {RNA815_3607}
20. MligTC455_33917 79 1.65 Mlig455_016784

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.075

 0.956 - - - 0.956 - - Mlig455_016784 {REF} {Length: 5047} {RNA1509_11266} {RNA1310_103034} {RNA815_22649.3}
21. MligTC455_47911 454 9.45 Mlig455_025174, Mlig455_025185, Mlig455_063945

Neo: -

Age: Down-Down-Up

Region-enriched R7: 1.848/0.00637

 INAFM2 0.956 - - - 0.956 - -

Mlig455_025174 {REF} {Length: 1166} {Pfam: TRP-interacting helix [PF15018.8, score=59.1]; Voltage-dependent anion channel [PF03595.19, score=21.3]} {Human: ENSG00000259330, INAFM2, InaF motif containing 2, [RH, Score=72.4, Expect=4e-17]} {Mouse: ENSMUSG00000074918, Inafm2, InaF motif containing 2, [RH, Score=72.0, Expect=4e-17]} {Dmel: FBgn0260812, inaF-D, [RH, Score=51.6, Expect=6e-09]} {Celegans: WBGene00009325, F32D8.15, [RH, Score=48.5, Expect=2e-08]} {Smed: dd_Smed_v6_11468_0_1, dd_Smed_v6_11468_0_1, [RH, Score=66.6, Expect=6e-16]} {RNA1509_26679} {RNA1310_3928} {RNA815_30540}

Mlig455_025185 {REF} {Length: 1331} {Pfam: TRP-interacting helix [PF15018.8, score=59.1]; Voltage-dependent anion channel [PF03595.19, score=21.3]} {Human: ENSG00000259330, INAFM2, InaF motif containing 2, [RH, Score=72.4, Expect=4e-17]} {Mouse: ENSMUSG00000074918, Inafm2, InaF motif containing 2, [RH, Score=72.0, Expect=4e-17]} {Dmel: FBgn0260812, inaF-D, [RH, Score=51.6, Expect=6e-09]} {Celegans: WBGene00009325, F32D8.15, [RH, Score=48.5, Expect=2e-08]} {Smed: dd_Smed_v6_11468_0_1, dd_Smed_v6_11468_0_1, [RH, Score=66.6, Expect=6e-16]} {RNA1509_26679} {RNA1310_3928, RNA1509_26679} {RNA1509_26679, RNA815_30540}

Mlig455_063945 {REF} {Length: 1146} {Pfam: TRP-interacting helix [PF15018.8, score=59.1]; Voltage-dependent anion channel [PF03595.19, score=21.3]} {Human: ENSG00000259330, INAFM2, InaF motif containing 2, [RH, Score=72.4, Expect=4e-17]} {Mouse: ENSMUSG00000074918, Inafm2, InaF motif containing 2, [RH, Score=72.0, Expect=4e-17]} {Dmel: FBgn0260812, inaF-D, [RH, Score=51.6, Expect=6e-09]} {Celegans: WBGene00009325, F32D8.15, [RH, Score=48.5, Expect=2e-08]} {Smed: dd_Smed_v6_11468_0_1, dd_Smed_v6_11468_0_1, [RH, Score=66.6, Expect=6e-16]} {RNA1509_26679, RNA1509_58648} {RNA1310_3928, RNA1509_58648} {RNA1509_58648, RNA815_30540}
22. MligTC455_47187 163 3.4 Mlig455_065053

Neo: -

Age: -

Region-enriched R2: 3.157/0.01854

 0.954 - - - 0.954 - - Mlig455_065053 {REF} {Length: 3229} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=45.0]} {Smed: dd_Smed_v6_21592_0_1, dd_Smed_v6_21592_0_1, [RH, Score=63.2, Expect=8e-11]} {RNA1509_28827} {RNA1310_43256} {RNA815_16925}
23. MligTC455_12177 51 1.05 Mlig455_040250, Mlig455_054701

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_040250 {REF} {Length: 1951} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=32.3]} {RNA1509_43579} {RNA1310_90793}

Mlig455_054701 {REF} {Length: 2050} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=34.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=18.8]} {RNA1509_43579} {RNA1310_90793}
24. MligTC455_41558 39 0.81 Mlig455_062914

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_062914 {REF} {Length: 851} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49004} {RNA1310_7252.1} {RNA815_39493}
25. MligTC455_52619 109 2.26 Mlig455_024816

Neo: -

Age: Down-Down-Up

 PCF11 0.952 - - - - 0.952 - Mlig455_024816 {REF} {Length: 4120} {Pfam: CID domain [PF04818.15, score=23.9]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [Score=85.1, Expect=5e-16]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [Score=89.7, Expect=1e-17]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=66.2, Expect=1e-10]} {Celegans: WBGene00020092, pcf-11, Polyadenylation and cleavage factor homolog 11, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [Score=92.8, Expect=4e-19]} {RNA1509_14664} {RNA1310_4848.1} {RNA815_5846}
26. MligTC455_16943 3243 67.57 Mlig455_015939, Mlig455_059704

Neo: -

Age: logFC(26M/2M)=-0.433

Region-enriched R7: 1.287/0.00682
Region-enriched R6: 1.072/0.03826

Regeneration-downregulated BL: -2.106

Regeneration-depleted BL: -2.106

 0.95 - - - 0.950 - -

Mlig455_015939 {REF} {Length: 1575} {RNA1509_17366} {RNA1310_24251} {RNA815_10435}

Mlig455_059704 {REF} {Length: 2179} {RNA1509_17366} {RNA1310_24251, RNA1509_17366} {RNA1509_17366, RNA815_10435}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA